-
1
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi, P. and Long, A.D. 2001. A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes. Bioinformatics 17: 509-519.
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
2
-
-
0001677717
-
Controlling the false discovery rate - A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. 1995. Controlling the false discovery rate - A practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57: 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
3
-
-
0035871810
-
Resolution of pluripotential intermediates in murine hematopoietic differentiation by global complementary DNA amplification from single cells: Confirmation of assignments by expression profiling of cytokine receptor transcripts
-
Billia, F., Barbara, M., McEwen, J., Trevisan, M., and Iscove, N.N. 2001. Resolution of pluripotential intermediates in murine hematopoietic differentiation by global complementary DNA amplification from single cells: Confirmation of assignments by expression profiling of cytokine receptor transcripts. Blood 97: 2257-2268.
-
(2001)
Blood
, vol.97
, pp. 2257-2268
-
-
Billia, F.1
Barbara, M.2
McEwen, J.3
Trevisan, M.4
Iscove, N.N.5
-
4
-
-
0036571462
-
Assessment of the parallelization approach of d2uster for high-performance sequence clustering
-
Carpenter, J.E., Christoffels, A., Weinbach, Y., and Hide, W.A. 2002. Assessment of the parallelization approach of d2uster for high-performance sequence clustering. J. Comput. Chem. 23: 755-757.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 755-757
-
-
Carpenter, J.E.1
Christoffels, A.2
Weinbach, Y.3
Hide, W.A.4
-
5
-
-
0032754201
-
Psx homeobox gene is X-linked and specifically expressed in trophoblast cells of mouse placenta
-
Chun, J.Y., Han, Y.J., and Ahn, K.Y. 1999. Psx homeobox gene is X-linked and specifically expressed in trophoblast cells of mouse placenta. Dev. Dyn. 216: 257-266.
-
(1999)
Dev. Dyn.
, vol.216
, pp. 257-266
-
-
Chun, J.Y.1
Han, Y.J.2
Ahn, K.Y.3
-
6
-
-
0028618660
-
Implantation and the placenta: Key pieces of the development puzzle
-
Cross, J.C., Werb, Z., and Fisher, S.J. 1994. Implantation and the placenta: Key pieces of the development puzzle. Science 266: 1508-1518.
-
(1994)
Science
, vol.266
, pp. 1508-1518
-
-
Cross, J.C.1
Werb, Z.2
Fisher, S.J.3
-
7
-
-
0031726355
-
A new member of the mouse prolactin (PRL)-like protein-C subfamily, PRL-like protein-C α: Structure and expression
-
Dai, G., Chapman, B.M., Liu, B., Orwig, K.E., Wang, D., White, R.A., Preuett, B., and Soares, M.J. 1998. A new member of the mouse prolactin (PRL)-like protein-C subfamily, PRL-like protein-C α: Structure and expression. Endocrinology 139: 5157-5163.
-
(1998)
Endocrinology
, vol.139
, pp. 5157-5163
-
-
Dai, G.1
Chapman, B.M.2
Liu, B.3
Orwig, K.E.4
Wang, D.5
White, R.A.6
Preuett, B.7
Soares, M.J.8
-
8
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown, P.O., and Botstein, D. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad.Sci. 95: 14863-14868.
-
(1998)
Proc. Natl. Acad.Sci.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
9
-
-
0025116780
-
Developmental roles for growth factor-regulated secreted proteins
-
Hamilton, R.T. and Millis, A.J. 1990. Developmental roles for growth factor-regulated secreted proteins. Curr. Top. Dev. Biol. 24: 193-218.
-
(1990)
Curr. Top. Dev. Biol.
, vol.24
, pp. 193-218
-
-
Hamilton, R.T.1
Millis, A.J.2
-
10
-
-
0026036396
-
Gene expression of cytokeratin endo A and endo B during embryogenesis and in adult tissues of mouse
-
Hashido, K., Morita, T., Matsushiro, A., and Nozaki, M. 1991. Gene expression of cytokeratin endo A and endo B during embryogenesis and in adult tissues of mouse. Exp. Cell Res. 192: 203-212.
