-
1
-
-
0025312950
-
Sequence-directed curvature of DNA
-
Hagerman,P.J. (1990) Sequence-directed curvature of DNA. Annu. Rev. Biochem., 59, 755-781.
-
(1990)
Annu. Rev. Biochem
, vol.59
, pp. 755-781
-
-
Hagerman, P.J.1
-
3
-
-
0000154034
-
Architectural elements in nucleoprotein complexes
-
Crothers,D.M. (1993) Architectural elements in nucleoprotein complexes. Curr. Biol., 3, 675-676.
-
(1993)
Curr. Biol
, vol.3
, pp. 675-676
-
-
Crothers, D.M.1
-
4
-
-
33847164986
-
Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity
-
Garcia,H.G., Grayson,P., Han,L., Inamdar,M., Kondev,J., Nelson,P.C., Phillips,R., Widom,J. and Wiggins,P.A. (2007) Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity. Biopolymers, 85, 115-130.
-
(2007)
Biopolymers
, vol.85
, pp. 115-130
-
-
Garcia, H.G.1
Grayson, P.2
Han, L.3
Inamdar, M.4
Kondev, J.5
Nelson, P.C.6
Phillips, R.7
Widom, J.8
Wiggins, P.A.9
-
5
-
-
0027216519
-
The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures
-
Paull,T.T., Haykinson,M.J. and Johnson,R.C. (1993) The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev., 7, 1521-1534.
-
(1993)
Genes Dev
, vol.7
, pp. 1521-1534
-
-
Paull, T.T.1
Haykinson, M.J.2
Johnson, R.C.3
-
6
-
-
0028226799
-
DNA chaperones: A solution to a persistence problem
-
Travers,A.A., Ner,S.S. and Churchill,M.E.A. (1994) DNA chaperones: A solution to a persistence problem. Cell, 77, 167-169.
-
(1994)
Cell
, vol.77
, pp. 167-169
-
-
Travers, A.A.1
Ner, S.S.2
Churchill, M.E.A.3
-
7
-
-
0032716841
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Ali Azam,T., Iwata,A., Nishimura,A., Ueda,S. and Ishihama,A. (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol., 181, 6361-6370.
-
(1999)
J. Bacteriol
, vol.181
, pp. 6361-6370
-
-
Ali Azam, T.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
8
-
-
0032731196
-
Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity
-
Azam,T.A. and Ishihama,A. (1999) Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J. Biol. Chem., 274, 33105-33113.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 33105-33113
-
-
Azam, T.A.1
Ishihama, A.2
-
9
-
-
33750527566
-
The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: A molecular perspective
-
Luijsterburg,M.S., Noom,M.C., Wuite,G.J.L. and Dame,R.T. (2006) The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: A molecular perspective. J. Struct. Biol., 156, 262-272.
-
(2006)
J. Struct. Biol
, vol.156
, pp. 262-272
-
-
Luijsterburg, M.S.1
Noom, M.C.2
Wuite, G.J.L.3
Dame, R.T.4
-
10
-
-
0035895244
-
The role of rigidity in DNA looping-unlooping by AraC
-
Harmer,T., Wu,M. and Schleif,R. (2001) The role of rigidity in DNA looping-unlooping by AraC. Proc. Natl Acad. Sci. USA, 98, 427-431.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 427-431
-
-
Harmer, T.1
Wu, M.2
Schleif, R.3
-
11
-
-
0025202249
-
DNA looping and unlooping by AraC protein
-
Lobell,R.B. and Schleif,R.F. (1990) DNA looping and unlooping by AraC protein. Science, 250, 528-532.
-
(1990)
Science
, vol.250
, pp. 528-532
-
-
Lobell, R.B.1
Schleif, R.F.2
-
12
-
-
0026522733
-
DNA looping
-
Matthews,K.S. (1992) DNA looping. Microbiol. Rev., 56, 123-136.
-
(1992)
Microbiol. Rev
, vol.56
, pp. 123-136
-
-
Matthews, K.S.1
-
13
-
-
15744393452
-
DNA looping in gene regulation: From the assembly of macromolecular complexes to the control of transcriptional noise
-
Vilar,J.M. and Saiz,L. (2005) DNA looping in gene regulation: From the assembly of macromolecular complexes to the control of transcriptional noise. Curr. Opin. Genet. Dev., 15, 136-144.
