-
1
-
-
0037008841
-
Phylogenetic analysis shows that the oxa β-lactamase genes have been on plasmids for millions of years
-
Barlow, M., and B. G. Hall. 2002. Phylogenetic analysis shows that the oxa β-lactamase genes have been on plasmids for millions of years. J. Mol. Evol. 55:314-321.
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 314-321
-
-
Barlow, M.1
Hall, B.G.2
-
2
-
-
0030823001
-
Exceptional convergent evolution in a virus
-
Bull, J. J., M. R. Badgett, H. A. Wichman, J. P. Huelsenbeck, D. M. Hillis, A. Gulati, C. Ho, and I. J. Molineux. 1997. Exceptional convergent evolution in a virus. Genetics 147:1497-1507.
-
(1997)
Genetics
, vol.147
, pp. 1497-1507
-
-
Bull, J.J.1
Badgett, M.R.2
Wichman, H.A.3
Huelsenbeck, J.P.4
Hillis, D.M.5
Gulati, A.6
Ho, C.7
Molineux, I.J.8
-
3
-
-
0019858614
-
Similar amino acid sequences: Chance or common ancestry?
-
Doolittle, R. F. 1981. Similar amino acid sequences: chance or common ancestry? Science 214:149-159.
-
(1981)
Science
, vol.214
, pp. 149-159
-
-
Doolittle, R.F.1
-
4
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
5
-
-
0022438882
-
Mechanisms of spontaneous mutagenesis: Clues from altered mutational specificity in DNA repair-defective strains
-
D. M. Shankel, P. E. Hartman, T. Kada, and A. Hollender, eds. Plenum Press, New York
-
Glickman, B. W., P. A. Burns, and D. F. Fix. 1986. Mechanisms of spontaneous mutagenesis: clues from altered mutational specificity in DNA repair-defective strains. Pp. 259-281 in D. M. Shankel, P. E. Hartman, T. Kada, and A. Hollender, eds. Antimutagenesis and anticarcinogenesis mechanisms. Plenum Press, New York.
-
(1986)
Antimutagenesis and Anticarcinogenesis Mechanisms
, pp. 259-281
-
-
Glickman, B.W.1
Burns, P.A.2
Fix, D.F.3
-
6
-
-
0033061057
-
The spectra of spontaneous growth-dependent and adaptive mutations in ebgR
-
Hall, B. G. 1999. The spectra of spontaneous growth-dependent and adaptive mutations in ebgR. J. Bacteriol. 181:1149-1155.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1149-1155
-
-
Hall, B.G.1
-
7
-
-
14544307740
-
-
Macintosh, Windows, Unix Distributed by the author., Bellingham, WA
-
Hall, B. G. 2004a. CodonAlign. Macintosh, Windows, Unix Distributed by the author., Bellingham, WA.
-
(2004)
CodonAlign
-
-
Hall, B.G.1
-
9
-
-
14544276944
-
-
Macintosh Distributed by the author, Bellingham, WA
-
Hall, B. G. 2004c. TuneClustalX. Macintosh Distributed by the author, Bellingham, WA.
-
(2004)
TuneClustalX
-
-
Hall, B.G.1
-
10
-
-
14544302073
-
-
Macintosh Distributed by the author, Bellingham, WA
-
Hall, B. G. 2004d. CompareTrees. Macintosh Distributed by the author, Bellingham, WA.
-
(2004)
CompareTrees
-
-
Hall, B.G.1
-
11
-
-
14544288963
-
-
Macintosh Distributed by the author, Bellingham, WA
-
Hall, B. G. 2004e. EvolveAGene. Macintosh Distributed by the author, Bellingham, WA.
-
(2004)
EvolveAGene
-
-
Hall, B.G.1
-
12
-
-
2942562249
-
Evolution of the serine β-lactamases: Past, present and future
-
Hall, B. G., and M. Barlow. 2004. Evolution of the serine β-lactamases: past, present and future. Drug Resist. Update 7:111-123.