-
(1991)
Exp. Cell Res.
, vol.192
, pp. 203-212
-
-
Hashido, K.1
Morita, T.2
Matsushiro, A.3
Nozaki, M.4
-
11
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes, T.R., Mao, M., Jones, A.R., Burchard, J., Marton, M.J., Shannon, K.W., Lefkowitz, S.M., Ziman, M., Schelter, J.M., Meyer, M.R., et al. 2001. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19: 342-347.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
-
12
-
-
0035035752
-
Expression of genes involved in mammalian meiosis during the transition from egg to embryo
-
Hwang, S.Y., Oh, B., Knowles, B.B., Solter, D., and Lee, J.S. 2001. Expression of genes involved in mammalian meiosis during the transition from egg to embryo. Mol. Reprod. Dev. 59: 144-158.
-
(2001)
Mol. Reprod. Dev.
, vol.59
, pp. 144-158
-
-
Hwang, S.Y.1
Oh, B.2
Knowles, B.B.3
Solter, D.4
Lee, J.S.5
-
13
-
-
0035041657
-
Verification and initial annotation of the NIA mouse 15K cDNA clone set
-
Kargul, G.J., Dudekula, D.B., Qian, Y., Lim, M.K., Jaradat, S.A., Tanaka, T.S., Carter, M.G., and Ko, M.S. 2001. Verification and initial annotation of the NIA mouse 15K cDNA clone set. Nat. Genet. 28: 17-18.
-
(2001)
Nat. Genet.
, vol.28
, pp. 17-18
-
-
Kargul, G.J.1
Dudekula, D.B.2
Qian, Y.3
Lim, M.K.4
Jaradat, S.A.5
Tanaka, T.S.6
Carter, M.G.7
Ko, M.S.8
-
14
-
-
0035575440
-
Embryogenomics: Developmental biology meets genomics
-
Ko, M.S. 2001. Embryogenomics: Developmental biology meets genomics. Trends Biotechnol. 19: 511-518.
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 511-518
-
-
Ko, M.S.1
-
15
-
-
0034098476
-
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development
-
Ko, M.S., Kitchen, J.R., Wang, X., Threat, T.A., Hasegawa, A., Sun, T., Grahovac, M.J., Kargul, G.J., Lim, M.K., Cui, Y., et al. 2000. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development 127: 1737-1749.
-
(2000)
Development
, vol.127
, pp. 1737-1749
-
-
Ko, M.S.1
Kitchen, J.R.2
Wang, X.3
Threat, T.A.4
Hasegawa, A.5
Sun, T.6
Grahovac, M.J.7
Kargul, G.J.8
Lim, M.K.9
Cui, Y.10
-
16
-
-
0034597714
-
Suppression subtractive hybridization identifies genes expressed in oviduct during mouse preimplantation period
-
Lee, K.F., Kwok, K.L., and Yeung, W.S. 2000. Suppression subtractive hybridization identifies genes expressed in oviduct during mouse preimplantation period. Biochem. Biophys. Res. Common. 277: 680-685.
-
(2000)
Biochem. Biophys. Res. Common.
, vol.277
, pp. 680-685
-
-
Lee, K.F.1
Kwok, K.L.2
Yeung, W.S.3
-
17
-
-
0024225853
-
Isolation and characterization of a novel trophoblast-specific cDNA in the mouse
-
Lescisin, K.R., Varmuza, S., and Rossant, J. 1988. Isolation and characterization of a novel trophoblast-specific cDNA in the mouse. Genes & Dev. 2: 1639-1646.
-
(1988)
Genes & Dev.
