-
1
-
-
0033302071
-
An evolutionary classification of the metallo-β-lactamase fold proteins
-
Aravind, L. (1999) An evolutionary classification of the metallo-β-lactamase fold proteins. In Silico Biol. 1, 69-91.
-
(1999)
In Silico Biol
, vol.1
, pp. 69-91
-
-
Aravind, L.1
-
2
-
-
0035839131
-
Expansion of the zinc metallo-hydrolase family of the βmase fold
-
Daiyasu, H., Osaka, K., Ishino, Y., and Toh, H. (2001) Expansion of the zinc metallo-hydrolase family of the βmase fold. FEBS Lett. 503, 1-6.
-
(2001)
FEBS Lett
, vol.503
, pp. 1-6
-
-
Daiyasu, H.1
Osaka, K.2
Ishino, Y.3
Toh, H.4
-
3
-
-
33750624074
-
Metallo-β- lactamases: Novel weaponry for antibiotic resistance in bacteria
-
Crowder, M. W., Spencer, J., and Vila, A. J. (2006) Metallo-β- lactamases: Novel weaponry for antibiotic resistance in bacteria. Acc. Chem. Res. 39, 721-728.
-
(2006)
Acc. Chem. Res
, vol.39
, pp. 721-728
-
-
Crowder, M.W.1
Spencer, J.2
Vila, A.J.3
-
4
-
-
0033200323
-
Crystal structure of human glyoxalase II and its complex with a glutathione thiolester substrate analogue
-
Cameron, A. D., Ridderstrom, M., Olin, B., and Mannervik, B. (1999) Crystal structure of human glyoxalase II and its complex with a glutathione thiolester substrate analogue. Struct. Folding Des. 7, 1067-1078.
-
(1999)
Struct. Folding Des
, vol.7
, pp. 1067-1078
-
-
Cameron, A.D.1
Ridderstrom, M.2
Olin, B.3
Mannervik, B.4
-
5
-
-
33646732453
-
The crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa, defines a third class of sulfatases
-
Hagelueken, G., Adams, T. M., Wiehlmann, L., Widow, U., Kolmar, H., Tummler, B., Heinz, D. W., and Schubert, W. D. (2006) The crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa, defines a third class of sulfatases. Proc. Natl. Acad. Sci. U.S.A. 103, 7631-7636.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 7631-7636
-
-
Hagelueken, G.1
Adams, T.M.2
Wiehlmann, L.3
Widow, U.4
Kolmar, H.5
Tummler, B.6
Heinz, D.W.7
Schubert, W.D.8
-
6
-
-
26844434108
-
Antibiotic recognition by binuclear metallo-β- lactamases revealed by X-ray crystallography
-
Spencer, J., Read, J., Sessions, R. B., Howell, S., Blackburn, G. M., and Gamblin, S. J. (2005) Antibiotic recognition by binuclear metallo-β- lactamases revealed by X-ray crystallography. J. Am. Chem. Soc. 127, 14439-14444.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 14439-14444
-
-
Spencer, J.1
Read, J.2
Sessions, R.B.3
Howell, S.4
Blackburn, G.M.5
Gamblin, S.J.6
-
7
-
-
10044225894
-
A metallo-β-lactamase enzyme in action: Crystal structures of the monozinc carbapenemase CphA and its complex with biapenem
-
Garau, G., Bebrone, C., Anne, C., Galleni, M., Frere, J. M., and Dideberg, O. (2005) A metallo-β-lactamase enzyme in action: Crystal structures of the monozinc carbapenemase CphA and its complex with biapenem. J. Mol. Biol. 345, 785-795.
-
(2005)
J. Mol. Biol
, vol.345
, pp. 785-795
-
-
Garau, G.1
Bebrone, C.2
Anne, C.3
Galleni, M.4
Frere, J.M.5
Dideberg, O.6
-
8
-
-
23344445580
-
Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein e from Streptococcus pneumoniae: New structural features among the metallo-β-lactamase superfamily
-
Garau, G., Lemaire, D., Vernet, T., Dideberg, O., and Di Guilmi, A. M. (2005) Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein e from Streptococcus pneumoniae: New structural features among the metallo-β-lactamase superfamily. J. Biol. Chem. 280, 28591-28600.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 28591-28600
-
-
Garau, G.1
Lemaire, D.2
Vernet, T.3
Dideberg, O.4
Di Guilmi, A.M.5
-
9
-
-
37849007277
-
Catalysis and Structural Properties of Leishmania infantum Glyoxalase II: Trypanothione Specificity and Phytogeny
-
Silva, M. S., Barata, L., Ferreira, A. E., Romao, S., Tomas, A. M., Freire, A. P., and Cordeiro, C. (2008) Catalysis and Structural Properties of Leishmania infantum Glyoxalase II: Trypanothione Specificity and Phytogeny. Biochemistry 47, 195-204.
