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Volumn 4, Issue 8, 1997, Pages 579-593

Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme

Author keywords

Catalytic DNA; DNAzyme; Metal cofactor; Ribozyme; SELEX

Indexed keywords


EID: 0031215119     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(97)90244-1     Document Type: Article
Times cited : (156)

References (61)
  • 1
    • 0020417286 scopus 로고
    • Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence
    • Kruger, K., Grabowski, P.J., Zaug, A.J., Sands, J., Gottschling, D.E. & Cech, T.R. (1982). Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence, Cell 31, 147-157.
    • (1982) Cell , vol.31 , pp. 147-157
    • Kruger, K.1    Grabowski, P.J.2    Zaug, A.J.3    Sands, J.4    Gottschling, D.E.5    Cech, T.R.6
  • 2
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada, C., Gardiner, K., Marsch, T., Pace, N. & Altman, S. (1983). The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35, 849-857.
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsch, T.3    Pace, N.4    Altman, S.5
  • 3
    • 0017232521 scopus 로고
    • Coenzymes as fossils of an earlier metabolic state
    • White, H.B. III (1976). Coenzymes as fossils of an earlier metabolic state. J. Mol. Evol. 7, 101-104.
    • (1976) J. Mol. Evol. , vol.7 , pp. 101-104
    • White III, H.B.1
  • 4
    • 36849148382 scopus 로고
    • The RNA world
    • Gilbert, W. (1986). The RNA world. Nature 319, 618.
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 6
    • 12644256371 scopus 로고    scopus 로고
    • Are engineered proteins getting competition from RNA?
    • Breaker, R.R. (1996). Are engineered proteins getting competition from RNA? Curr. Biol. 7, 422-448.
    • (1996) Curr. Biol. , vol.7 , pp. 422-448
    • Breaker, R.R.1
  • 7
    • 0026639881 scopus 로고
    • Unusual resistance of peptidyl transferase to protein extraction procedures
    • Noller, H.F., Hoffarth, V. & Zimniak, L. (1992). Unusual resistance of peptidyl transferase to protein extraction procedures. Science 256, 1416-1419.
    • (1992) Science , vol.256 , pp. 1416-1419
    • Noller, H.F.1    Hoffarth, V.2    Zimniak, L.3
  • 8
    • 0027455328 scopus 로고
    • How many catalytic RNAs? Ions and the Cheshire Cat conjecture
    • Yarus, M. (1993). How many catalytic RNAs? Ions and the Cheshire Cat conjecture. FASEB 7, 31-39.
    • (1993) FASEB , vol.7 , pp. 31-39
    • Yarus, M.1
  • 9
    • 0027183545 scopus 로고
    • Ribozymes: A distinct class of metalloenzymes
    • Pyle, A.M. (1993). Ribozymes: a distinct class of metalloenzymes. Science 261, 709-714.
    • (1993) Science , vol.261 , pp. 709-714
    • Pyle, A.M.1
  • 10
    • 0028362969 scopus 로고
    • In vitro selection of nucleic acids
    • Joyce, G.F. (1994). In vitro selection of nucleic acids. Curr. Opin. Struct. Biol. 4, 331-336.
    • (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 331-336
    • Joyce, G.F.1
  • 12
    • 0028842989 scopus 로고
    • Synthetic ribozymes and the first deoxyribozyme
    • Burgstaller, P. & Famulok, M. (1995). Synthetic ribozymes and the first deoxyribozyme. Angew. Chem. Int. Ed Engl. 34, 1189-1192.
    • (1995) Angew. Chem. Int. Ed Engl. , vol.34 , pp. 1189-1192
    • Burgstaller, P.1    Famulok, M.2
  • 13
    • 0028030688 scopus 로고
    • Expanding the scope of RNA catalysis
    • Prudent, J.R., Uno, T. & Schultz, P.G. (1994). Expanding the scope of RNA catalysis. Science 264, 1924-1927.
    • (1994) Science , vol.264 , pp. 1924-1927
    • Prudent, J.R.1    Uno, T.2    Schultz, P.G.3
  • 14
    • 0029746712 scopus 로고    scopus 로고
    • A catalytic DNA for porphyrin metallation
    • Li, Y. & Sen, D. (1996). A catalytic DNA for porphyrin metallation. Nat. Struct. Biol. 3, 743-747.