, vol.2
, pp. 1639-1646
-
-
Lescisin, K.R.1
Varmuza, S.2
Rossant, J.3
-
18
-
-
0033304966
-
The placenta and the prolactin family of hormones: Regulation of the physiology of pregnancy
-
Linzer, D.I. and Fisher, S.J. 1999. The placenta and the prolactin family of hormones: Regulation of the physiology of pregnancy. Mol. Endocrinol. 13: 837-840.
-
(1999)
Mol. Endocrinol.
, vol.13
, pp. 837-840
-
-
Linzer, D.I.1
Fisher, S.J.2
-
19
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz, R.J., Fodor, S.P., Gingeras, T.R., and Lockhart, D.J. 1999. High density synthetic oligonucleotide arrays. Nat. Genet. 21: 20-24.
-
(1999)
Nat. Genet.
, vol.21
, pp. 20-24
-
-
Lipshutz, R.J.1
Fodor, S.P.2
Gingeras, T.R.3
Lockhart, D.J.4
-
20
-
-
0029845298
-
Identification by subtractive hybridization of a spectrum of novel and unexpected genes associated with in vitro differentiation of human cytotrophoblast cells
-
Morrish, D.W., Linetsky, E., Bhardwaj, D., Li, H., Dakour, J., Marsh, R.G., Paterson, M.C., and Godbout, R. 1996. Identification by subtractive hybridization of a spectrum of novel and unexpected genes associated with in vitro differentiation of human cytotrophoblast cells. Placenta 17: 431-441.
-
(1996)
Placenta
, vol.17
, pp. 431-441
-
-
Morrish, D.W.1
Linetsky, E.2
Bhardwaj, D.3
Li, H.4
Dakour, J.5
Marsh, R.G.6
Paterson, M.C.7
Godbout, R.8
-
21
-
-
0034028901
-
Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells
-
Niwa, H., Miyazaki, J., and Smith, A.G. 2000. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat. Genet. 24: 372-376.
-
(2000)
Nat. Genet.
, vol.24
, pp. 372-376
-
-
Niwa, H.1
Miyazaki, J.2
Smith, A.G.3
-
22
-
-
0028246289
-
Light-generated oligonucleotide arrays for rapid DNA sequence analysis
-
Pease, A.C., Solas, D., Sullivan, E.J., Cronin, M.T., Holmes, C.P., and Fodor, S.P. 1994. Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc. Natl. Acad. Sci. 91: 5022-5026.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 5022-5026
-
-
Pease, A.C.1
Solas, D.2
Sullivan, E.J.3
Cronin, M.T.4
Holmes, C.P.5
Fodor, S.P.6
-
23
-
-
0034595656
-
The genetic program of hematopoietic stem cells
-
Phillips, R.L., Ernst, R.E., Brunk, B., Ivanova, N., Mahan, M.A., Deanehan, J.K., Moore, K.A., Overton, G.C., and Lemischka, I.R. 2000. The genetic program of hematopoietic stem cells. Science 288: 1635-1640.
-
(2000)
Science
, vol.288
, pp. 1635-1640
-
-
Phillips, R.L.1
Ernst, R.E.2
Brunk, B.3
Ivanova, N.4
Mahan, M.A.5
Deanehan, J.K.6
Moore, K.A.7
Overton, G.C.8
Lemischka, I.R.9
-
24
-
-
0030768427
-
Molecular genetics of implantation in the mouse
-
Rinkenberger, J.L., Cross, J.C., and Werb, Z. 1997. Molecular genetics of implantation in the mouse. Dev. Genet. 21: 6-20.
-
(1997)
Dev. Genet.
, vol.21
, pp. 6-20
-
-
Rinkenberger, J.L.1
Cross, J.C.2
Werb, Z.3
-
25
-
-
0026070446
-
Specific expression of a retinoic acid-regulated, zinc-finger gene, Rex-1, in preimplantation embryos, trophoblast and spermatocytes
-
Rogers, M.B., Hosler, B.A., and Gudas, L.J. 1991. Specific expression of a retinoic acid-regulated, zinc-finger gene, Rex-1, in preimplantation embryos, trophoblast and spermatocytes. Development 113: 815-824.
