-
1
-
-
0026767213
-
Comparison of proteins of ADP-glucose pyrophosphorylase from diverse sources
-
10.1007/BF00162999. 1318389
-
Comparison of proteins of ADP-glucose pyrophosphorylase from diverse sources. BJ Smith-White J Preiss, J Mol Evol 1992 34 449 464 10.1007/BF00162999 1318389
-
(1992)
J Mol Evol
, vol.34
, pp. 449-464
-
-
Smith-White, B.J.1
Preiss, J.2
-
2
-
-
34347388786
-
The two AGPase subunits evolve at different rates in angiosperm, yet they are equally sensitive to activity altering amino acid changes when expressed in bacteria
-
17496118. 10.1105/tpc.106.049676
-
The two AGPase subunits evolve at different rates in angiosperm, yet they are equally sensitive to activity altering amino acid changes when expressed in bacteria. N Georgelis EL Braun JR Shaw LC Hannah, Plant Cell 2007 19 1458 1472 17496118 10.1105/tpc.106.049676
-
(2007)
Plant Cell
, vol.19
, pp. 1458-1472
-
-
Georgelis, N.1
Braun, E.L.2
Shaw, J.R.3
Hannah, L.C.4
-
3
-
-
0017151912
-
Characterization of ADP-glucose pyrophosphorylase from shrunken-2 and brittle-2 mutants of maize
-
10.1007/BF00485834. 985379
-
Characterization of ADP-glucose pyrophosphorylase from shrunken-2 and brittle-2 mutants of maize. LC Hannah OE Nelson Jr, Biochem Genet 1976 14 547 560 10.1007/BF00485834 985379
-
(1976)
Biochem Genet
, vol.14
, pp. 547-560
-
-
Hannah, L.C.1
Nelson Jr., O.E.2
-
4
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
3480529. 10.1073/pnas.84.24.9054
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. KH Wolfe WH Li PM Sharp, Proc Natl Acad Sci USA 1987 84 9054 9058 3480529 10.1073/pnas.84.24.9054
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
5
-
-
0029812835
-
Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
-
8816790. 10.1073/pnas.93.19.10274
-
Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. BS Gaut BR Morton MM McCaig MT Clegg, Proc Natl Acad Sci USA 1996 93 10274 10279 8816790 10.1073/pnas.93.19.10274
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10274-10279
-
-
Gaut, B.S.1
Morton, B.R.2
McCaig, M.M.3
Clegg, M.T.4
-
6
-
-
0002557518
-
Molecular clocks and nucleotide substitution rates in higher plants
-
New York, Plenum Press Hecht MK
-
Molecular clocks and nucleotide substitution rates in higher plants. BS Gaut, Evolutionary Biology New York, Plenum Press, Hecht MK, 1998 93 120
-
(1998)
Evolutionary Biology
, pp. 93-120
-
-
Gaut, B.S.1
-
7
-
-
0032712146
-
The molecular evolution of terminal ear1, a regulatory gene in the genus Zea
-
10545473
-
The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. SE White JF Doebley, Genetics 1999 153 1455 1462 10545473
-
(1999)
Genetics
, vol.153
, pp. 1455-1462
-
-
White, S.E.1
Doebley, J.F.2
-
8
-
-
0032877611
-
Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants
-
10471724
-
Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. PD Rabinowicz EL Braun AD Wolfe B Bowen E Grotewold, Genetics 1999 153 427 444 10471724
-
(1999)
Genetics
, vol.153
, pp. 427-444
-
-
Rabinowicz, P.D.1
Braun, E.L.2
Wolfe, A.D.3
Bowen, B.4
Grotewold, E.5
-
9
-
-
0029931535
-
Synonymous codon bias is related to gene length in Escherichia coli: Selection for translational accuracy?
-
8754221
-
Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy? A Eyre-Walker, Mol Biol Evol 1996 13 864 872 8754221
-
(1996)
Mol Biol Evol
, vol.13
, pp. 864-872
-
-
Eyre-Walker, A.1
-
10
-
-
31144465926
-
Hearing silence: Non-neutral evolution at synonymous sites in mammals
-
10.1038/nrg1770. 16418745
-
Hearing silence: non-neutral evolution at synonymous sites in mammals. JV Chamary JL Parmley LD Hurst, Nat Rev Genet 2006 7 98 108 10.1038/nrg1770 16418745
-
(2006)
Nat Rev Genet
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
11
-
-
30744469841
-
Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers
-
10.1093/molbev/msj035. 16221894
-
Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers. JL Parmley JV Chamary LD Hurst, Mol Biol Evol 2006 23 301 309 10.1093/molbev/msj035 16221894
-
(2006)
Mol Biol Evol
, vol.23
, pp. 301-309
-
-
Parmley, J.L.1
Chamary, J.V.2
Hurst, L.D.3
-
12
-
-
34547739034
-
Widespread positive selection in synonymous sites of mammalian genes
-
10.1093/molbev/msm100. 17522087
-
Widespread positive selection in synonymous sites of mammalian genes. AM Resch L Carmel L Marĩo-Ramírez AY Ogurtsov SA Shabalina IB Rogozin EV Koonin, Mol Biol Evol 2007 24 1821 1831 10.1093/molbev/msm100 17522087
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1821-1831
-
-
Resch, A.M.1
Carmel, L.2
Marĩo-Ramírez, L.3
Ogurtsov, A.Y.4
Shabalina, S.A.5
Rogozin, I.B.6
Koonin, E.V.7
-
13
-
-
27844569825
-
Site-to-site variation of synonymous substitution rates
-
10.1093/molbev/msi232. 16107593
-
Site-to-site variation of synonymous substitution rates. SK Pond SV Muse, Mol Biol Evol 2005 22 2375 2385 10.1093/molbev/msi232 16107593
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2375-2385
-
-
Pond, S.K.1
Muse, S.V.2
-
14
-
-
34547844134
-
Towards realistic codon models: Among site variability and dependency of synonymous and non-synonymous rates
-
10.1093/bioinformatics/btm176
-
Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates. I Mayrose A Doron-Faigenboim E Bacharach T Pupko, Bioinformatics 2007 23 319 327 10.1093/bioinformatics/btm176
-
(2007)
Bioinformatics
, vol.23
, pp. 319-327
-
-
Mayrose, I.1
Doron-Faigenboim, A.2
Bacharach, E.3
Pupko, T.4
-
15
-
-
3042548848
-
Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences
-
10.1093/molbev/msh088. 15014159
-
Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences. TK Seo H Kishino JL Thorne, Mol Biol Evol 2004 21 1201 1213 10.1093/molbev/msh088 15014159
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1201-1213
-
-
Seo, T.K.1
Kishino, H.2
Thorne, J.L.3
-
16
-
-
0043210400
-
The different large subunit isoforms of Arabidopsis thaliana ADP-glucose pyrophosphorylase confer distinct kinetic and regulatory properties to the heterotetrameric enzyme
-
10.1074/jbc.M304280200. 12748181
-
The different large subunit isoforms of Arabidopsis thaliana ADP-glucose pyrophosphorylase confer distinct kinetic and regulatory properties to the heterotetrameric enzyme. P Crevillen MA Ballicora A Merida J Preiss JM Romero, J Biol Chem 2003 278 28508 28515 10.1074/jbc.M304280200 12748181
-
(2003)
J Biol Chem
, vol.278
, pp. 28508-28515
-
-
Crevillen, P.1
Ballicora, M.A.2
Merida, A.3
Preiss, J.4
Romero, J.M.5
-
17
-
-
0042206877
-
Relative turnover numbers of maize endosperm and potato tuber ADP-glucose pyrophosphorylases in the absence and presence of 3-phosphoglyceric acid
-
10.1007/s00425-003-1000-0. 14520572
-
Relative turnover numbers of maize endosperm and potato tuber ADP-glucose pyrophosphorylases in the absence and presence of 3-phosphoglyceric acid. BT Burger JM Cross JR Shaw JR Caren TW Greene TW Okita LC Hannah, Planta 2003 217 449 456 10.1007/s00425-003-1000-0 14520572
-
(2003)
Planta
, vol.217
, pp. 449-456
-
-
Burger, B.T.1
Cross, J.M.2
Shaw, J.R.3
Caren, J.R.4
Greene, T.W.5
Okita, T.W.6
Hannah, L.C.7
-
18
-
-
0032711802
-
The allosterically unregulated isoform of ADP-glucose pyrophosphorylase from barley endosperm is the most likely source of ADP-glucose incorporated into endosperm starch
-
10557246. 10.1104/pp.121.3.965
-
The allosterically unregulated isoform of ADP-glucose pyrophosphorylase from barley endosperm is the most likely source of ADP-glucose incorporated into endosperm starch. DN Doan H Rudi OA Olsen, Plant Physiol 1999 121 965 975 10557246 10.1104/pp.121.3.965
-
(1999)
Plant Physiol
, vol.121
, pp. 965-975
-
-
Doan, D.N.1
Rudi, H.2
Olsen, O.A.3
-
19
-
-
33645013647
-
Heat stability of maize endosperm ADP-glucose pyrophosphorylase is enhanced by insertion of a cysteine in the N terminus of the small subunit
-
16299180. 10.1104/pp.105.067637
-
Heat stability of maize endosperm ADP-glucose pyrophosphorylase is enhanced by insertion of a cysteine in the N terminus of the small subunit. CR Linebarger SK Boehlein AK Sewell J Shaw LC Hannah, Plant Physiol 2005 139 1625 1634 16299180 10.1104/pp.105.067637
-
(2005)
Plant Physiol
, vol.139
, pp. 1625-1634
-
-
Linebarger, C.R.1
Boehlein, S.K.2
Sewell, A.K.3
Shaw, J.4
Hannah, L.C.5
-
20
-
-
40749101539
-
Heat stability and allosteric properties of the maize endosperm ADP-glucose pyrophosphorylase are intimately intertwined
-
18024561. 10.1104/pp.107.109942
-
Heat stability and allosteric properties of the maize endosperm ADP-glucose pyrophosphorylase are intimately intertwined. SK Boehlein JR Shaw JD Stewart LC Hannah, Plant Physiol 2008 146 289 299 18024561 10.1104/pp.107. 109942
-
(2008)
Plant Physiol
, vol.146
, pp. 289-299
-
-
Boehlein, S.K.1
Shaw, J.R.2
Stewart, J.D.3
Hannah, L.C.4
-
21
-
-
0032728408
-
Statistical methods for testing functional divergence after gene duplication
-
10605109
-
Statistical methods for testing functional divergence after gene duplication. X Gu, Mol Biol Evol 1999 16 1664 1674 10605109
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1664-1674
-
-
Gu, X.1
-
22
-
-
0035061686
-
Maximum likelihood approach for gene family evolution under functional divergence
-
11264396
-
Maximum likelihood approach for gene family evolution under functional divergence. X Gu, Mol Biol Evol 2001 18 453 464 11264396
-
(2001)
Mol Biol Evol
, vol.18
, pp. 453-464
-
-
Gu, X.1
-
23
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
10.1126/science.290.5494.1151. 11073452
-
The evolutionary fate and consequences of duplicate genes. M Lynch JS Conery, Science 2000 290 1151 1155 10.1126/science.290.5494.1151 11073452
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
25
-
-
0037500141
-
Evolution by gene duplication: An update
-
10.1016/S0169-5347(03)00033-8
-
Evolution by gene duplication: an update. J Zhang, Trends Ecol Evol 2003 18 292 298 10.1016/S0169-5347(03)00033-8
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.1
-
26
-
-
19344372749
-
Gene duplication: The genomic trade in spare parts
-
15252449. 10.1371/journal.pbio.0020206
-
Gene duplication: the genomic trade in spare parts. M Hurles, PLoS Biol 2004 2 E206 15252449 10.1371/journal.pbio.0020206
-
(2004)
PLoS Biol
, vol.2
, pp. 206
-
-
Hurles, M.1
-
27
-
-
34047199274
-
The evolution of seminal ribonuclease: Pseudogene reactivation or multiple gene inactivation events?