    • (1996) Nat. Struct. Biol. , vol.3 , pp. 743-747
    • Li, Y.1    Sen, D.2
  • 15
    • 0008451711 scopus 로고    scopus 로고
    • Porphyrin metallation catalyzed by a small RNA molecule
    • Conn, M.M., Prudent, J.R. & Schultz, P.G. (1996). Porphyrin metallation catalyzed by a small RNA molecule. J. Am. Chem. Soc. 118, 7012-7013.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 7012-7013
    • Conn, M.M.1    Prudent, J.R.2    Schultz, P.G.3
  • 16
    • 0028911845 scopus 로고
    • In vitro evolution of a self-alkylating ribozyme
    • Wilson, C. & Szostak, J.W. (1995). In vitro evolution of a self-alkylating ribozyme. Nature 374, 777-782.
    • (1995) Nature , vol.374 , pp. 777-782
    • Wilson, C.1    Szostak, J.W.2
  • 17
    • 0029903899 scopus 로고    scopus 로고
    • In vitro selection of a novel catalytic RNA: Characterization of a sulfur alkylation reaction and interaction with a small peptide
    • Wecker, M., Smith, D. & Gold, L. (1996). In vitro selection of a novel catalytic RNA: characterization of a sulfur alkylation reaction and interaction with a small peptide. RNA 2, 982-994.
    • (1996) RNA , vol.2 , pp. 982-994
    • Wecker, M.1    Smith, D.2    Gold, L.3
  • 18
    • 0028675028 scopus 로고
    • A DNA enzyme that cleaves RNA
    • Breaker, R.R. & Joyce, G.F. (1994). A DNA enzyme that cleaves RNA. Chem. Biol. 1, 223-229.
    • (1994) Chem. Biol. , vol.1 , pp. 223-229
    • Breaker, R.R.1    Joyce, G.F.2
  • 19
    • 0028983570 scopus 로고
    • 2+-dependent RNA phosphodiesterase activity
    • 2+-dependent RNA phosphodiesterase activity. Chem. Biol. 2, 655-660.
    • (1995) Chem. Biol. , vol.2 , pp. 655-660
    • Breaker, R.R.1    Joyce, G.F.2
  • 20
    • 0030898510 scopus 로고    scopus 로고
    • A general-purpose RNA-cleaving DNA enzyme
    • Santoro, S.W. & Joyce, G.F. (1997). A general-purpose RNA-cleaving DNA enzyme. Proc. Natl Acad. Sci. USA 94, 4262-4266.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 22
    • 0030003509 scopus 로고    scopus 로고
    • Kinetic and mechanistic analysis of nonenzymatic, template-directed oligonucleotide ligation
    • Rohatgi, R., Bartel, D.P. & Szostak, J.W. (1996). Kinetic and mechanistic analysis of nonenzymatic, template-directed oligonucleotide ligation. J. Am. Chem. Soc. 118, 3332-3339.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 3332-3339
    • Rohatgi, R.1    Bartel, D.P.2    Szostak, J.W.3
  • 23
    • 0029008042 scopus 로고
    • Use of binding energy by an RNA enzyme for catalysis by positioning and substrate destabilization
    • Narlikar, G.J., Gopalakrishnan, V., McConnell, T., Usman, N. & Herschlag, D. (1995). Use of binding energy by an RNA enzyme for catalysis by positioning and substrate destabilization. Proc. Natl Acad. Sci. USA 92, 3668-3672.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 3668-3672
    • Narlikar, G.J.1    Gopalakrishnan, V.2    McConnell, T.3    Usman, N.4    Herschlag, D.5
  • 24
    • 0028341904 scopus 로고
    • RNAs with dual specificity and dual RNAs with similar specificity
    • Connell, J.G. & Yarus, M. (1994). RNAs with dual specificity and dual RNAs with similar specificity. Science 264, 1137-1141.