-
(1991)
Development
, vol.113
, pp. 815-824
-
-
Rogers, M.B.1
Hosler, B.A.2
Gudas, L.J.3
-
26
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W., and Brown, P.O. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
27
-
-
0032538460
-
Transcription factor AP-2γ regulates murine adenosine deaminase gene expression during placental development
-
Shi, D. and Kellems, R.E. 1998. Transcription factor AP-2γ regulates murine adenosine deaminase gene expression during placental development. J. Biol. Chem. 273: 27331-27338.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 27331-27338
-
-
Shi, D.1
Kellems, R.E.2
-
28
-
-
0031020428
-
Diverse genetic regulatory motifs required for murine adenosine deaminase gene expression in the placenta
-
Shi, D., Winston, J.H., Blackburn, M.R., Datta, S.K., Hanten, G., and Kellems, R.E. 1997. Diverse genetic regulatory motifs required for murine adenosine deaminase gene expression in the placenta. J. Biol. Chem. 272: 2334-2341.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 2334-2341
-
-
Shi, D.1
Winston, J.H.2
Blackburn, M.R.3
Datta, S.K.4
Hanten, G.5
Kellems, R.E.6
-
29
-
-
0035865260
-
Experimental annotation of the human genome using microarray technology
-
Shoemaker, D.D., Schadt, E.E., Armour, C.D., He, Y.D., Garrett-Engele, P., McDonagh, P.D., Loerch, P.M., Leonardson, A., Lum, P.Y., Cavet, G., et al. 2001. Experimental annotation of the human genome using microarray technology. Nature 409: 922-927.
-
(2001)
Nature
, vol.409
, pp. 922-927
-
-
Shoemaker, D.D.1
Schadt, E.E.2
Armour, C.D.3
He, Y.D.4
Garrett-Engele, P.5
McDonagh, P.D.6
Loerch, P.M.7
Leonardson, A.8
Lum, P.Y.9
Cavet, G.10
-
30
-
-
0032846163
-
Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array
-
Singh-Gasson, S., Green, R.D., Yue, Y., Nelson, C., Blattner, F., Sussman, M.R., and Cerrina, F. 1999. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat. Biotechnol. 17: 974-978.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 974-978
-
-
Singh-Gasson, S.1
Green, R.D.2
Yue, Y.3
Nelson, C.4
Blattner, F.5
Sussman, M.R.6
Cerrina, F.7
-
31
-
-
0004249246
-
Biometry: The principles and practice of statistics in biological research
-
Freeman, New York, NY
-
Sokal, R.R. and Rohlf, F.J. 1995. Biometry: The principles and practice of statistics in biological research. Freeman, New York, NY.
-
(1995)
-
-
Sokal, R.R.1
Rohlf, F.J.2
-
32
-
-
0036171678
-
A set of 1542 mouse blastocyst and preblastocyst genes with well-matched human homologs
-
Stanton, J.L. and Green, D.P. 2002. A set of 1542 mouse blastocyst and preblastocyst genes with well-matched human homologs. Mol. Hum. Reprod. 8: 149-166.
-
(2002)
Mol. Hum. Reprod.
, vol.8
, pp. 149-166
-
-
Stanton, J.L.1
Green, D.P.2
-
33
-
-
0037085805
-
Gene expression profiling identifies significant differences between the molecular phenotypes of bone marrow-derived and circulating human CD34+ hematopoietic stem cells
-
Steidl, U., Kronenwett, R., Rohr, U.P., Fenk, R., Kliszewski, S., Maercker, C., Neubert, P., Aivado, M., Koch, J., Modlich, O., et al. 2002. Gene expression profiling identifies significant differences between the molecular phenotypes of bone marrow-derived and circulating human CD34+ hematopoietic stem cells. Blood 99: 2037-2044.