-
(2005)
Curr. Opin. Genet. Dev
, vol.15
, pp. 136-144
-
-
Vilar, J.M.1
Saiz, L.2
-
14
-
-
19444387811
-
Bacterial repression loops require enhanced DNA flexibility
-
Becker,N.A., Kahn,J.D. and Maher,L.J. III (2005) Bacterial repression loops require enhanced DNA flexibility. J. Mol. Biol., 349, 716-730.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 716-730
-
-
Becker, N.A.1
Kahn, J.D.2
Maher III, L.J.3
-
15
-
-
34547642985
-
Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli
-
Becker,N.A., Kahn,J.D. and Maher,L.J. III (2007) Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli. Nucleic Acids Res., 35, 3988-4000.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3988-4000
-
-
Becker, N.A.1
Kahn, J.D.2
Maher III, L.J.3
-
16
-
-
23244443772
-
Dual binding modes for an HMG domain from human HMGB2 on DNA
-
McCauley,M., Hardwidge,P.R., Maher,L.J. III and Williams,M.C. (2005) Dual binding modes for an HMG domain from human HMGB2 on DNA. Biophys. J., 89, 353-364.
-
(2005)
Biophys. J
, vol.89
, pp. 353-364
-
-
McCauley, M.1
Hardwidge, P.R.2
Maher III, L.J.3
Williams, M.C.4
-
17
-
-
35748980855
-
HMGB binding to DNA: Single and double box motifs
-
McCauley,M.J., Zimmerman,J., Maher,L.J. III and Williams,M.C. (2007) HMGB binding to DNA: Single and double box motifs. J. Mol. Biol., 374, 993-1004.
-
(2007)
J. Mol. Biol
, vol.374
, pp. 993-1004
-
-
McCauley, M.J.1
Zimmerman, J.2
Maher III, L.J.3
Williams, M.C.4
-
18
-
-
0028970118
-
DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B
-
Paull,T.T. and Johnson,R.C. (1995) DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B. J. Biol. Chem. 270, 8744-8754.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 8744-8754
-
-
Paull, T.T.1
Johnson, R.C.2
-
19
-
-
0034815596
-
HMG proteins and DNA flexibility in transcription activation
-
Ross,E.D., Hardwidge,P.R. and Maher,L.J. III (2001) HMG proteins and DNA flexibility in transcription activation. Mol. Cell. Biol., 21 6598-6605.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 6598-6605
-
-
Ross, E.D.1
Hardwidge, P.R.2
Maher III, L.J.3
-
20
-
-
0034708330
-
DNA constraints on transcription activation in vitro
-
Ross,E.D., Keating,A.M. and Maher,L.J. III (2000) DNA constraints on transcription activation in vitro. J. Mol. Biol., 297, 321-334.
-
(2000)
J. Mol. Biol
, vol.297
, pp. 321-334
-
-
Ross, E.D.1
Keating, A.M.2
Maher III, L.J.3
-
21
-
-
0032562599
-
DNA bending by the chromosomal protein HMG1 and its high mobility group box domains - effect of flanking sequences
-
Stros,M. (1998) DNA bending by the chromosomal protein HMG1 and its high mobility group box domains - effect of flanking sequences. J. Biol. Chem., 273, 10355-10361.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 10355-10361
-
-
Stros, M.1
-
22
-
-
0028136642
-
DNA-binding parameters of the HU protein of Escherichia coli to cruciform DNA
-
Bonnefoy,E., Takahashi,M. and Yaniv,J.R. (1994) DNA-binding parameters of the HU protein of Escherichia coli to cruciform DNA. J. Mol. Biol., 242, 116-129.
-
(1994)
J. Mol. Biol
, vol.242
, pp. 116-129
-
-
Bonnefoy, E.1
Takahashi, M.2
Yaniv, J.R.3
-
23
-
-
0024962406
-
DNA ring closure mediated by protein HU
-
Hodges-Garcia,Y., Hagerman,P.J. and Pettijohn,D.E. (1989) DNA ring closure mediated by protein HU. J. Biol. Chem., 264, 14621-14623.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 14621-14623
-
-
Hodges-Garcia, Y.1
Hagerman, P.J.2
Pettijohn, D.E.3
-
24
-
-
0032945039
-
Role of HU and DNA supercoiling in transcription repression: Specialized nucleoprotein repression complex at gal promoters in Escherichia coli
-
Lewis,D.E., Geanacopoulos,M. and Adhya,S. (1999) Role of HU and DNA supercoiling in transcription repression: Specialized nucleoprotein repression complex at gal promoters in Escherichia coli. Mol. Microbiol., 31, 451-461.