-
10.1093/molbev/msm020. 17267422
-
The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events? SO Sassi EL Braun SA Benner, Mol Biol Evol 2007 24 1012 1024 10.1093/molbev/msm020 17267422
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1012-1024
-
-
Sassi, S.O.1
Braun, E.L.2
Benner, S.A.3
-
28
-
-
1042296446
-
Innovation from reduction: Gene loss, domain loss and sequence divergence in genome evolution
-
15130831
-
Innovation from reduction: gene loss, domain loss and sequence divergence in genome evolution. EL Braun, Appl Bioinformatics 2003 2 13 34 15130831
-
(2003)
Appl Bioinformatics
, vol.2
, pp. 13-34
-
-
Braun, E.L.1
-
29
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
10.1126/science.1150646. 18079367
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. SA Rensing D Lang AD Zimmer A Terry A Salamov H Shapiro T Nishiyama PF Perroud EA Lindquist Y Kamisugi T Tanahashi K Sakakibara T Fujita K Oishi T Shin-I Y Kuroki A Toyoda Y Suzuki S Hashimoto K Yamaguchi S Sugano Y Kohara A Fujiyama A Anterola S Aoki N Ashton WB Barbazuk E Barker JL Bennetzen R Blankenship SH Cho SK Dutcher M Estelle JA Fawcett H Gundlach K Hanada A Heyl KA Hicks J Hughes M Lohr K Mayer A Melkozernov T Murata DR Nelson B Pils M Prigge B Reiss T Renner S Rombauts PJ Rushton A Sanderfoot G Schween SH Shiu K Stueber FL Theodoulou H Tu Y Van de Peer PJ Verrier E Waters A Wood L Yang D Cove AC Cuming M Hasebe S Lucas BD Mishler R Reski IV Grigoriev RS Quatrano JL Boore, Science 2008 319 64 69 10.1126/science.1150646 18079367
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
Lang, D.2
Zimmer, A.D.3
Terry, A.4
Salamov, A.5
Shapiro, H.6
Nishiyama, T.7
Perroud, P.F.8
Lindquist, E.A.9
Kamisugi, Y.10
Tanahashi, T.11
Sakakibara, K.12
Fujita, T.13
Oishi, K.14
Shin-I, T.15
Kuroki, Y.16
Toyoda, A.17
Suzuki, Y.18
Hashimoto, S.19
Yamaguchi, K.20
Sugano, S.21
Kohara, Y.22
Fujiyama, A.23
Anterola, A.24
Aoki, S.25
Ashton, N.26
Barbazuk, W.B.27
Barker, E.28
Bennetzen, J.L.29
Blankenship, R.30
Cho, S.H.31
Dutcher, S.K.32
Estelle, M.33
Fawcett, J.A.34
Gundlach, H.35
Hanada, K.36
Heyl, A.37
Hicks, K.A.38
Hughes, J.39
Lohr, M.40
Mayer, K.41
Melkozernov, A.42
Murata, T.43
Nelson, D.R.44
Pils, B.45
Prigge, M.46
Reiss, B.47
Renner, T.48
Rombauts, S.49
Rushton, P.J.50
Sanderfoot, A.51
Schween, G.52
Shiu, S.H.53
Stueber, K.54
Theodoulou, F.L.55
Tu, H.56
De, P.Y.V.57
Verrier, P.J.58
Waters, E.59
Wood, A.60
Yang, L.61
Cove, D.62
Cuming, A.C.63
Hasebe, M.64
Lucas, S.65
Mishler, B.D.66
Reski, R.67
Grigoriev, I.V.68
Quatrano, R.S.69
Boore, J.L.70
more..
-
30
-
-
0030885968
-
The origin and early evolution of plants on land
-
10.1038/37918
-
The origin and early evolution of plants on land. P Kenrick PR Crane, Nature 1997 389 33 39 10.1038/37918
-
(1997)
Nature
, vol.389
, pp. 33-39
-
-
Kenrick, P.1
Crane, P.R.2
-
31
-
-
36249020343
-
SynPAM-A Distance Measure Based on Synonymous Codon Substitutions
-
SynPAM-A Distance Measure Based on Synonymous Codon Substitutions. A Schneider GH Gonnet GM Cannarozzi, IEEE/ACM TCBB 2007 4 553 560
-
(2007)
IEEE/ACM TCBB
, vol.4
, pp. 553-560
-
-
Schneider, A.1
Gonnet, G.H.2
Cannarozzi, G.M.3
-
32
-
-
0000365320
-
Fitting the gene lineage into its species lineage: A parsimony strategy illustrated by cladograms constructed from globin sequences
-
10.2307/2412519
-
Fitting the gene lineage into its species lineage: a parsimony strategy illustrated by cladograms constructed from globin sequences. M Goodman J Czelusniak GW Moore AE Romero-Herrera G Matsuda, Syst Zool 1979 28 132 168 10.2307/2412519
-
(1979)
Syst Zool
, vol.28
, pp. 132-168
-
-
Goodman, M.1
Czelusniak, J.2
Moore, G.W.3
Romero-Herrera, A.E.4
Matsuda, G.5
-
33
-
-
0028942619
-
Molecular cloning and characterization of novel isoforms of potato ADP-glucose pyrophosphorylase
-
10.1007/BF00298960. 7700228
-
Molecular cloning and characterization of novel isoforms of potato ADP-glucose pyrophosphorylase. U La Cognata L Willmitzer B Müller- Röber, Mol Gen Genet 1995 246 538 548 10.1007/BF00298960 7700228
-
(1995)
Mol Gen Genet
, vol.246
, pp. 538-548
-
-
La Cognata, U.1
Willmitzer, L.2
Müller-Röber, B.3
-
34
-
-
0032509805
-
Molecular cloning and organ-specific expression of three isoforms of tomato ADP-glucose pyrophosphorylase gene
-
10.1016/S0378-1119(97)00588-X. 9469935
-
Molecular cloning and organ-specific expression of three isoforms of tomato ADP-glucose pyrophosphorylase gene. SW Park WI Chung, Gene 1998 206 215 221 10.1016/S0378-1119(97)00588-X 9469935
-
(1998)
Gene
, vol.206
, pp. 215-221
-
-
Park, S.W.1
Chung, W.I.2
-
35
-
-
24644503222
-
Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA
-
10.1093/pcp/pci101. 15821022
-
Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA. T Akihiro K Mizuno T Fujimura, Plant Cell Physiol 2005 46 937 946 10.1093/pcp/pci101 15821022
-
(2005)
Plant Cell Physiol
, vol.46
, pp. 937-946
-
-
Akihiro, T.1
Mizuno, K.2
Fujimura, T.3
-
36
-
-
28544439070
-
Expression profiling of genes involved in starch synthesis in sink and source organs of rice
-
10.1093/jxb/eri292. 16275672
-
Expression profiling of genes involved in starch synthesis in sink and source organs of rice. T Ohdan PB Francisco Jr T Sawada T Hirose T Terao H Satoh Y Nakamura, J Exp Bot 2005 56 3229 3244 10.1093/jxb/eri292 16275672
-
(2005)
J Exp Bot
, vol.56
, pp. 3229-3244
-
-
Ohdan, T.1
Francisco Jr., P.B.2
Sawada, T.3
Hirose, T.4
Terao, T.5
Satoh, H.6
Nakamura, Y.7
-
37
-
-
33845266104
-
The gene encoding the cytosolic small subunit of ADP-glucose pyrophosphorylase in barley endosperm also encodes the major plastidial small subunit in the leaves
-
10.1093/jxb/erl110. 16957017
-
The gene encoding the cytosolic small subunit of ADP-glucose pyrophosphorylase in barley endosperm also encodes the major plastidial small subunit in the leaves. S Rosti H Rudi K Rudi HG Opsahl-Sorteberg B Fahy K Denyer, J Exp Bot 2006 57 3619 3626 10.1093/jxb/erl110 16957017
-
(2006)
J Exp Bot
, vol.57
, pp. 3619-3626
-
-
Rosti, S.1
Rudi, H.2
Rudi, K.3
Opsahl-Sorteberg, H.G.4
Fahy, B.5
Denyer, K.6
-
38
-
-
14844307622
-
Differential pattern of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase-encoding genes
-
10.1074/jbc.M411713200. 15598655
-
Differential pattern of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase-encoding genes. P Crevillen T Ventriglia F Pinto A Orea A Merida JM Romero, J Biol Chem 2005 280 8143 8149 10.1074/jbc.M411713200 15598655
-
(2005)
J Biol Chem
, vol.280
, pp. 8143-8149
-
-
Crevillen, P.1
Ventriglia, T.2
Pinto, F.3
Orea, A.4
Merida, A.5
Romero, J.M.6
-
39
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
10.1126/science.1128691. 16973872
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). GA Tuskan S Difazio S Jansson J Bohlmann I Grigoriev U Hellsten N Putnam S Ralph S Rombauts A Salamov J Schein L Sterck A Aerts RR Bhalerao RP Bhalerao D Blaudez W Boerjan A Brun A Brunner V Busov M Campbell J Carlson M Chalot J Chapman GL Chen D Cooper PM Coutinho J Couturier S Covert Q Cronk R Cunningham J Davis S Degroeve A Déjardin C Depamphilis J Detter B Dirks I Dubchak S Duplessis J Ehlting B Ellis K Gendler D Goodstein M Gribskov J Grimwood A Groover L Gunter B Hamberger B Heinze Y Helariutta B Henrissat D Holligan R Holt W Huang N Islam-Faridi S Jones M Jones-Rhoades R Jorgensen C Joshi J Kangasjärvi J Karlsson C Kelleher R Kirkpatrick M Kirst A Kohler U Kalluri F Larimer J Leebens-Mack JC Leplé P Locascio Y Lou S Lucas F Martin B Montanini C Napoli DR Nelson C Nelson K Nieminen O Nilsson V Pereda G Peter R Philippe G Pilate A Poliakov J Razumovskaya P Richardson C Rinaldi K Ritland P Rouzé D Ryaboy J Schmutz J Schrader B Segerman H Shin A Siddiqui F Sterky A Terry CJ Tsai E Uberbacher P Unneberg J Vahala K Wall S Wessler G Yang T Yin C Douglas M Marra G Sandberg Y Van de Peer D Rokhsar, Science 2006 313 1596 1604 10.1126/science.1128691 16973872
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
Schein, J.11
Sterck, L.12
Aerts, A.13
Bhalerao, R.R.14
Bhalerao, R.P.15
Blaudez, D.16
Boerjan, W.17
Brun, A.18
Brunner, A.19
Busov, V.20
Campbell, M.21
Carlson, J.22
Chalot, M.23
Chapman, J.24
Chen, G.L.25
Cooper, D.26
Coutinho, P.M.27
Couturier, J.28
Covert, S.29
Cronk, Q.30
Cunningham, R.31
Davis, J.32
Degroeve, S.33
Déjardin, A.34
Depamphilis, C.35
Detter, J.36
Dirks, B.37
Dubchak, I.38
Duplessis, S.39
Ehlting, J.40
Ellis, B.41
Gendler, K.42
Goodstein, D.43
Gribskov, M.44
Grimwood, J.45
Groover, A.46
Gunter, L.47
Hamberger, B.48
Heinze, B.49
Helariutta, Y.50
Henrissat, B.51
Holligan, D.52
Holt, R.53
Huang, W.54
Islam-Faridi, N.55
Jones, S.56
Jones-Rhoades, M.57
Jorgensen, R.58
Joshi, C.59
Kangasjärvi, J.60
Karlsson, J.61
Kelleher, C.62
Kirkpatrick, R.63
Kirst, M.64
Kohler, A.65
Kalluri, U.66
Larimer, F.67
Leebens-Mack, J.68
Leplé, J.C.69
Locascio, P.70
Lou, Y.71
Lucas, S.72
Martin, F.73
Montanini, B.74
Napoli, C.75
Nelson, D.R.76
Nelson, C.77
Nieminen, K.78
Nilsson, O.79
Pereda, V.80
Peter, G.81
Philippe, R.82
Pilate, G.83
Poliakov, A.84
Razumovskaya, J.85
Richardson, P.86
Rinaldi, C.87
Ritland, K.88
Rouzé, P.89
Ryaboy, D.90
Schmutz, J.91
Schrader, J.92
Segerman, B.93
Shin, H.94
Siddiqui, A.95
Sterky, F.96
Terry, A.97
Tsai, C.J.98
Uberbacher, E.99
more..
