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Volumn 7, Issue , 2006, Pages

Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; PLANT RNA;

EID: 33745483813     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-110     Document Type: Article
Times cited : (40)

References (43)
  • 1
    • 22244458625 scopus 로고    scopus 로고
    • Applications of DNA microarrays in biology
    • Stoughton RB: Applications of DNA microarrays in biology. Annu Rev Biochem 2005, 74:53-82.
    • (2005) Annu Rev Biochem , vol.74 , pp. 53-82
    • Stoughton, R.B.1
  • 2
    • 0037313182 scopus 로고    scopus 로고
    • Evolution of gene expression in the Drosophila melanogaster subgroup
    • Rifkin SA, Kim J, White KP: Evolution of gene expression in the Drosophila melanogaster subgroup. Nature Genetics 2003, 33:138-144.
    • (2003) Nature Genetics , vol.33 , pp. 138-144
    • Rifkin, S.A.1    Kim, J.2    White, K.P.3
  • 3
    • 9444231671 scopus 로고    scopus 로고
    • Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray
    • Renn SC, Aubin-Horth N, Hofmann HA: Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics 2004,5:42.
    • (2004) BMC Genomics , vol.5 , pp. 42
    • Renn, S.C.1    Aubin-Horth, N.2    Hofmann, H.A.3
  • 5
    • 5444242571 scopus 로고    scopus 로고
    • Microarrays in ecological research: A case study of a cDNA microarray for plant-herbivore interactions
    • Held M, Gase K, Baldwin IT: Microarrays in ecological research: a case study of a cDNA microarray for plant-herbivore interactions. BMC Ecol 2004, 4:13.
    • (2004) BMC Ecol , vol.4 , pp. 13
    • Held, M.1    Gase, K.2    Baldwin, I.T.3
  • 6
    • 18744366950 scopus 로고    scopus 로고
    • Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora
    • Nowrousian M, Ringelberg C, Dunlap JC, Loros JJ, Kuck U: Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora. Mol Genet Genomics 2005, 273:137-49.
    • (2005) Mol Genet Genomics , vol.273 , pp. 137-149
    • Nowrousian, M.1    Ringelberg, C.2    Dunlap, J.C.3    Loros, J.J.4    Kuck, U.5
  • 7
    • 1542375217 scopus 로고    scopus 로고
    • Ecotoxicogenomics: The challenge of integrating genomics into aquatic and terrestrial ecotoxicology
    • Snape JR. Maund SJ, Pickford DB, Hutchinson TH: Ecotoxicogenomics: the challenge of integrating genomics into aquatic and terrestrial ecotoxicology. Aquat Toxicol 2004, 67:143-154.
    • (2004) Aquat Toxicol , vol.67 , pp. 143-154
    • Snape, J.R.1    Maund, S.J.2    Pickford, D.B.3    Hutchinson, T.H.4
  • 9
    • 19844365733 scopus 로고    scopus 로고
    • Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
    • Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP: Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res 2005, 15:674-680.
    • (2005) Genome Res , vol.15 , pp. 674-680
    • Gilad, Y.1    Rifkin, S.A.2    Bertone, P.3    Gerstein, M.4    White, K.P.5
  • 10
    • 0037504137 scopus 로고    scopus 로고
    • Sex-dependent gene expression and evolution of the Drosophila transcriptome
    • Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL: Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 2003, 300:1742-1745.
    • (2003) Science , vol.300 , pp. 1742-1745
    • Ranz, J.M.1    Castillo-Davis, C.I.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 11
    • 4544237063 scopus 로고    scopus 로고
    • Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform - Preliminary results
    • Shah G, Azizian M, Bruch D, Mehta R, Kittur D: Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform - preliminary results. Clin Transplant 2004, 18(Suppl 12):76-80.
    • (2004) Clin Transplant , vol.18 , Issue.SUPPL. 12 , pp. 76-80
    • Shah, G.1    Azizian, M.2    Bruch, D.3    Mehta, R.4    Kittur, D.5
  • 12
    • 27144457780 scopus 로고    scopus 로고
    • Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae
    • Moore S, Payton P, Wright M, Tanksley S, Giovannoni J: Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae. J Exp Bot 2005, 56:2885-2895.