-
(1999)
Mol. Microbiol
, vol.31
, pp. 451-461
-
-
Lewis, D.E.1
Geanacopoulos, M.2
Adhya, S.3
-
25
-
-
0027503254
-
Protein HU binds specifically to kinked DNA
-
Pontiggia,A., Negri,A., Beltrame,M. and Bianchi,M.E. (1993) Protein HU binds specifically to kinked DNA. Mol. Microbiol., 7, 343-350.
-
(1993)
Mol. Microbiol
, vol.7
, pp. 343-350
-
-
Pontiggia, A.1
Negri, A.2
Beltrame, M.3
Bianchi, M.E.4
-
26
-
-
7244245362
-
Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes
-
Skoko,D., Wong,B., Johnson,R.C. and Marko,J.F. (2004) Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes. Biochemistry, 43, 13867-13874.
-
(2004)
Biochemistry
, vol.43
, pp. 13867-13874
-
-
Skoko, D.1
Wong, B.2
Johnson, R.C.3
Marko, J.F.4
-
27
-
-
0041312645
-
Flexible DNA bending in HU-DNA cocrystal structures
-
Swinger,K.K., Lemberg,K.M., Zhang,Y. and Rice,P.A. (2003) Flexible DNA bending in HU-DNA cocrystal structures. EMBO J., 22, 3749-3760.
-
(2003)
EMBO J
, vol.22
, pp. 3749-3760
-
-
Swinger, K.K.1
Lemberg, K.M.2
Zhang, Y.3
Rice, P.A.4
-
28
-
-
1342324028
-
IHF and HU: Flexible architects of bent DNA
-
Swinger,K.K. and Rice,P.A. (2004) IHF and HU: Flexible architects of bent DNA. Curr. Opin. Struct. Biol., 14, 28-35.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 28-35
-
-
Swinger, K.K.1
Rice, P.A.2
-
29
-
-
2342454974
-
Dual architectural roles of HU: Formation of flexible hinges and rigid filaments
-
Van Noort,J., Verbrugge,S., Goosen,N., Dekker,C. and Dame,R.T. (2004) Dual architectural roles of HU: Formation of flexible hinges and rigid filaments. Proc. Natl Acad. Sci. USA, 101, 6969-6974.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6969-6974
-
-
Van Noort, J.1
Verbrugge, S.2
Goosen, N.3
Dekker, C.4
Dame, R.T.5
-
30
-
-
0030928287
-
Repressor induced site-specific binding of HU for transcriptional regulation
-
Aki,T. and Adhya,S. (1997) Repressor induced site-specific binding of HU for transcriptional regulation. EMBO J., 16, 3666-3674.
-
(1997)
EMBO J
, vol.16
, pp. 3666-3674
-
-
Aki, T.1
Adhya, S.2
-
31
-
-
0141482089
-
Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping
-
Lia,G., Bensimon,D., Croquette,V., Allemand,J.F., Dunlap,D., Lewis,D.E., Adhya,S. and Finzi,L. (2003) Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping. Proc. Natl Acad. Sci. USA, 100, 11373-11377.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11373-11377
-
-
Lia, G.1
Bensimon, D.2
Croquette, V.3
Allemand, J.F.4
Dunlap, D.5
Lewis, D.E.6
Adhya, S.7
Finzi, L.8
-
32
-
-
0029991026
-
Histone-like protein HU and bacterial DNA topology: Suppression of an HU deficiency by gyrase mutations
-
Malik,M., Bensaid,A., Rouviere-Yaniv,J. and Drlica,K. (1996) Histone-like protein HU and bacterial DNA topology: Suppression of an HU deficiency by gyrase mutations. J. Mol. Biol., 256, 66-76.