-
40
-
-
33744822985
-
Widespread genome duplications throughout the history of flowering plants
-
16702410. 10.1101/gr.4825606
-
Widespread genome duplications throughout the history of flowering plants. L Cui PK Wall JH Leebens-Mack BG Lindsay DE Soltis JJ Doyle PS Soltis JE Carlson K Arumuganathan A Barakat VA Albert H Ma CW dePamphilis, Genome Res 2006 16 738 749 16702410 10.1101/gr.4825606
-
(2006)
Genome Res
, vol.16
, pp. 738-749
-
-
Cui, L.1
Wall, P.K.2
Leebens-Mack, J.H.3
Lindsay, B.G.4
Soltis, D.E.5
Doyle, J.J.6
Soltis, P.S.7
Carlson, J.E.8
Arumuganathan, K.9
Barakat, A.10
Albert, V.A.11
Ma, H.12
Depamphilis, C.W.13
-
41
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
10.1007/BF01734359. 7288891
-
Evolutionary trees from DNA sequences: A maximum likelihood approach. J Felsenstein, J Mol Evol 1981 17 368 376 10.1007/BF01734359 7288891
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
42
-
-
0027526039
-
Statistical tests of models of DNA substitution
-
10.1007/BF00166252. 7679448
-
Statistical tests of models of DNA substitution. N Goldman, J Mol Evol 1993 36 182 198 10.1007/BF00166252 7679448
-
(1993)
J Mol Evol
, vol.36
, pp. 182-198
-
-
Goldman, N.1
-
43
-
-
0029469716
-
Maximum likelihood trees from DNA sequences: A peculiar statistical estimation problem
-
10.2307/2413599
-
Maximum likelihood trees from DNA sequences: a peculiar statistical estimation problem. Z Yang N Goldman A Friday, Syst Biol 1995 44 384 399 10.2307/2413599
-
(1995)
Syst Biol
, vol.44
, pp. 384-399
-
-
Yang, Z.1
Goldman, N.2
Friday, A.3
-
44
-
-
0030902563
-
Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
-
10.1126/science.276.5310.227. 9092465
-
Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. JP Huelsenbeck B Rannala, Science 1997 276 227 232 10.1126/science.276. 5310.227 9092465
-
(1997)
Science
, vol.276
, pp. 227-232
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
45
-
-
0037387371
-
Why do paralogs persist? Molecular evolution of CYCLOIDEA and related floral symmetry genes in Antirrhineae (Veronicaceae)
-
10.1093/molbev/msg063. 12679544
-
Why do paralogs persist? Molecular evolution of CYCLOIDEA and related floral symmetry genes in Antirrhineae (Veronicaceae). LC Hileman DA Baum, Mol Biol Evol 2003 20 591 600 10.1093/molbev/msg063 12679544
-
(2003)
Mol Biol Evol
, vol.20
, pp. 591-600
-
-
Hileman, L.C.1
Baum, D.A.2
-
46
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected site
-
15514074. 10.1534/genetics.104.031153
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected site. WS Wong Z Yang N Goldman R Nielsen, Genetics 2004 168 1041 1051 15514074 10.1534/genetics.104.031153
-
(2004)
Genetics
, vol.168
, pp. 1041-1051
-
-
Wong, W.S.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
47
-
-
33748784344
-
A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences
-
10.1093/molbev/msl056. 16864604
-
A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences. X Gu, Mol Biol Evol 2006 23 1937 1945 10.1093/molbev/msl056 16864604
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1937-1945
-
-
Gu, X.1
-
48
-
-
0036205440
-
DIVERGE: Phylogeny-based analysis for functional-structural divergence of a protein family
-
10.1093/bioinformatics/18.3.500. 11934757
-
DIVERGE: Phylogeny-based analysis for functional-structural divergence of a protein family. X Gu K Vander Velden, Bioinformatics 2002 18 500 501 10.1093/bioinformatics/18.3.500 11934757
-
(2002)
Bioinformatics
, vol.18
, pp. 500-501
-
-
Gu, X.1
Velden, K.V.2
-
49
-
-
15444377849
-
Crystal structure of potato tuber ADP-glucose pyrophosphorylase
-
15692569. 10.1038/sj.emboj.7600551
-
Crystal structure of potato tuber ADP-glucose pyrophosphorylase. X Jin MA Ballicora J Preiss JH Geiger, EMBO J 2005 24 694 704 15692569 10.1038/sj.emboj.7600551
-
(2005)
EMBO J
, vol.24
, pp. 694-704
-
-
Jin, X.1
Ballicora, M.A.2
Preiss, J.3
Geiger, J.H.4
-
50
-
-
27244462783
-
Truncated forms of the recombinant Escherichia coli ADP-glucose pyrophosphorylase: The importance of the N-terminal region for allosteric activation and inhibition
-
10.1006/abbi.2001.2327. 11339804
-
Truncated forms of the recombinant Escherichia coli ADP-glucose pyrophosphorylase: the importance of the N-terminal region for allosteric activation and inhibition. MX Wu J Preiss, Arch Biochem Biophys 2001 389 159 165 10.1006/abbi.2001.2327 11339804
-
(2001)
Arch Biochem Biophys
, vol.389
, pp. 159-165
-
-
Wu, M.X.1
Preiss, J.2
-
52
-
-
0032052136
-
N- and C-terminal peptide sequences are essential for enzyme assembly, allosteric, and/or catalytic properties of ADP-glucose pyrophosphorylase
-
10.1046/j.1365-313X.1998.00102.x. 9628013
-
N- and C-terminal peptide sequences are essential for enzyme assembly, allosteric, and/or catalytic properties of ADP-glucose pyrophosphorylase. MJ Laughlin SE Chantler TW Okita, Plant J 1998 14 159 168 10.1046/j.1365-313X.1998. 00102.x 9628013
-
(1998)
Plant J
, vol.14
, pp. 159-168
-
-
Laughlin, M.J.1
Chantler, S.E.2
Okita, T.W.3
-
53
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
10101175
-
Preservation of duplicate genes by complementary, degenerative mutations. A Force M Lynch FB Pickett A Amores Y Yan J Postlethwait, Genetics 1999 151 1531 1545 10101175