    • (1994) Science , vol.264 , pp. 1137-1141
    • Connell, J.G.1    Yarus, M.2
  • 25
    • 0029799744 scopus 로고    scopus 로고
    • Bis(guanidinium) alcohols as models of Staphylococcal nuclease: Substrate binding through ion pair complexes and fast phosphoryl transfer reactions
    • Muche, M. & Gobel, M.W. (1996). Bis(guanidinium) alcohols as models of Staphylococcal nuclease: substrate binding through ion pair complexes and fast phosphoryl transfer reactions. Angew. Chem. Int. Ed. Engl. 35, 2126-2129.
    • (1996) Angew. Chem. Int. Ed. Engl. , vol.35 , pp. 2126-2129
    • Muche, M.1    Gobel, M.W.2
  • 26
    • 0025161571 scopus 로고
    • Efficient cleavage of Adenyl(3′-5′)adenosine by triethylenetetraminecobalt(III)
    • Matsumoto, Y. & Komiyama M. (1990). Efficient cleavage of Adenyl(3′-5′)adenosine by triethylenetetraminecobalt(III). J. Chem. Soc. Chem. Commun. 1050-1051.
    • (1990) J. Chem. Soc. Chem. Commun. , pp. 1050-1051
    • Matsumoto, Y.1    Komiyama, M.2
  • 28
    • 0027949817 scopus 로고
    • Value of general acid-base catalysis to ribonuclease A
    • Thompson, J.E. & Raines, R.T. (1994). Value of general acid-base catalysis to ribonuclease A. J. Am. Chem. Soc. 116, 5467-5468.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 5467-5468
    • Thompson, J.E.1    Raines, R.T.2
  • 29
    • 0023707963 scopus 로고
    • Elimination of adventitous metals
    • (Riordan, J.F. & Vallee, B.L., eds), Academic Press, San Diego, USA
    • Holmquist, B. (1988). Elimination of adventitous metals. In Methods Enzymol. (Riordan, J.F. & Vallee, B.L., eds), pp. 6-12, Academic Press, San Diego, USA.
    • (1988) Methods Enzymol. , pp. 6-12
    • Holmquist, B.1
  • 30
    • 85012420500 scopus 로고
    • Inductively coupled plasma-optical emission spectroscopy
    • Fassel, V.A. & Kniesley, R.N. (1974). Inductively coupled plasma-optical emission spectroscopy. Anal. Chem. 46, 1110A-1120A.
    • (1974) Anal. Chem. , vol.46
    • Fassel, V.A.1    Kniesley, R.N.2
  • 31
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott, W.G., Finch, J.T. & Klug, A. (1995). The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81, 991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.G.1    Finch, J.T.2    Klug, A.3
  • 32
    • 0028807644 scopus 로고
    • The roles of the conserved pyrimidine bases in hammerhead ribozyme catalysis: Evidence for a magnesium ion-binding site
    • Murray, J.B., Adams, C.J., Arnold, J.R.P. & Stockley, P.G. (1995). The roles of the conserved pyrimidine bases in hammerhead ribozyme catalysis: evidence for a magnesium ion-binding site. Biochem. J. 311, 487-494.
    • (1995) Biochem. J. , vol.311 , pp. 487-494
    • Murray, J.B.1    Adams, C.J.2    Arnold, J.R.P.3    Stockley, P.G.4
  • 33
    • 0025762699 scopus 로고
    • Relationship between 2′ hydroxyls and magnesium binding in the hammerhead domain: A model for ribozyme catalysis
    • Perreault, J.-P., Labuda, D., Usman, N., Yang, J.-H. & Cedergren, R. (1990). Relationship between 2′ hydroxyls and magnesium binding in the hammerhead domain: a model for ribozyme catalysis. Biochemistry 30, 4020-4025.
    • (1990) Biochemistry , vol.30 , pp. 4020-4025
    • Perreault, J.-P.1    Labuda, D.2    Usman, N.3    Yang, J.-H.4    Cedergren, R.5
  • 34
    • 0025821094 scopus 로고
    • Effects of phosphorothioate and 2-amino groups in hammerhead ribozyme catalysis
    • Koizumi, M. & Ohtsuka, E. (1991). Effects of phosphorothioate and 2-amino groups in hammerhead ribozyme catalysis. Biochemistry 30, 5145-5150.
