Enzymatic Characterization of a Prokaryotic Urea Carboxylase

Journal of Bacteriology

Volumn 186, Issue 9, 2004, Pages 2532-2539

  Kanamori, Takeshi ^a   Kanou, Norihisa ^a   Atomi, Haruyuki ^a   Imanaka, Tadayuki ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACETAMIDE; ADENOSINE TRIPHOSPHATE; ALLOPHANATE HYDROLASE; AMINO ACID; BACTERIAL ENZYME; COENZYME A; FORMAMIDE; ISOENZYME; PEPTIDE; PROPIONYL COENZYME A; UNCLASSIFIED DRUG; UREA AMIDOLYASE; UREA CARBOXYLASE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME DEGRADATION; ENZYME MECHANISM; ENZYME STRUCTURE; ENZYME SUBUNIT; GENE STRUCTURE; GENETIC CODE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OLEOMONAS SAGARANENSIS; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DOMAIN; PROTEIN MOTIF; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; STRUCTURAL HOMOLOGY; UREA CYCLE; YEAST;

ALPHAPROTEOBACTERIA; AMINO ACID SEQUENCE; BIOTINYLATION; CARBON-NITROGEN LIGASES; CLONING, MOLECULAR; KINETICS; MOLECULAR SEQUENCE DATA; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; UREA;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; OLEOMONAS SAGARANENSIS; PROKARYOTA; PROTEOBACTERIA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; UCA;

EID: 1942476071     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.9.2532-2539.2004     Document Type: Article

References (29)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1995. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
3. Benoit, S., and R. J. Maier. 2003. Dependence of Helicobacter pylori urease activity on the nickel-sequestering ability of the UreE accessory protein. J. Bacteriol. 185:4787-4795.
4. Chuakrut, S., H. Arai, M. Ishii, and Y. Igarashi. 2003. Characterization of a bifunctional archaeal acyl coenzyme A carboxylase. J. Bacteriol. 185:938-947.
5. Collins, C. M., and S. E. F. D'Orazio. 1993. Bacterial ureases: structure, regulation of expression and role in pathogenesis. Mol. Microbiol. 9:907-913.
6. Della-Penna, D., R. E. Christoffersen, and A. B. Bennett. 1986. Biotinylated proteins as molecular weight standards on Western blots. Anal. Biochem. 152:329-332.
7. Genbauffe, F. S., and T. G. Cooper. 1991. The urea amidolyase (DUR1,2) gene of Saccharomyces cerevisiae. DNA Seq. 2:19-32.
8. Jitrapakdee, S., and J. C. Wallace. 2003. The biotin enzyme family: conserved structural motifs and domain rearrangements. Curr. Protein Pept. Sci. 4:217-229.
9. Kanamori, T., N. Rashid, M. Morikawa, H. Atomi, and T. Imanaka. 2002. Oleomonas sagaranensis gen. nov., sp. nov., represents a novel genus in the α-Proteobacteria. FEMS Microbiol. Lett. 217:255-261.
10. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
11. Leftley, J. W., and P. J. Syrett. 1973. Urease and ATP:urea amidolyase activity in unicellular algae. J. Gen. Microbiol. 77:109-115.
12. Mackay, E. M., and J. A. Pateman. 1982. The regulation of urease activity in Aspergillus nidulans. Biochem. Genet. 20:763-776.
13. Mobley, H. L. T., and R. P. Hausinger. 1989. Microbial ureases: significance, regulation, and molecular characterization. Microbiol. Rev. 53:85-108.
14. Mobley, H. L. T., M. D. Island, and R. P. Hausinger. 1995. Molecular biology of microbial ureases. Microbiol. Rev. 59:451-480.
15. Nishiya, Y., and T. Imanaka. 1993. Cloning and nucleotide sequence of the urea amidolyase gene from Candida utilis. J. Ferment. Bioeng. 75:245-253.
16. Robb, F. T., and A. R. Place. 1995. Thermophiles. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
17. Roon, R. J., J. Hampshire, and B. Levenberg. 1972. Urea amidolyase. The involvement of biotin in urea cleavage. J. Biol. Chem. 247:7539-7545.
18. Roon, R. J., and B. Levenberg. 1970. ATP:urea amidolyase (ADP) (Candida utilis). Methods Enzymol. 17:317-324.
19. Roon, R. J., and B. Levenberg. 1972. Urea amidolyase. I. Properties of the enzyme from Candida utilis. J. Biol. Chem. 247:4107-4113.
20. Sambrook, J., and D. W. Russell. 2001. Molecular cloning, 3 ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
21. Sirko, A., and R. Brodzik. 2000. Plant ureases: roles and regulation. Acta Biochim. Pol. 47:1189-1195.
22. Sumrada, R. A., and T. G. Cooper. 1982. Urea carboxylase and allophanate hydrolase are components of a multifunctional protein in yeast. J. Biol. Chem. 257:9119-9127.
23. Thoden, J. B., C. Z. Blanchard, H. M. Holden, and G. L. Waldrop. 2000. Movement of the biotin carboxylase B-domain as a result of ATP binding. J. Biol. Chem. 275:16183-16190.
24. Thompson, J. F., and A.-M. E. Muenster. 1971. Separation of the Chlorella ATP:urea amido-lyase into two components. Biochem. Biophys. Res. Commun. 43:1049-1055.
25. Waheed, A., and P. A. Castric. 1977. Purification and properties of the urea amidolyase from Candida utilis. J. Biol. Chem. 252:1628-1632.
26. Waldrop, G. L., I. Rayment, and H. M. Holden. 1994. Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase. Biochemistry 33:10249-10256.
27. Whitney, P. A., and T. Cooper. 1973. Urea carboxylase from Saccharomyces cerevisiae. Evidence for a minimal two-step reaction sequence. J. Biol. Chem. 248:325-330.
28. Whitney, P. A., T. G. Cooper, and B. Magasanik. 1973. The induction of urea carboxylase and allophanate hydrolase in Saccharomyces cerevisiae. J. Biol. Chem. 248:6203-6209.
29. Zhang, H., Z. Yang, Y. Shen, and L. Tong. 2003. Crystal structure of the carboxyltransferase domain of acetyl-coenzyme A carboxylase. Science 299: 2064-2067.