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.5
Postlethwait, J.6
-
54
-
-
26444488575
-
Expression divergence between duplicate genes
-
10.1016/j.tig.2005.08.006. 16140417
-
Expression divergence between duplicate genes. WH Li J Yang X Gu, Trends Genet 2005 21 602 607 10.1016/j.tig.2005.08.006 16140417
-
(2005)
Trends Genet
, vol.21
, pp. 602-607
-
-
Li, W.H.1
Yang, J.2
Gu, X.3
-
55
-
-
30744464824
-
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis
-
10.1093/molbev/msj051. 16280546
-
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. JM Duarte L Cui PK Wall Q Zhang X Zhang J Leebens-Mack H Ma N Altman CW dePamphilis, Mol Biol Evol 2006 23 469 478 10.1093/molbev/msj051 16280546
-
(2006)
Mol Biol Evol
, vol.23
, pp. 469-478
-
-
Duarte, J.M.1
Cui, L.2
Wall, P.K.3
Zhang, Q.4
Zhang, X.5
Leebens-Mack, J.6
Ma, H.7
Altman, N.8
Depamphilis, C.W.9
-
56
-
-
38649142412
-
The limits of subfunctionalization
-
17988397. 10.1186/1471-2148-7-213
-
The limits of subfunctionalization. T MacCarthy A Bergman, BMC Evol Biol 2007 7 213 17988397 10.1186/1471-2148-7-213
-
(2007)
BMC Evol Biol
, vol.7
, pp. 213
-
-
MacCarthy, T.1
Bergman, A.2
-
57
-
-
15544389841
-
Rapid Subfunctionalization Accompanied by Prolonged and Substantial Neofunctionalization in Duplicate Gene Evolution
-
15654095. 10.1534/genetics.104.037051
-
Rapid Subfunctionalization Accompanied by Prolonged and Substantial Neofunctionalization in Duplicate Gene Evolution. X He J Zhang, Genetics 2005 169 1157 1164 15654095 10.1534/genetics.104.037051
-
(2005)
Genetics
, vol.169
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
58
-
-
0035546157
-
Gene expression and molecular evolution
-
10.1016/S0959-437X(00)00250-1. 11682310
-
Gene expression and molecular evolution. H Akashi, Curr Opin Genet Dev 2001 11 660 666 10.1016/S0959-437X(00)00250-1 11682310
-
(2001)
Curr Opin Genet Dev
, vol.11
, pp. 660-666
-
-
Akashi, H.1
-
59
-
-
0033977618
-
Determinants of substitution rates in mammalian genes, expression pattern affects selection intensity but not mutation rate
-
10666707
-
Determinants of substitution rates in mammalian genes, expression pattern affects selection intensity but not mutation rate. L Duret D Mouchiroud, Mol Biol Evol 2000 17 68 74 10666707
-
(2000)
Mol Biol Evol
, vol.17
, pp. 68-74
-
-
Duret, L.1
Mouchiroud, D.2
-
60
-
-
4143122090
-
Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata
-
10.1093/molbev/msh191. 15201397
-
Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. SI Wright CB Yau M Looseley BC Meyers, Mol Biol Evol 2004 21 1719 1726 10.1093/molbev/msh191 15201397
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1719-1726
-
-
Wright, S.I.1
Yau, C.B.2
Looseley, M.3
Meyers, B.C.4
-
61
-
-
15444367832
-
Resurrecting the ancestral enzymatic role of a modulatory subunit
-
10.1074/jbc.M413540200. 15632142
-
Resurrecting the ancestral enzymatic role of a modulatory subunit. MA Ballicora JR Dubay CH Devillers J Preiss, J Biol Chem 2005 280 10189 10195 10.1074/jbc.M413540200 15632142
-
(2005)
J Biol Chem
, vol.280
, pp. 10189-10195
-
-
Ballicora, M.A.1
Dubay, J.R.2
Devillers, C.H.3
Preiss, J.4
-
62
-
-
0018785975
-
Biosynthesis of bacterial glycogen. the nature of the binding of substrates and effectors to ADP-glucose synthase
-
363717
-
Biosynthesis of bacterial glycogen. The nature of the binding of substrates and effectors to ADP-glucose synthase. TH Haugen J Preiss, J Biol Chem 1979 254 127 136 363717
-
(1979)
J Biol Chem
, vol.254
, pp. 127-136
-
-
Haugen, T.H.1
Preiss, J.2
-
63
-
-
34347372235
-
ATP binding site in the plant ADP-glucose pyrophosphorylase large subunit
-
10.1016/j.febslet.2006.11.029. 17137579
-
ATP binding site in the plant ADP-glucose pyrophosphorylase large subunit. SK Hwang S Hamada TW Okita, FEBS Lett 2006 580 6741 6748 10.1016/j.febslet.2006.11.029 17137579
-
(2006)
FEBS Lett
, vol.580
, pp. 6741-6748
-
-
Hwang, S.K.1
Hamada, S.2
Okita, T.W.3
-
64
-
-
0032161364
-
ADP-Glucose pyrophosphorylase from potato tubers. Site-directed mutagenesis studies of the regulatory sites
-
9733546. 10.1104/pp.118.1.265
-
ADP-Glucose pyrophosphorylase from potato tubers. Site-directed mutagenesis studies of the regulatory sites. MA Ballicora Y Fu NM Nesbitt J Preiss, Plant Physiol 1998 118 265 274 9733546 10.1104/pp.118.1.265
-
(1998)
Plant Physiol
, vol.118
, pp. 265-274
-
-
Ballicora, M.A.1
Fu, Y.2
Nesbitt, N.M.3
Preiss, J.4
-
65
-
-
0035798634
-
Analysis of allosteric effector binding sites of potato ADP-glucose pyrophosphorylase through reverse genetics
-
10.1074/jbc.M106310200. 11524424
-
Analysis of allosteric effector binding sites of potato ADP-glucose pyrophosphorylase through reverse genetics. IH Kavakli JS Park CJ Slattery PR Salamone J Frohlick TW Okita, J Biol Chem 2001 276 40834 40840 10.1074/jbc.M106310200 11524424
-
(2001)
J Biol Chem
, vol.276
, pp. 40834-40840
-
-
Kavakli, I.H.1
Park, J.S.2
Slattery, C.J.3
Salamone, P.R.4
Frohlick, J.5
Okita, T.W.6
-
66
-
-
0030579802
-
A single mutation that increases maize seed weight
-
8650177. 10.1073/pnas.93.12.5824
-