    • (1991) Biochemistry , vol.30 , pp. 5145-5150
    • Koizumi, M.1    Ohtsuka, E.2
  • 35
    • 0027432918 scopus 로고
    • The synthesis of oligoribonucleotides containing O6-methylguanine: The role of conserved guanosine residues in hammerhead ribozyme cleavage
    • Grasby, J.A., Butler, P.J.G. & Gait, M.J. (1993). The synthesis of oligoribonucleotides containing O6-methylguanine: the role of conserved guanosine residues in hammerhead ribozyme cleavage. Nucleic Acids Res. 21, 4444-4450.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4444-4450
    • Grasby, J.A.1    Butler, P.J.G.2    Gait, M.J.3
  • 36
    • 0029902343 scopus 로고    scopus 로고
    • Small RNA-divalent domains
    • Ciesiolka, J. & Yarus, M. (1996). Small RNA-divalent domains. RNA 2, 785-793.
    • (1996) RNA , vol.2 , pp. 785-793
    • Ciesiolka, J.1    Yarus, M.2
  • 39
    • 0016255781 scopus 로고
    • Interaction of manganese with fragments, complementary fragment recombinations, and whole molecules of yeast phenylalanine specific transfer RNA
    • Schrier, A.A. & Schimmel, P.R. (1974). Interaction of manganese with fragments, complementary fragment recombinations, and whole molecules of yeast phenylalanine specific transfer RNA. J. Mol. Biol. 86, 601-620.
    • (1974) J. Mol. Biol. , vol.86 , pp. 601-620
    • Schrier, A.A.1    Schimmel, P.R.2
  • 40
    • 0027732494 scopus 로고
    • Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism
    • Dahm, S.C., Derrick, W.B. & Uhlenbeck, O.C. (1993). Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism. Biochemistry 32, 13040-13045.
    • (1993) Biochemistry , vol.32 , pp. 13040-13045
    • Dahm, S.C.1    Derrick, W.B.2    Uhlenbeck, O.C.3
  • 42
    • 0027416218 scopus 로고
    • Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA
    • Collins, R.A. & Olive, J.E. (1993). Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA. Biochemistry 32, 2795-2799.
    • (1993) Biochemistry , vol.32 , pp. 2795-2799
    • Collins, R.A.1    Olive, J.E.2
  • 43
    • 0025036189 scopus 로고
    • RNA Conformational requirements of self-cleavage of hepatitis delta virus RNA
    • Wu, H.-N. & Lai, M.M. (1990). RNA Conformational requirements of self-cleavage of hepatitis delta virus RNA. Mol. Cell. Biol. 10, 5575-5579.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 5575-5579
    • Wu, H.-N.1    Lai, M.M.2
  • 44
    • 0025998488 scopus 로고
    • Role of divalent metal ions in the hammerhead RNA cleavage reaction
    • Dahm, S.C. & Uhlenbeck, O.C. (1991 ). Role of divalent metal ions in the hammerhead RNA cleavage reaction. Biochemistry 30, 9464-9469.
    • (1991) Biochemistry , vol.30 , pp. 9464-9469
    • Dahm, S.C.1    Uhlenbeck, O.C.2
  • 45
    • 0027473887 scopus 로고
    • Ionic requirements for RNA binding, cleavage and ligation by the hairpin ribozyme
    • Chowrira, B.M., Herranz-Berzal, A. & Burke, J.M. (1993). Ionic requirements for RNA binding, cleavage and ligation by the hairpin ribozyme. Biochemistry 32, 1088-1095.
    • (1993) Biochemistry , vol.32 , pp. 1088-1095
    • Chowrira, B.M.1    Herranz-Berzal, A.2    Burke, J.M.3
  • 46
    • 0022433369 scopus 로고
    • Crystallographic and Biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA
    • Brown, R.S., Dewan, J.C. & Klug, A. (1985). Crystallographic and Biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry 24, 4785-4801.
    • (1985) Biochemistry , vol.24 , pp. 4785-4801
    • Brown, R.S.1    Dewan, J.C.2    Klug, A.3
  • 47
    • 0023747377 scopus 로고
    • Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage
    • Sharmeen, L., Kuo, M.Y.-P., Dinter-Gottlieb, G. & Taylor, J. (1988). Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage. J. Virol. 62, 2674-2679.