-
(2008)
Biochemistry
, vol.47
, pp. 195-204
-
-
Silva, M.S.1
Barata, L.2
Ferreira, A.E.3
Romao, S.4
Tomas, A.M.5
Freire, A.P.6
Cordeiro, C.7
-
10
-
-
29144497867
-
The molecular structure and catalytic mechanism of a quorum-quenching N-acyl-L- homoserine lactone hydrolase
-
Kim, M. H., Choi, W. C., Kang, H. O., Lee, J. S., Kang, B. S., Kim, K. J., Derewenda, Z. S., Oh, T. K., Lee, C. H., and Lee, J. K. (2005) The molecular structure and catalytic mechanism of a quorum-quenching N-acyl-L- homoserine lactone hydrolase. Proc. Natl. Acad. Sci. U.S.A. 102, 17606-17611.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 17606-17611
-
-
Kim, M.H.1
Choi, W.C.2
Kang, H.O.3
Lee, J.S.4
Kang, B.S.5
Kim, K.J.6
Derewenda, Z.S.7
Oh, T.K.8
Lee, C.H.9
Lee, J.K.10
-
11
-
-
47649125426
-
Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 2. Substrate Modeling and Active Site Mutations
-
Momb, J., Wang, C., Liu, D., Thomas, P. W., Petsko, G. A., Guo, H., Ringe, D., and Fast, W. (2008) Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 2. Substrate Modeling and Active Site Mutations. Biochemistry 47, 7715-7725.
-
(2008)
Biochemistry
, vol.47
, pp. 7715-7725
-
-
Momb, J.1
Wang, C.2
Liu, D.3
Thomas, P.W.4
Petsko, G.A.5
Guo, H.6
Ringe, D.7
Fast, W.8
-
12
-
-
18844433603
-
The quorum-quenching lactonase from Bacillus thuringiensis is a metalloprotein
-
Thomas, P. W., Stone, E. M., Costello, A. L., Tierney, D. L., and Fast, W. (2005) The quorum-quenching lactonase from Bacillus thuringiensis is a metalloprotein. Biochemistry 44, 7559-7569.
-
(2005)
Biochemistry
, vol.44
, pp. 7559-7569
-
-
Thomas, P.W.1
Stone, E.M.2
Costello, A.L.3
Tierney, D.L.4
Fast, W.5
-
13
-
-
33750695657
-
The quorum-quenching metallo-γ-lactonase from Bacillus thuringiensis exhibits a leaving group thio effect
-
Momb, J., Thomas, P. W., Breece, R. M., Tierney, D. L., and Fast, W. (2006) The quorum-quenching metallo-γ-lactonase from Bacillus thuringiensis exhibits a leaving group thio effect. Biochemistry 45, 13385-13393.
-
(2006)
Biochemistry
, vol.45
, pp. 13385-13393
-
-
Momb, J.1
Thomas, P.W.2
Breece, R.M.3
Tierney, D.L.4
Fast, W.5
-
14
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
15
-
-
23844552796
-
Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis
-
Liu, D., Lepore, B. W., Petsko, G. A., Thomas, P. W., Stone, E. M., Fast, W., and Ringe, D. (2005) Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis. Proc. Natl. Acad. Sci. U.S.A. 102, 11882-11887.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 11882-11887
-
-
Liu, D.1
Lepore, B.W.2
Petsko, G.A.3
Thomas, P.W.4
Stone, E.M.5
Fast, W.6
Ringe, D.7
-
16
-
-
3042613550
-
Likelihood-enhanced fast rotation functions
-
Storoni, L. C., McCoy, A. J., and Read, R. J. (2004) Likelihood-enhanced fast rotation functions. Acta Crystallogr. D60, 432-438.