A single mutation that increases maize seed weight. MJ Giroux J Shaw G Barry BG Cobb TW Greene TW Okita LC Hannah, Proc Natl Acad Sci USA 1996 93 5824 5829 8650177 10.1073/pnas.93.12.5824
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 5824-5829
-
-
Giroux, M.J.1
Shaw, J.2
Barry, G.3
Cobb, B.G.4
Greene, T.W.5
Okita, T.W.6
Hannah, L.C.7
-
67
-
-
0027398378
-
Expression of the potato tuber ADP-glucose pyrophosphorylase in Escherichia coli
-
8380404
-
Expression of the potato tuber ADP-glucose pyrophosphorylase in Escherichia coli. A Iglesias GF Barry C Meyer L Bloksberg P Nakata T Greene MJ Laughlin TW Okita GM Kishore J Preiss, J Biol Chem 1993 268 1081 1086 8380404
-
(1993)
J Biol Chem
, vol.268
, pp. 1081-1086
-
-
Iglesias, A.1
Barry, G.F.2
Meyer, C.3
Bloksberg, L.4
Nakata, P.5
Greene, T.6
Laughlin, M.J.7
Okita, T.W.8
Kishore, G.M.9
Preiss, J.10
-
68
-
-
3242810318
-
MEGA 3: Integrated Software for Molecular Evolutionary Genetics Analysis and Sequence Alignment
-
10.1093/bib/5.2.150
-
MEGA 3: Integrated Software for Molecular Evolutionary Genetics Analysis and Sequence Alignment. S Kumar K Tamura M Nei, Brief Bioinf 2004 5 150 163 10.1093/bib/5.2.150
-
(2004)
Brief Bioinf
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
69
-
-
33750387249
-
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
-
The University of Texas at Austin
-
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. DJ Zwickl, Ph.D. dissertation The University of Texas at Austin 2006
-
(2006)
Ph.D. Dissertation
-
-
Zwickl, D.J.1
-
70
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
10.1093/bioinformatics/btl446. 16928733
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. A Stamatakis, Bioinformatics 2006 22 2688 2690 10.1093/bioinformatics/btl446 16928733
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
71
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
1633570
-
The rapid generation of mutation data matrices from protein sequences. DT Jones WR Taylor JM Thornton, CABIOS 1992 8 275 282 1633570
-
(1992)
CABIOS
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
72
-
-
0000461280
-
Confidence-limits on phylogenies: An approach using the bootstrap
-
Confidence-limits on phylogenies: An approach using the bootstrap. J Felsenstein, Evolution Int J Org Evolution 1985 39 783 791
-
(1985)
Evolution Int J Org Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
73
-
-
0000228203
-
A model of evolutionary change in proteins
-
Silver Springs, MD, National Biomedical Research Foundation Dayhoff MO
-
A model of evolutionary change in proteins. MO Dayhoff RM Schwartz BC Orcutt, Atlas of Protein Sequence and Structure Silver Springs, MD, National Biomedical Research Foundation, Dayhoff MO, 1978 5 345 352
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
74
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
9367129
-
PAML: a program package for phylogenetic analysis by maximum likelihood. Z Yang, CABIOS 1997 13 555 556 9367129
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
75
-
-
0002442997
-
GeneTree: A tool for exploring gene family evolution
-
Dordrecht, Kluwer Academic Press Sankoff D, Nadeau J
-
GeneTree: a tool for exploring gene family evolution. RDM Page JA Cotton, Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment, and the Evolution of Gene Families Dordrecht, Kluwer Academic Press, Sankoff D, Nadeau J, 2000 525 536
-
(2000)
Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment, and the Evolution of Gene Families
, pp. 525-536
-
-
Page, R.D.M.1
Cotton, J.A.2
-
76
-
-
0031774059
-
GeneTree: Comparing gene and species phylogenies using reconciled trees
-
10.1093/bioinformatics/14.9.819. 9918954
-
GeneTree: comparing gene and species phylogenies using reconciled trees. RDM Page, Bioinformatics 1998 14 819 820 10.1093/bioinformatics/14.9.819 9918954
-
(1998)
Bioinformatics
, vol.14
, pp. 819-820
-
-
Page, R.D.M.1
-
77
-
-
0033692378
-
NOTUNG: A program for dating gene duplications and optimizing gene family trees
-
10.1089/106652700750050871. 11108472
-
NOTUNG: A program for dating gene duplications and optimizing gene family trees. K Chen D Durand M Farach-Colton, Journal of Computational Biology 2000 7 429 447 10.1089/106652700750050871 11108472
-
(2000)
Journal of Computational Biology
, vol.7
, pp. 429-447
-
-
Chen, K.1
Durand, D.2
Farach-Colton, M.3
-
78
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
10.2307/2992540
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. DM Hillis JJ Bull, Syst Biol 1993 42 182 192 10.2307/2992540
-
(1993)
Syst Biol
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
79
-
-
0037314098
-
R8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
10.1093/bioinformatics/19.2.301. 12538260
-
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. MJ Sanderson, Bioinformatics 2003 19 301 302 10.1093/bioinformatics/19.2.301 12538260
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
80
-
-
0033692959
-
Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus a
-
11080365
-
Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A. Z Yang, J Mol Evol 2000 51 423 432 11080365
-
(2000)
J Mol Evol
, vol.51
, pp. 423-432
-
-
Yang, Z.1
-
81
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
12032247