-
(2004)
Drug Resist. Update
, vol.7
, pp. 111-123
-
-
Hall, B.G.1
Barlow, M.2
-
13
-
-
3042808576
-
Independent origins of the Subgroup (B1+B2) and the Subgroup B3 metallo-β-lactamases
-
Hall, B. G., S. J. Salipante, and M. Barlow. 2004. Independent origins of the Subgroup (B1+B2) and the Subgroup B3 metallo-β-lactamases. J. Mol. Evol. 59:132-140.
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 132-140
-
-
Hall, B.G.1
Salipante, S.J.2
Barlow, M.3
-
14
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
15
-
-
0026534986
-
Experimental phylogenetics: Generation of a known phytogeny
-
Hillis, D. M., J. J. Bull, M. E. White, M. R. Badgett, and I. J. Molineux. 1992. Experimental phylogenetics: generation of a known phytogeny. Science 255:589-592.
-
(1992)
Science
, vol.255
, pp. 589-592
-
-
Hillis, D.M.1
Bull, J.J.2
White, M.E.3
Badgett, M.R.4
Molineux, I.J.5
-
16
-
-
0028362880
-
Application and accuracy of molecular phytogenies
-
Hillis, D. M., J. P. Huelsenbeck, and C. W. Cunningham. 1994. Application and accuracy of molecular phytogenies. Science 264:671-677.
-
(1994)
Science
, vol.264
, pp. 671-677
-
-
Hillis, D.M.1
Huelsenbeck, J.P.2
Cunningham, C.W.3
-
17
-
-
0034849408
-
MrBayes: Bayesian inference of phytogeny
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phytogeny. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
18
-
-
0000732090
-
Evolution of protein molecules
-
H. N. Munro, ed. Academic Press, New York
-
Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pp. 21-32 in H. N. Munro, ed. Mammalian protein metabolism. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-32
-
-
Jukes, T.H.1
Cantor, C.R.2
-
19
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
20
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner, M. K., and J. Felsenstein. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-468.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
21
-
-
0003421005
-
-
Sinauer Associates, Sunderland, Mass.
-
Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, Mass.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
23
-
-
0000329594
-
Relative efficiencies of the Fitch-Margoliash, maximum parsimony, maximum-likelihood, minimum-evolution, and Neighbor-Joining methods of phylogenetic tree construction in obtaining the correct tree
-
Saitou, N., and T. Imanishi. 1989. Relative efficiencies of the Fitch-Margoliash, maximum parsimony, maximum-likelihood, minimum-evolution, and Neighbor-Joining methods of phylogenetic tree construction in obtaining the correct tree. Mol. Biol. Evol. 6:514-525.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 514-525
-
-
Saitou, N.1
Imanishi, T.2
-
24
-
-
0022446219
-
Mechanisms of spontaneous mutagenesis: An analysis of the spectrum of spontaneous mutation in the Escherichia coli lacI gene
-
Schaaper, R. M., B. N. Danforth, and B. W. Glickman. 1986. Mechanisms of spontaneous mutagenesis: an analysis of the spectrum of spontaneous mutation in the Escherichia coli lacI gene. J. Mol. Biol. 189:273-284.
-
(1986)
J. Mol. Biol.
, vol.189
, pp. 273-284
-
-
Schaaper, R.M.1
Danforth, B.N.2
Glickman, B.W.3
-
25
-
-
0025953766
-
Spontaneous mutations in the Escherichia coli lacI gene
-
Schaaper, R. M., and R. L. Dunn. 1991. Spontaneous mutations in the Escherichia coli lacI gene. Genetics 129:317-326.
-
(1991)
Genetics
, vol.129
, pp. 317-326
-
-
Schaaper, R.M.1
Dunn, R.L.2
-
26
-
-
0031857684
-
ROSE: Generating sequence families
-
Stoye, J., D. Evers, and F. Meyer. 1998. ROSE: generating sequence families. Bioinformatics 14:157-163.
-
(1998)
Bioinformatics
, vol.14
, pp. 157-163
-
-
Stoye, J.1
Evers, D.2
Meyer, F.3
-
28
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
29
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
Thompson, J. D., F. Plewniak, and O. Poch. 1999. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27:2682-2690.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2682-2690
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
30
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
31
-
-
0034097381
-
Cbdon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang, Z., R. Nielsen, N. Goldman, and A. M. Pedersen. 2000. Cbdon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
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