-
(1996)
J. Mol. Biol
, vol.256
, pp. 66-76
-
-
Malik, M.1
Bensaid, A.2
Rouviere-Yaniv, J.3
Drlica, K.4
-
33
-
-
0018405881
-
-
Rouviere-Yaniv,J., Yaniv,M. and Germond,J.E. (1979) E. coli DNA binding protein HU forms nucleosomelike structure with circular double-stranded DNA. Cell, 17, 265-274.
-
Rouviere-Yaniv,J., Yaniv,M. and Germond,J.E. (1979) E. coli DNA binding protein HU forms nucleosomelike structure with circular double-stranded DNA. Cell, 17, 265-274.
-
-
-
-
34
-
-
0028043678
-
Prokaryotic HU and eukaryotic HMG1: A kinked relationship
-
Bianchi,M.E. (1994) Prokaryotic HU and eukaryotic HMG1: A kinked relationship. Mol. Microbiol., 14, 1-5.
-
(1994)
Mol. Microbiol
, vol.14
, pp. 1-5
-
-
Bianchi, M.E.1
-
35
-
-
0033522480
-
Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding
-
Allain,F.H., Yen,Y.M., Masse,J.E., Schultze,P., Dieckmann,T., Johnson,R.C. and Feigon,J. (1999) Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding. EMBO J., 18, 2563-2579.
-
(1999)
EMBO J
, vol.18
, pp. 2563-2579
-
-
Allain, F.H.1
Yen, Y.M.2
Masse, J.E.3
Schultze, P.4
Dieckmann, T.5
Johnson, R.C.6
Feigon, J.7
-
36
-
-
0029563931
-
Structure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy
-
Hardman,C.H., Broadhurst,R.W., Raine,A.R., Grasser,K.D., Thomas,J.O. and Laue,E.D. (1995) Structure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy. Biochemistry, 34, 16596-16607.
-
(1995)
Biochemistry
, vol.34
, pp. 16596-16607
-
-
Hardman, C.H.1
Broadhurst, R.W.2
Raine, A.R.3
Grasser, K.D.4
Thomas, J.O.5
Laue, E.D.6
-
37
-
-
0034727674
-
Intercalating residues determine the mode of HMG1 domains A and B binding to cisplatin-modified DNA
-
He,Q., Ohndorf,U.M. and Lippard,S.J. (2000) Intercalating residues determine the mode of HMG1 domains A and B binding to cisplatin-modified DNA. Biochemistry, 39, 14426-14435.
-
(2000)
Biochemistry
, vol.39
, pp. 14426-14435
-
-
He, Q.1
Ohndorf, U.M.2
Lippard, S.J.3
-
38
-
-
0033617209
-
-
Jamieson,E.R., Jacobson,M.P., Barnes,C.M., Chow,C.S. and Lippard,S.J. (1999) Structural and kinetic studies of a cisplatin-modified DNA icosamer binding to HMG1 domain B. J. Biol. Chem., 274, 12346-12354.
-
Jamieson,E.R., Jacobson,M.P., Barnes,C.M., Chow,C.S. and Lippard,S.J. (1999) Structural and kinetic studies of a cisplatin-modified DNA icosamer binding to HMG1 domain B. J. Biol. Chem., 274, 12346-12354.
-
-
-
-
39
-
-
0037432325
-
Nature of full-length HMGB1 binding to cisplatin-modified DNA
-
Jung,Y. and Lippard,S.J. (2003) Nature of full-length HMGB1 binding to cisplatin-modified DNA. Biochemistry, 42, 2664-2671.
-
(2003)
Biochemistry
, vol.42
, pp. 2664-2671
-
-
Jung, Y.1
Lippard, S.J.2
-
40
-
-
0036404246
-
The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding
-
Masse,J.E., Wong,B., Yen,Y.M., Allain,F.H., Johnson,R.C. and Feigon,J. (2002) The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding. J. Mol. Biol., 323, 263-284.
-
(2002)
J. Mol. Biol
, vol.323
, pp. 263-284
-
-
Masse, J.E.1
Wong, B.2
Yen, Y.M.3
Allain, F.H.4
Johnson, R.C.5
Feigon, J.6
-
41
-
-
0033578010
-
Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins
-
Ohndorf,U.M., Rould,M.A., He,Q., Pabo,C.O. and Lippard,S.J. (1999) Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins. Nature, 399, 708-712.