-
(2004)
Acta Crystallogr
, vol.D60
, pp. 432-438
-
-
Storoni, L.C.1
McCoy, A.J.2
Read, R.J.3
-
17
-
-
47649103098
-
-
Collaborative Computational Project, Numer 4 (1994) Acta Crystallogr. D50, 760-763.
-
Collaborative Computational Project, Numer 4 (1994) Acta Crystallogr. D50, 760-763.
-
-
-
-
18
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D53, 240-255.
-
(1997)
Acta Crystallogr
, vol.D53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
19
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P., and Cowtan, K. (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr. D60, 2126-2132.
-
(2004)
Acta Crystallogr
, vol.D60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
20
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G. M. (2008) A short history of SHELX. Acta Crystallogr. A64, 112-122.
-
(2008)
Acta Crystallogr
, vol.A64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
21
-
-
4444221565
-
UCSF Chimera: A visualization system for exploratory research and analysis
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera: A visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
22
-
-
0030498233
-
xdlMAPMAN and xdlDATAMAN: Programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets
-
Kleywegt, G. J., and Jones, T. A. (1996) xdlMAPMAN and xdlDATAMAN: Programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets. Acta Crystallogr. D52, 826-828.
-
(1996)
Acta Crystallogr
, vol.D52
, pp. 826-828
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
23
-
-
35448969842
-
Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens
-
Liu, D., Thomas, P. W., Momb, J., Hoang, Q. Q., Petsko, G. A., Ringe, D., and Fast, W. (2007) Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens. Biochemistry 46, 11789-11799.
-
(2007)
Biochemistry
, vol.46
, pp. 11789-11799
-
-
Liu, D.1
Thomas, P.W.2
Momb, J.3
Hoang, Q.Q.4
Petsko, G.A.5
Ringe, D.6
Fast, W.7
-
24
-
-
0033179802
-
The geometry of metal-ligand interactions relevant to proteins
-
Harding, M. M. (1999) The geometry of metal-ligand interactions relevant to proteins. Acta Crystallogr. D55, 1432-1443.
-
(1999)
Acta Crystallogr
, vol.D55
, pp. 1432-1443
-
-
Harding, M.M.1
-
25
-
-
1842791546
-
Specificity and enzyme kinetics of the quorum-quenching N-acyl homoserine lactone lactonase (AHL-lactonase)
-
Wang, L. H., Weng, L. X., Dong, Y. H., and Zhang, L. H. (2004) Specificity and enzyme kinetics of the quorum-quenching N-acyl homoserine lactone lactonase (AHL-lactonase). J. Biol. Chem. 279, 13645-13651.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 13645-13651
-
-
Wang, L.H.1
Weng, L.X.2
Dong, Y.H.3
Zhang, L.H.4
-
26
-
-
0033517787
-
NMR characterization of the metallo-β-lactamase from Bacteroides fragilis and its interaction with a tight-binding inhibitor: Role of an active-site loop
-
Scrofani, S. D., Chung, J., Huntley, J. J., Benkovic, S. J., Wright, P. E., and Dyson, H. J. (1999) NMR characterization of the metallo-β-lactamase from Bacteroides fragilis and its interaction with a tight-binding inhibitor: Role of an active-site loop. Biochemistry 38, 14507-14514.
-
(1999)
Biochemistry
, vol.38
, pp. 14507-14514
-
-
Scrofani, S.D.1
Chung, J.2
Huntley, J.J.3
Benkovic, S.J.4
Wright, P.E.5
Dyson, H.J.6
-
27
-
-
0038648570
-
Role of a solvent-exposed tryptophan in the recognition and binding of antibiotic substrates for a metallo-β-lactamase
-
Huntley, J. J., Fast, W., Benkovic, S. J., Wright, P. E., and Dyson, H. J. (2003) Role of a solvent-exposed tryptophan in the recognition and binding of antibiotic substrates for a metallo-β-lactamase. Protein Sci. 12, 1368-1375.
-
(2003)
Protein Sci
, vol.12
, pp. 1368-1375
-
-
Huntley, J.J.1
Fast, W.2
Benkovic, S.J.3
Wright, P.E.4
Dyson, H.J.5
-
28
-
-
0034619511
-
Dynamics of the metallo-β-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor
-
Huntley, J. J., Scrofani, S. D., Osborne, M. J., Wright, P. E., and Dyson, H. J. (2000) Dynamics of the metallo-β-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor. Biochemistry 39, 13356-13364.