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Z Yang R Nielsen, Mol Biol Evol 2002 19 908 917 12032247
-
(2002)
Mol Biol Evol
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
82
-
-
16344378246
-
Bayes empirical Bayes inference of amino acid sites under positive selection
-
10.1093/molbev/msi097. 15689528
-
Bayes empirical Bayes inference of amino acid sites under positive selection. Z Yang WSW Wong R Nielsen, Mol Biol Evol 2005 22 1107 1118 10.1093/molbev/msi097 15689528
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
83
-
-
10344262074
-
Phylogeny and substitution rates of angiosperm actin genes
-
8896372
-
Phylogeny and substitution rates of angiosperm actin genes. M de Sa G Drouin, Mol Biol Evol 1996 13 1198 1212 8896372
-
(1996)
Mol Biol Evol
, vol.13
, pp. 1198-1212
-
-
De Sa, M.1
Drouin, G.2
-
84
-
-
0034636168
-
Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis
-
10759555. 10.1073/pnas.070430597
-
Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. D Grant P Cregan RC Shoemaker, Proc Natl Acad Sci USA 2000 97 4168 4173 10759555 10.1073/pnas.070430597
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 4168-4173
-
-
Grant, D.1
Cregan, P.2
Shoemaker, R.C.3
-
85
-
-
0034255126
-
Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
-
10908680. 10.1073/pnas.160271297
-
Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny. HM Ku T Vision J Liu SD Tanksley, Proc Natl Acad Sci USA 2000 97 9121 9126 10908680 10.1073/pnas.160271297
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 9121-9126
-
-
Ku, H.M.1
Vision, T.2
Liu, J.3
Tanksley, S.D.4
-
86
-
-
0035823864
-
Evolution of the angiosperms: Calibrating the family tree
-
11674868. 10.1098/rspb.2001.1782
-
Evolution of the angiosperms: calibrating the family tree. N Wikstrom V Savolainen MW Chase, Proc Biol Sci 2001 268 2211 2220 11674868 10.1098/rspb.2001.1782
-
(2001)
Proc Biol Sci
, vol.268
, pp. 2211-2220
-
-
Wikstrom, N.1
Savolainen, V.2
Chase, M.W.3
-
87
-
-
0036213939
-
Evolutionary dynamics of grass genomes
-
10.1046/j.1469-8137.2002.00352.x
-
Evolutionary dynamics of grass genomes. BS Gaut, New phytologist 2002 154 15 28 10.1046/j.1469-8137.2002.00352.x
-
(2002)
New Phytologist
, vol.154
, pp. 15-28
-
-
Gaut, B.S.1
-
88
-
-
7444229180
-
Estimating genome conservation between crop and model legume species
-
15489274. 10.1073/pnas.0402251101
-
Estimating genome conservation between crop and model legume species. HK Choi JH Mun DJ Kim H Zhu JM Baek J Mudge B Roe N Ellis J Doyle GB Kiss ND Young DR Cook, Proc Natl Acad Sci USA 2004 101 15289 15294 15489274 10.1073/pnas.0402251101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15289-15294
-
-
Choi, H.K.1
Mun, J.H.2
Kim, D.J.3
Zhu, H.4
Baek, J.M.5
Mudge, J.6
Roe, B.7
Ellis, N.8
Doyle, J.9
Kiss, G.B.10
Young, N.D.11
Cook, D.R.12
-
89
-
-
2442712340
-
Mining EST databases to resolve evolutionary events in major crop species
-
10.1139/g04-047. 15499401
-
Mining EST databases to resolve evolutionary events in major crop species. JA Schlueter P Dixon C Granger D Grant L Clark JJ Doyle RC Shoemaker, Genome 2004 47 868 876 10.1139/g04-047 15499401
-
(2004)
Genome
, vol.47
, pp. 868-876
-
-
Schlueter, J.A.1
Dixon, P.2
Granger, C.3
Grant, D.4
Clark, L.5
Doyle, J.J.6
Shoemaker, R.C.7
-
90
-
-
33747465247
-
-
in The Tree of Life Web Project, http://tolweb.org/ Version 03, 2005
-
Angiosperms, Flowering Plants. P Soltis D Soltis C Edwards, http://tolweb.org/Angiosperms/20646/2005.06.03 in The Tree of Life Web Project, http://tolweb.org/ Version 03, 2005
-
Angiosperms, Flowering Plants
-
-
Soltis, P.1
Soltis, D.2
Edwards, C.3
-
91
-
-
33745483813
-
Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results
-
16677401. 10.1186/1471-2164-7-110
-
Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results. C Bar-Or M Bar-Eyal TZ Gal Y Kapulnik H Czosnek H Koltai, BMC Genomics 2006 7 110 16677401 10.1186/1471-2164-7-110
-
(2006)
BMC Genomics
, vol.7
, pp. 110
-
-
Bar-Or, C.1
Bar-Eyal, M.2
Gal, T.Z.3
Kapulnik, Y.4
Czosnek, H.5
Koltai, H.6
-
92
-
-
33745487720
-
Sequence-Level Analysis of the Diploidization Process in the Triplicated FLOWERING LOCUS C Region of Brassica rapa
-
16632644. 10.1105/tpc.105.040535
-
Sequence-Level Analysis of the Diploidization Process in the Triplicated FLOWERING LOCUS C Region of Brassica rapa. TJ Yang JS Kim SJ Kwon KB Lim BS Choi JA Kim M Jin JY Park MH Lim HI Kim YP Lim JJ Kang JH Hong CB Kim J Bhak I Bancroft BS Park, Plant Cell 2006 18 1339 1347 16632644 10.1105/tpc.105.040535
-
(2006)
Plant Cell
, vol.18
, pp. 1339-1347
-
-
Yang, T.J.1
Kim, J.S.2
Kwon, S.J.3
Lim, K.B.4
Choi, B.S.5
Kim, J.A.6
Jin, M.7
Park, J.Y.8
Lim, M.H.9
Kim, H.I.10
Lim, Y.P.11
Kang, J.J.12
Hong, J.H.13
Kim, C.B.14
Bhak, J.15
Bancroft, I.16
Park, B.S.17
-
93
-
-
21044456647
-
Fossil evidence and phylogeny: The age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits
-
10.3732/ajb.91.10.1666
-
Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits. WL Crepet KC Nixon MA Gandolfo, Am J Botany 2004 91 1666 1682 10.3732/ajb.91.10.1666
-
(2004)
Am J Botany
, vol.91
, pp. 1666-1682
-
-
Crepet, W.L.1
Nixon, K.C.2
Gandolfo, M.A.3
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