-
(1999)
Nature
, vol.399
, pp. 708-712
-
-
Ohndorf, U.M.1
Rould, M.A.2
He, Q.3
Pabo, C.O.4
Lippard, S.J.5
-
42
-
-
33745242847
-
Structure of a complex of tandem HMG boxes and DNA
-
Stott,K., Tang,G.S., Lee,K.B. and Thomas,J.O. (2006) Structure of a complex of tandem HMG boxes and DNA. J. Mol. Biol., 360, 90-104.
-
(2006)
J. Mol. Biol
, vol.360
, pp. 90-104
-
-
Stott, K.1
Tang, G.S.2
Lee, K.B.3
Thomas, J.O.4
-
43
-
-
0027414641
-
Structure of the HMG box motif in the B-domain of HMG1
-
Weir,H.M., Kraulis,P.J., Hill,C.S., Raine,A.R.C., Laue,E.D. and Thomas,J.O. (1993) Structure of the HMG box motif in the B-domain of HMG1. EMBO J., 12, 1311-1319.
-
(1993)
EMBO J
, vol.12
, pp. 1311-1319
-
-
Weir, H.M.1
Kraulis, P.J.2
Hill, C.S.3
Raine, A.R.C.4
Laue, E.D.5
Thomas, J.O.6
-
44
-
-
4644219557
-
DNA binding and bending by HMG boxes: Energetic determinants of specificity
-
Dragan,A.I., Read,C.M., Makeyeva,E.N., Milgotina,E.I., Churchill,M.E., Crane-Robinson,C. and Privalov,P.L. (2004) DNA binding and bending by HMG boxes: Energetic determinants of specificity. J. Mol. Biol., 343, 371-393.
-
(2004)
J. Mol. Biol
, vol.343
, pp. 371-393
-
-
Dragan, A.I.1
Read, C.M.2
Makeyeva, E.N.3
Milgotina, E.I.4
Churchill, M.E.5
Crane-Robinson, C.6
Privalov, P.L.7
-
45
-
-
0033554438
-
DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer
-
Lorenz,M., Hillisch,A., Payet,D., Buttinelli,M., Travers,A. and Diekmann,S. (1999) DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer. Biochemistry, 38, 12150-12158.
-
(1999)
Biochemistry
, vol.38
, pp. 12150-12158
-
-
Lorenz, M.1
Hillisch, A.2
Payet, D.3
Buttinelli, M.4
Travers, A.5
Diekmann, S.6
-
46
-
-
0024519056
-
An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups
-
Manning,G.S., Ebralidse,K.K., Mirzabekov,A.D. and Rich,A. (1989) An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups. J. Biomol. Struct. Dyn., 6, 877-889.
-
(1989)
J. Biomol. Struct. Dyn
, vol.6
, pp. 877-889
-
-
Manning, G.S.1
Ebralidse, K.K.2
Mirzabekov, A.D.3
Rich, A.4
-
47
-
-
0028597967
-
DNA bending by asymmetric phosphate neutralization
-
Strauss,J.K. and Maher,L.J. III (1994) DNA bending by asymmetric phosphate neutralization. Science, 266, 1829-1834.
-
(1994)
Science
, vol.266
, pp. 1829-1834
-
-
Strauss, J.K.1
Maher III, L.J.2
-
48
-
-
0024300816
-
Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process
-
Bellomy,G., Mossing,M. and Record,M. (1988) Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process. Biochemistry, 27, 3900-3906.
-
(1988)
Biochemistry
, vol.27
, pp. 3900-3906
-
-
Bellomy, G.1
Mossing, M.2
Record, M.3
-
49
-
-
0023333893
-
lac repressor forms loops with linear DNA carrying two suitably spaced lac operators
-
Kramer,H., Niemoller,M., Amouyal,M., Revet,B., von Wilcken-Bergmann,B. and Müller-Hill,B. (1987) lac repressor forms loops with linear DNA carrying two suitably spaced lac operators. EMBO J., 6, 1481-1491.