-
(2002)
Blood
, vol.99
, pp. 2037-2044
-
-
Steidl, U.1
Kronenwett, R.2
Rohr, U.P.3
Fenk, R.4
Kliszewski, S.5
Maercker, C.6
Neubert, P.7
Aivado, M.8
Koch, J.9
Modlich, O.10
-
34
-
-
12944257429
-
Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray
-
Tanaka, T.S., Jaradat, S.A., Lim, M.K., Kargul, G.J., Wang, X., Grahovac, M.J., Pantano, S., Sano, Y., Piao, Y., Nagaraja, R., et al. 2000. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Proc. Natl. Acad. Sci. 97: 9127-9132.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 9127-9132
-
-
Tanaka, T.S.1
Jaradat, S.A.2
Lim, M.K.3
Kargul, G.J.4
Wang, X.5
Grahovac, M.J.6
Pantano, S.7
Sano, Y.8
Piao, Y.9
Nagaraja, R.10
-
35
-
-
0034945086
-
From hematopoiesis to neuropoiesis: Evidence of overlapping genetic programs
-
Terskikh, A.V., Easterday, M.C., Li, L., Hood, L., Kornblum, H.I., Geschwind, D.H., and Weissman, I.L. 2001. From hematopoiesis to neuropoiesis: Evidence of overlapping genetic programs. Proc. Natl. Acad. Sci. 98: 7934-7939.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 7934-7939
-
-
Terskikh, A.V.1
Easterday, M.C.2
Li, L.3
Hood, L.4
Kornblum, H.I.5
Geschwind, D.H.6
Weissman, I.L.7
-
36
-
-
0037097591
-
Human acute stem cell leukemia with multilineage differentiation potential via cascade activation of growth factor receptors
-
Testa, U., Torelli, G.F., Riccioni, R., Muta, A.O., Militi, S., Annino, L., Mariani, G., Guarini, A., Chiaretti, S., Ritz, J., et al. 2002. Human acute stem cell leukemia with multilineage differentiation potential via cascade activation of growth factor receptors. Blood 99: 4634-4637.
-
(2002)
Blood
, vol.99
, pp. 4634-4637
-
-
Testa, U.1
Torelli, G.F.2
Riccioni, R.3
Muta, A.O.4
Militi, S.5
Annino, L.6
Mariani, G.7
Guarini, A.8
Chiaretti, S.9
Ritz, J.10
-
37
-
-
0036907106
-
Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set
-
VanBuren, V., Piao, Y., Dudekula, D.B., Qian, Y., Carter, M.G., Martin, P.R., Stagg, C.A., Bassey, U.C., Aiba, K., Hamatani, T., et al. 2002. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. Genome Res. 12(12): 1999-2003.
-
(2002)
Genome Res.
, vol.12
, Issue.12
, pp. 1999-2003
-
-
VanBuren, V.1
Piao, Y.2
Dudekula, D.B.3
Qian, Y.4
Carter, M.G.5
Martin, P.R.6
Stagg, C.A.7
Bassey, U.C.8
Aiba, K.9
Hamatani, T.10
-
38
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer, L.J., Dai, H., van de Vijver, M.J., He, Y.D., Hart, A.A., Mao, M., Peterse, H.L., van der Kooy, K., Marton, M.J., Witteveen, A.T., et al. 2002. Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
39
-
-
0032533301
-
Expression of adrenomedullin, a hypotensive peptide, in the trophoblast giant cells at the embryo implantation site in mouse
-
Yotsumoto, S., Shimada, T., Cui, C.Y., Nakashima, H., Fujiwara, H., and Ko, M.S. 1998. Expression of adrenomedullin, a hypotensive peptide, in the trophoblast giant cells at the embryo implantation site in mouse. Dev. Biol. 203: 264-275.
-
(1998)
Dev. Biol.
, vol.203
, pp. 264-275
-
-
Yotsumoto, S.1
Shimada, T.2
Cui, C.Y.3
Nakashima, H.4
Fujiwara, H.5
Ko, M.S.6
|