    • (2005) J Exp Bot , vol.56 , pp. 2885-2895
    • Moore, S.1    Payton, P.2    Wright, M.3    Tanksley, S.4    Giovannoni, J.5
  • 14
    • 2342509711 scopus 로고    scopus 로고
    • Identifcation and handling of artifactual gene expression profiles emerging in microarray hybridization experiments
    • Brodsky L, Leontovich A, Shtutman M, Feinstein E: Identifcation and handling of artifactual gene expression profiles emerging in microarray hybridization experiments. Nucl Acids Res 2004, 32:e46.
    • (2004) Nucl Acids Res , vol.32
    • Brodsky, L.1    Leontovich, A.2    Shtutman, M.3    Feinstein, E.4
  • 15
    • 25444486428 scopus 로고    scopus 로고
    • In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology
    • Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG: In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology. BMC Genomics 2005, 6:62.
    • (2005) BMC Genomics , vol.6 , pp. 62
    • Grigoryev, D.N.1    Ma, S.F.2    Simon, B.A.3    Irizarry, R.A.4    Ye, S.Q.5    Garcia, J.G.6
  • 16
    • 24944496956 scopus 로고    scopus 로고
    • Gene expression profiling of NMU-induced rat mammary tumors: Cross species comparison with human breast cancer
    • Chan MM, Lu X, Merchant FM, Iglehart JD, Miron PL: Gene expression profiling of NMU-induced rat mammary tumors: cross species comparison with human breast cancer. Carcinogenesis 2005, 26:1343-1353.
    • (2005) Carcinogenesis , vol.26 , pp. 1343-1353
    • Chan, M.M.1    Lu, X.2    Merchant, F.M.3    Iglehart, J.D.4    Miron, P.L.5
  • 17
    • 33645331422 scopus 로고    scopus 로고
    • Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species
    • Hammond JP, Broadley MR, Craigon DJ, Higgins J, Emmerson ZF, Townsend HJ, White PJ, May ST: Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. Plant Methods 2005, 1:10.
    • (2005) Plant Methods , vol.1 , pp. 10
    • Hammond, J.P.1    Broadley, M.R.2    Craigon, D.J.3    Higgins, J.4    Emmerson, Z.F.5    Townsend, H.J.6    White, P.J.7    May, S.T.8
  • 18
    • 3142674789 scopus 로고    scopus 로고
    • A method for cross-species gene expression analysis with high-density oligonucleotide arrays
    • Ji W, Zhou W, Gregg K, Yu N, Davis S, Sara Davis S: A method for cross-species gene expression analysis with high-density oligonucleotide arrays. Nucl Acids Res 2004, 32:e93.
    • (2004) Nucl Acids Res , vol.32
    • Ji, W.1    Zhou, W.2    Gregg, K.3    Yu, N.4    Davis, S.5    Sara Davis, S.6
  • 19
    • 14844326652 scopus 로고    scopus 로고
    • A Xenopus tropicalis oligonucleotide microarray works across species using RNA from Xenopus laevis
    • Chalmers AD, Goldstone K, Smith JC, Gilchrist M, Amaya E, Papalopulu N: A Xenopus tropicalis oligonucleotide microarray works across species using RNA from Xenopus laevis. Mech Dev 2005, 122:355-363.
    • (2005) Mech Dev , vol.122 , pp. 355-363
    • Chalmers, A.D.1    Goldstone, K.2    Smith, J.C.3    Gilchrist, M.4    Amaya, E.5    Papalopulu, N.6
  • 21
    • 3242720061 scopus 로고    scopus 로고
    • Microarray analysis of orthologous genes: Conservation of the translational machinery across species at the sequence and expression level
    • Jimenez JL, Mitchell MP, Sgouros JG: Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level. Genome Biol 2003, 4:R4.
    • (2003) Genome Biol , vol.4
    • Jimenez, J.L.1    Mitchell, M.P.2    Sgouros, J.G.3
  • 23
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • Oleksiak MF, Churchill GA, Crawford DL: Variation in gene expression within and among natural populations. Nat Genet 2002, 32:261-266.