-
(1987)
EMBO J
, vol.6
, pp. 1481-1491
-
-
Kramer, H.1
Niemoller, M.2
Amouyal, M.3
Revet, B.4
von Wilcken-Bergmann, B.5
Müller-Hill, B.6
-
50
-
-
0027510369
-
In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo
-
Law,S.M., Bellomy,G.R., Schlax,P.J. and Record,M.T. Jr. (1993) In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo. J. Mol. Biol., 230, 161-173.
-
(1993)
J. Mol. Biol
, vol.230
, pp. 161-173
-
-
Law, S.M.1
Bellomy, G.R.2
Schlax, P.J.3
Record Jr., M.T.4
-
51
-
-
0022529619
-
Upstream operators enhance repression of the lac promoter
-
Mossing,M.C. and Record,M.T. Jr. (1986) Upstream operators enhance repression of the lac promoter. Science, 233, 889-892.
-
(1986)
Science
, vol.233
, pp. 889-892
-
-
Mossing, M.C.1
Record Jr., M.T.2
-
52
-
-
0029975889
-
Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
-
Muller,J., Oehler,S. and Müller-Hill,B. (1996) Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator. J. Mol. Biol., 257, 21-29.
-
(1996)
J. Mol. Biol
, vol.257
, pp. 21-29
-
-
Muller, J.1
Oehler, S.2
Müller-Hill, B.3
-
53
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler,S., Eismann,E.R., Kramer,H. and Müller-Hill,B. (1990) The three operators of the lac operon cooperate in repression. EMBO J. 9, 973-979.
-
(1990)
EMBO J
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Kramer, H.3
Müller-Hill, B.4
-
54
-
-
33645991551
-
Statistical-mechanical theory of DNA looping
-
Zhang,Y., McEwen,A.E., Crothers,D.M. and Levene,S.D. (2006) Statistical-mechanical theory of DNA looping. Biophys. J., 90 1903-1912.
-
(2006)
Biophys. J
, vol.90
, pp. 1903-1912
-
-
Zhang, Y.1
McEwen, A.E.2
Crothers, D.M.3
Levene, S.D.4
-
55
-
-
34547852967
-
Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping
-
Zhang,Y., McEwen,A.E., Crothers,D.M. and Levene,S.D. (2006) Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping. PLoS ONE, 1, e136.
-
(2006)
PLoS ONE
, vol.1
-
-
Zhang, Y.1
McEwen, A.E.2
Crothers, D.M.3
Levene, S.D.4
-
56
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant,Z., Stone,M.D., Gore,J., Smith,S.B., Cozzarelli,N.R. and Bustamante,C. (2003) Structural transitions and elasticity from torque measurements on DNA. Nature, 424, 338-341.
-
(2003)
Nature
, vol.424
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
Smith, S.B.4
Cozzarelli, N.R.5
Bustamante, C.6
-
57
-
-
2342518189
-
Spontaneous sharp bending of double-stranded DNA
-
Cloutier,T.E. and Widom,J. (2004) Spontaneous sharp bending of double-stranded DNA. Mol. Cell, 14, 355-362.
-
(2004)
Mol. Cell
, vol.14
, pp. 355-362
-
-
Cloutier, T.E.1
Widom, J.2
-
58
-
-
17244362931
-
Cyclization of short DNA fragments and bending fluctuations of the double helix
-
Du,Q., Smith,C., Shiffeldrim,N., Vologodskaia,M. and Vologodskii,A. (2005) Cyclization of short DNA fragments and bending fluctuations of the double helix. Proc. Natl Acad. Sci. USA, 102, 5397-5402.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5397-5402
-
-
Du, Q.1
Smith, C.2
Shiffeldrim, N.3
Vologodskaia, M.4
Vologodskii, A.5
-
59
-
-
33749249391
-
DNA kinks available ... if needed
-
Maher,L.J. III (2006) DNA kinks available ... if needed. Structure 14, 1479-1480.
