Preferential activation of the 8-17 deoxyribozyme by Ca2+ ions. Evidence for the identity of 8-17 with the catalytic domain of the Mg5 deoxyribozyme

Journal of Biological Chemistry

Volumn 275, Issue 16, 2000, Pages 11693-11697

  Peracchi, Alessio ^a  

^a UNIVERSITY OF PARMA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; DNA; RIBOZYME; RNA;

ARTICLE; CATALYSIS; DNA SEQUENCE; ENZYME ACTIVATION; ENZYME ACTIVITY; ENZYME SUBSTRATE; GENE MUTATION; HYDROLYSIS; PRIORITY JOURNAL; RNA CLEAVAGE;

BASE SEQUENCE; CALCIUM; CATALYTIC DOMAIN; CONSERVED SEQUENCE; DNA, SINGLE-STRANDED; ENZYME ACTIVATION; KINETICS; MAGNESIUM; MANGANESE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION;

EID: 0034697291     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.275.16.11693     Document Type: Article

References (29)

1. Breaker, R. R. (1997) Nature Biotechnol. 15, 427-431
2. Sen, D., and Geyer, C. R. (1998) Curr. Opin. Chem. Biol. 2, 680-687
3. Li, Y., and Breaker, R. R. (1999) Curr. Opin. Struct. Biol. 9, 315-323
4. Santoro, S. W., and Joyce, G. F. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 4262-4266
5. Herschlag, D. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 6921-6925
6. Santoro, S. W., and Joyce, G. F. (1998) Biochemistry 37, 13330-13342
7. Cairns, M. J., Hopkins, T. M., Witherington, C., Wang, L., and Sun, L. Q. (1999) Nature Biotechnol. 17, 480-486
8. Sun, L. Q., Cairns, M. J., Gerlach, W. L., Witherington, C., Wang, L., and King, A. (1999) J. Biol. Chem. 274, 17236-17241
9. Warashina, M., Kuwabara, T., Nakamatsu, Y., and Taira, K. (1999) Chem. Biol. 6, 237-250
10. Santiago, F. S., Lowe, H. C., Kavurma, M. M., Chesterman, C. N., Baker, A., Atkins, D. G., and Khachigian, L. M. (1999) Nature Med. 5, 1264-1269
11. Kuwabara, T., Warashina, M., Tanabe, T., Tani, K., Asano, S., and Taira, K. (1997) Nucleic Acids Res. 25, 3074-3081
12. Wu, Y., Yu, L., McMahon, R., Rossi, J. J., Forman, S. J., and Snyder, D. S. (1999) Hum. Gene Ther. 10, 2847-2857
13. Li, J., Zheng, W., Kwon, A. H., and Lu, Y. (2000) Nucleic Acids Res. 28, 481-488
14. Milligan, J. F., and Uhlenbeck, O. C. (1989) Methods Enzymol. 180, 51-62
15. Hertel, K. J., Pardi, A., Uhlenbeck, O. C., Koizumi, M., Ohtsuka, E., Uesugi, S., Cedergren, R., Eckstein, F., Gerlach, W. L., Hodgson, R., and Symons, R. H. (1992) Nucleic Acids Res. 20, 3252
16. Breaker, R. R., and Joyce, G. F. (1995) Chem. Biol. 2, 655-660
17. Dahm, S. C., and Uhlenbeck, O. C. (1991) Biochemistry 30, 9464-9469
18. Yarus, M. (1993) FASEB J. 7, 31-39
19. Kazakov, S. A. (1996) in Bioorganic Chemistry: Nucleic Acids (Hecht, S. M., ed) pp. 244-287, Oxford University Press, Oxford
20. Granot, J., Feigon, J., and Kearns, D. R. (1982) Biopolymers 21, 181-201
21. Faulhammer, D., and Famulok, M. (1996) Angew. Chem. Int. Ed. Engl. 35, 2837-2841
22. Faulhammer, D., and Famulok, M. (1997) J. Mol. Biol. 269, 188-202
23. Dahm, S. C., Derrick, W. B., and Uhlenbeck, O. C. (1993) Biochemistry 32, 13040-13045
24. Braunlin, W. H., Nordenskiold, L., and Drakenberg, T. (1991) Biopolymers 31, 1343-1346
25. Frausto da Silva, J. J. R., and Williams, R. J. P. (1991) The Biological Chemistry of the Elements, pp. 241-298, Clarendon Press, Oxford
26. Feig, A. L., Scott, W. G., and Uhlenbeck, O. C. (1998) Science 279, 81-84
27. Sugimoto, N., Okumoto, Y., and Ohmichi, T. (1999) J. Chem. Soc. Perkin Trans. II 2 1381-1386
28. Narlikar, G. J., and Herschlag, D. (1997) Annu. Rev. Biochem. 66, 19-59
29. Peracchi, A., Karpeisky, A., Maloney, L., Beigelman, L., and Herschlag, D. (1998) Biochemistry 37, 14765-14775