    • (2002) Nat Genet , vol.32 , pp. 261-266
    • Oleksiak, M.F.1    Churchill, G.A.2    Crawford, D.L.3
  • 26
    • 84872267926 scopus 로고    scopus 로고
    • Gene Expression Omnibus
    • Gene Expression Omnibus [http://www.ncbi.nlm.nih.gov/geo/]
  • 29
    • 0032703998 scopus 로고    scopus 로고
    • d2_cluster: A validated method for clustering EST and full-length cDNAsequences
    • Burke J, Davison D, Hide W: d2_cluster: a validated method for clustering EST and full-length cDNAsequences. Genome Res 1999, 9:1135-1142.
    • (1999) Genome Res , vol.9 , pp. 1135-1142
    • Burke, J.1    Davison, D.2    Hide, W.3
  • 30
    • 10344262074 scopus 로고    scopus 로고
    • Phylogeny and substitution rates of angiosperm actin genes
    • de Sa M, Drouin G: Phylogeny and substitution rates of angiosperm actin genes. Mol Biol Evol 1996, 13:1198-1212.
    • (1996) Mol Biol Evol , vol.13 , pp. 1198-1212
    • de Sa, M.1    Drouin, G.2
  • 32
    • 14644401184 scopus 로고    scopus 로고
    • A broad characterization of the transcriptional profile of the compatible tomato response to the plant parasitic root knot nematode Meloidogyne javanica
    • Bar-Or C, Kapulnik Y, Koltai H: A broad characterization of the transcriptional profile of the compatible tomato response to the plant parasitic root knot nematode Meloidogyne javanica. Eur J Plant Pathol 2005, 111:181-192.
    • (2005) Eur J Plant Pathol , vol.111 , pp. 181-192
    • Bar-Or, C.1    Kapulnik, Y.2    Koltai, H.3
  • 33
    • 9144250533 scopus 로고    scopus 로고
    • How consistent are expression chip platforms?
    • Jordan BR: How consistent are expression chip platforms? Bioessays 2004, 26:1236-1242.
    • (2004) Bioessays , vol.26 , pp. 1236-1242
    • Jordan, B.R.1
  • 34
    • 84872267289 scopus 로고    scopus 로고
    • NCBI Tutorial
    • NCBI Tutorial [http://www.ncbi.nlm.nih.gov/BLAST/tutorial/Altschul-I.html]
  • 35
    • 84872261800 scopus 로고    scopus 로고
    • Center for Gene Expression Profiling
    • Center for Gene Expression Profiling [http://bti.cornell.edu/CGEP/CGEP.html]
  • 36
    • 84872269778 scopus 로고    scopus 로고
    • NSF Potato Functional Genomics
    • NSF Potato Functional Genomics [http://www.tigr.org/tdb/potato/microarray_comp.shtml]
  • 37
    • 84872263901 scopus 로고    scopus 로고
    • Solanaceae Genomics Network
    • Solanaceae Genomics Network [http://www.sgn.cornell.edu/]
  • 38
    • 0000123674 scopus 로고
    • A comparison of methods of collecting inocula of Meloidogyne spp., including a new technique
    • Hussey RS, Barker KR: A comparison of methods of collecting inocula of Meloidogyne spp., including a new technique. Plant Disease Reporter 1973, 57:1025-1028.
    • (1973) Plant Disease Reporter , vol.57 , pp. 1025-1028
    • Hussey, R.S.1    Barker, K.R.2
  • 39
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill GA: Fundamentals of experimental design for cDNA microarrays. Nat Genet 2002:490-495.
    • (2002) Nat Genet , pp. 490-495
    • Churchill, G.A.1
  • 41
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth GK, Speed T: Normalization of cDNA microarray data. Methods 2003, 31:265-273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 43
    • 84872270795 scopus 로고    scopus 로고
    • NSF Potato Functional Genomics
    • NSF Potato Functional Genomics [http://www.tigr.org/tdb/potato/]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.