-
(2000)
Biochemistry
, vol.39
, pp. 13356-13364
-
-
Huntley, J.J.1
Scrofani, S.D.2
Osborne, M.J.3
Wright, P.E.4
Dyson, H.J.5
-
29
-
-
4544346596
-
Probing the dynamics of a mobile loop above the active site of L1, a metallo-β- lactamase from Stenotrophomonas maltophilia, via site-directed mutagenesis and stopped-flow fluorescence spectroscopy
-
Garrity, J. D., Pauff, J. M., and Crowder, M. W. (2004) Probing the dynamics of a mobile loop above the active site of L1, a metallo-β- lactamase from Stenotrophomonas maltophilia, via site-directed mutagenesis and stopped-flow fluorescence spectroscopy. J. Biol. Chem. 279, 39663-39670.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 39663-39670
-
-
Garrity, J.D.1
Pauff, J.M.2
Crowder, M.W.3
-
30
-
-
0037462925
-
Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-β-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril
-
Garcia-Saez, I., Mercuri, P. S., Papamicael, C., Kahn, R., Frere, J. M., Galleni, M., Rossolini, G. M., and Dideberg, O. (2003) Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-β-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril. J. Mol. Biol. 325, 651-660.
-
(2003)
J. Mol. Biol
, vol.325
, pp. 651-660
-
-
Garcia-Saez, I.1
Mercuri, P.S.2
Papamicael, C.3
Kahn, R.4
Frere, J.M.5
Galleni, M.6
Rossolini, G.M.7
Dideberg, O.8
-
31
-
-
0034681922
-
Crystal structure of the IMP-1 metallo β-lactamase from Pseudomonas aeruginosa and its complex with a mercaptocarboxylate inhibitor: Binding determinants of a potent, broad-spectrum inhibitor
-
Concha, N. O., Janson, C. A., Rowling, P., Pearson, S., Cheever, C. A., Clarke, B. P., Lewis, C., Galleni, M., Frere, J. M., Payne, D. J., Bateson, J. H., and Abdel-Meguid, S. S. (2000) Crystal structure of the IMP-1 metallo β-lactamase from Pseudomonas aeruginosa and its complex with a mercaptocarboxylate inhibitor: Binding determinants of a potent, broad-spectrum inhibitor. Biochemistry 39, 4288-4298.
-
(2000)
Biochemistry
, vol.39
, pp. 4288-4298
-
-
Concha, N.O.1
Janson, C.A.2
Rowling, P.3
Pearson, S.4
Cheever, C.A.5
Clarke, B.P.6
Lewis, C.7
Galleni, M.8
Frere, J.M.9
Payne, D.J.10
Bateson, J.H.11
Abdel-Meguid, S.S.12
-
32
-
-
21244446747
-
Irreversible inhibition of metallo-β-lactamase (IMP-1) by 3-(3- mercaptopropionylsulfanyl)propionic acid pentafluorophenyl ester
-
Kurosaki, H., Yamaguchi, Y., Higashi, T., Soga, K., Matsueda, S., Yumoto, H., Misumi, S., Yamagata, Y., Arakawa, Y., and Goto, M. (2005) Irreversible inhibition of metallo-β-lactamase (IMP-1) by 3-(3- mercaptopropionylsulfanyl)propionic acid pentafluorophenyl ester. Angew. Chem., Int. Ed. 44, 3861-3864.
-
(2005)
Angew. Chem., Int. Ed
, vol.44
, pp. 3861-3864
-
-
Kurosaki, H.1
Yamaguchi, Y.2
Higashi, T.3
Soga, K.4
Matsueda, S.5
Yumoto, H.6
Misumi, S.7
Yamagata, Y.8
Arakawa, Y.9
Goto, M.10
-
33
-
-
33749030701
-
Probing, inhibition, and crystallographic characterization of metallo-β-lactamase (IMP-1) with fluorescent agents containing dansyl and thiol groups
-
Kurosaki, H., Yamaguchi, Y., Yasuzawa, H., Jin, W., Yamagata, Y., and Arakawa, Y. (2006) Probing, inhibition, and crystallographic characterization of metallo-β-lactamase (IMP-1) with fluorescent agents containing dansyl and thiol groups. ChemMedChem 1, 969-972.