    • (1988) J. Virol. , vol.62 , pp. 2674-2679
    • Sharmeen, L.1    Kuo, M.Y.-P.2    Dinter-Gottlieb, G.3    Taylor, J.4
  • 48
    • 0022504693 scopus 로고
    • Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA
    • Buzayan, J.M., Gerlach, W.L. & Bruening, G. (1986). Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA. Nature 323, 349-355.
    • (1986) Nature , vol.323 , pp. 349-355
    • Buzayan, J.M.1    Gerlach, W.L.2    Bruening, G.3
  • 49
    • 0028657559 scopus 로고
    • Suppression of mutations in the core of the Tetrahymena ribozyme by spermine, ethanol and by substrate stabilization
    • Hanna, M. & Szostak, J.W. (1994). Suppression of mutations in the core of the Tetrahymena ribozyme by spermine, ethanol and by substrate stabilization. Nucleic Acids Res. 22, 5326-5331.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5326-5331
    • Hanna, M.1    Szostak, J.W.2
  • 50
    • 0021870425 scopus 로고
    • Ion dependence of the Bacillus subtilis RNase P reaction
    • Gardiner, K.J., Marsh, T.L. & Pace, N.R. (1985). Ion dependence of the Bacillus subtilis RNase P reaction. J. biol. Chem. 260, 5415-5419.
    • (1985) J. Biol. Chem. , vol.260 , pp. 5415-5419
    • Gardiner, K.J.1    Marsh, T.L.2    Pace, N.R.3
  • 53
    • 0017361887 scopus 로고
    • A Crystallographic study of metal-binding to yeast phenylalanine transfer RNA
    • Jack, A., Ladner, J.E., Rhodes, D., Brown, R.S. & Klug, A. (1977). A Crystallographic study of metal-binding to yeast phenylalanine transfer RNA. J. Mol. Biol. 111, 315-328.
    • (1977) J. Mol. Biol. , vol.111 , pp. 315-328
    • Jack, A.1    Ladner, J.E.2    Rhodes, D.3    Brown, R.S.4    Klug, A.5
  • 54
    • 0001113973 scopus 로고    scopus 로고
    • (Hecht, S., ed.), Oxford University Press, Oxford, UK
    • Kazakov, S.A. (1996). Bioorganic Chemistry: Nucleic Acids (Hecht, S., ed.), pp. 244-287, Oxford University Press, Oxford, UK.
    • (1996) Bioorganic Chemistry: Nucleic Acids , pp. 244-287
    • Kazakov, S.A.1
  • 56
    • 0026666130 scopus 로고
    • A trinucleotide can promote metal ion-independent specific cleavage of RNA
    • Kazakov, S. & Altman, S. (1992). A trinucleotide can promote metal ion-independent specific cleavage of RNA. Proc. Natl Acad. Sci. USA 89, 7939-7943.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 7939-7943
    • Kazakov, S.1    Altman, S.2
  • 57
    • 0021770258 scopus 로고
    • Self cleavage of a precursor RNA from bacteriophage T4
    • Watson, N., Gurevitz, M., Ford, J. & Apirion, D. (1984). Self cleavage of a precursor RNA from bacteriophage T4. J. Mol. Biol. 172, 301 - 323.
    • (1984) J. Mol. Biol. , vol.172 , pp. 301-323
    • Watson, N.1    Gurevitz, M.2    Ford, J.3    Apirion, D.4
  • 58
    • 12644304590 scopus 로고
    • Non-enzymatic hydrolysis of RNA
    • Kierzek, R. (1992). Non-enzymatic hydrolysis of RNA. Nucleic Acids Res. 20, 507-509.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 507-509
    • Kierzek, R.1
  • 59
    • 0000917638 scopus 로고    scopus 로고
    • In vitro selection of catalytic polynucleotides
    • Breaker, R.R. (1997). In vitro selection of catalytic polynucleotides. Chem. Revs 95, 371-390.
    • (1997) Chem. Revs , vol.95 , pp. 371-390
    • Breaker, R.R.1


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