-
(2006)
ChemMedChem 1
, pp. 969-972
-
-
Kurosaki, H.1
Yamaguchi, Y.2
Yasuzawa, H.3
Jin, W.4
Yamagata, Y.5
Arakawa, Y.6
-
34
-
-
36448989329
-
Structural insights into the design of inhibitors for the L1 metallo-β-lactamase from Stenotrophomonas maltophilia
-
Nauton, L., Kahn, R., Garau, G., Hernandez, J. F., and Dideberg, O. (2008) Structural insights into the design of inhibitors for the L1 metallo-β-lactamase from Stenotrophomonas maltophilia. J. Mol Biol. 375, 257-269.
-
(2008)
J. Mol Biol
, vol.375
, pp. 257-269
-
-
Nauton, L.1
Kahn, R.2
Garau, G.3
Hernandez, J.F.4
Dideberg, O.5
-
35
-
-
33749019440
-
Identification of the critical role of Tyr-194 in the catalytic activity of a novel N-acyl-homoserine lactonase from marine Bacillus cereus strain Y2
-
Lu, X., Yuan, Y., Xue, X. L., Zhang, G. P., and Zhou, S. N. (2006) Identification of the critical role of Tyr-194 in the catalytic activity of a novel N-acyl-homoserine lactonase from marine Bacillus cereus strain Y2. Curr. Microbiol. 53, 346-350.
-
(2006)
Curr. Microbiol
, vol.53
, pp. 346-350
-
-
Lu, X.1
Yuan, Y.2
Xue, X.L.3
Zhang, G.P.4
Zhou, S.N.5
-
36
-
-
15444376903
-
Effect of pH on the active site of an Arg121Cys mutant of the metallo-β-lactamase from Bacillus cereus: Implications for the enzyme mechanism
-
Davies, A. M., Rasia, R. M., Vila, A. J., Sutton, B. J., and Fabiane, S. M. (2005) Effect of pH on the active site of an Arg121Cys mutant of the metallo-β-lactamase from Bacillus cereus: Implications for the enzyme mechanism. Biochemistry 44, 4841-4849.
-
(2005)
Biochemistry
, vol.44
, pp. 4841-4849
-
-
Davies, A.M.1
Rasia, R.M.2
Vila, A.J.3
Sutton, B.J.4
Fabiane, S.M.5
-
37
-
-
34547094371
-
Asp120 locates Zn2 for optimal metallo-β- lactamase activity
-
Llarrull, L. I., Fabiane, S. M., Kowalski, J. M., Bennett, B., Sutton, B. J., and Vila, A. J. (2007) Asp120 locates Zn2 for optimal metallo-β- lactamase activity. J. Biol. Chem. 282, 18276-18285.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 18276-18285
-
-
Llarrull, L.I.1
Fabiane, S.M.2
Kowalski, J.M.3
Bennett, B.4
Sutton, B.J.5
Vila, A.J.6
-
38
-
-
0028295612
-
Role of the divalent metal ion in sugar binding, ring opening, and isomerization by D-xylose isomerase: Replacement of a catalytic metal by an amino acid
-
Allen, K. N., Lavie, A., Glasfeld, A., Tanada, T. N., Gerrity, D. P., Carlson, S. C., Farber, G. K., Petsko, G. A., and Ringe, D. (1994) Role of the divalent metal ion in sugar binding, ring opening, and isomerization by D-xylose isomerase: Replacement of a catalytic metal by an amino acid. Biochemistry 33, 1488-1494.
-
(1994)
Biochemistry
, vol.33
, pp. 1488-1494
-
-
Allen, K.N.1
Lavie, A.2
Glasfeld, A.3
Tanada, T.N.4
Gerrity, D.P.5
Carlson, S.C.6
Farber, G.K.7
Petsko, G.A.8
Ringe, D.9
-
39
-
-
34447571924
-
Antibiotics as signaling molecules
-
Yim, G., Wang, H. H., and Davies, J. (2007) Antibiotics as signaling molecules. Philos. Trans. R. Soc. London, Ser. B 362, 1195-1200.
-
(2007)
Philos. Trans. R. Soc. London, Ser. B
, vol.362
, pp. 1195-1200
-
-
Yim, G.1
Wang, H.H.2
Davies, J.3
|