-
(2006)
Structure
, vol.14
, pp. 1479-1480
-
-
Maher III, L.J.1
-
60
-
-
0027242020
-
Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU
-
Megraw,T.L. and Chae,C.B. (1993) Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU. J. Biol. Chem., 268, 12758-12763.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 12758-12763
-
-
Megraw, T.L.1
Chae, C.B.2
-
61
-
-
0032529668
-
Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli
-
Whipple,F.W. (1998) Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli. Nucleic Acids Res., 26, 3700-3706.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3700-3706
-
-
Whipple, F.W.1
-
62
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko,K.A. and Wanner,B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA, 97, 6640-6645.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
64
-
-
0019321843
-
Equilibrium binding of inducer to lac repressor.operator DNA complex
-
O'Gorman,R.B., Rosenberg,J.M., Kallai,O.B., Dickerson,R.E., Itakura,K., Riggs,A.D. and Matthews,K.S. (1980) Equilibrium binding of inducer to lac repressor.operator DNA complex. J. Biol. Chem., 255, 10107-10114.
-
(1980)
J. Biol. Chem
, vol.255
, pp. 10107-10114
-
-
O'Gorman, R.B.1
Rosenberg, J.M.2
Kallai, O.B.3
Dickerson, R.E.4
Itakura, K.5
Riggs, A.D.6
Matthews, K.S.7
-
65
-
-
0034603806
-
Topological effects of the TATA box binding protein on minicircle DNA and a possible thermodynamic linkage to chromatin remodeling
-
Kahn,J.D. (2000) Topological effects of the TATA box binding protein on minicircle DNA and a possible thermodynamic linkage to chromatin remodeling. Biochemistry, 39, 3520-3524.
-
(2000)
Biochemistry
, vol.39
, pp. 3520-3524
-
-
Kahn, J.D.1
-
66
-
-
34248370213
-
Spiral structure of Escherichia coli HUalphabeta provides foundation for DNA supercoiling
-
Guo,F. and Adbya,S. (2007) Spiral structure of Escherichia coli HUalphabeta provides foundation for DNA supercoiling. Proc. Natl Acad. Sci. USA, 104, 4309-4314.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 4309-4314
-
-
Guo, F.1
Adbya, S.2
-
67
-
-
33750204880
-
DNA bending by bHLH charge variants
-
McDonald,R.J., Kahn,J.D. and Maher,L.J. III (2006) DNA bending by bHLH charge variants. Nucleic Acids Res., 34, 4846-4856.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4846-4856
-
-
McDonald, R.J.1
Kahn, J.D.2
Maher III, L.J.3
-
68
-
-
0035281548
-
HMG1 and 2, and related 'architectural' DNA-binding proteins
-
Thomas,J.O. and Travers,A.A. (2001) HMG1 and 2, and related 'architectural' DNA-binding proteins. Trends Biochem. Sci., 26 167-174.
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 167-174
-
-
Thomas, J.O.1
Travers, A.A.2
-
69
-
-
0033485515
-
The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition
-
Murphy,F.V.T., Sweet,R.M. and Churchill,M.E. (1999) The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. EMBO J., 18, 6610-6618.
-
(1999)
EMBO J
, vol.18
, pp. 6610-6618
-
-
Murphy, F.V.T.1
Sweet, R.M.2
Churchill, M.E.3
-
70
-
-
0035027953
-
A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription
-
Brewster,N.K., Johnston,G.C. and Singer,R.A. (2001) A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription. Mol. Cell. Biol., 21, 3491-3502.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 3491-3502
-
-
Brewster, N.K.1
Johnston, G.C.2
Singer, R.A.3
-
71
-
-
0035796454
-
Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome- binding factor SPN
-
Formosa,T., Eriksson,P., Wittmeyer,J., Ginn,J., Yu,Y. and Stillman,D.J. (2001) Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome- binding factor SPN. EMBO J., 20, 3506-3517.
-
(2001)
EMBO J
, vol.20
, pp. 3506-3517
-
-
Formosa, T.1
Eriksson, P.2
Wittmeyer, J.3
Ginn, J.4
Yu, Y.5
Stillman, D.J.6
-
72
-
-
0034610333
-
A new screen for protein interactions reveals that the Saccharomyces cerevisiae high mobility group proteins Nhp6A/B are involved in the regulation of the GAL1 promoter
-
Laser,H., Bongards,C., Schüller,J., Heck,S., Johnsson,N. and Lehming,N. (2000) A new screen for protein interactions reveals that the Saccharomyces cerevisiae high mobility group proteins Nhp6A/B are involved in the regulation of the GAL1 promoter. Proc. Natl Acad. Sci. USA, 97, 13732-13737.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13732-13737
-
-
Laser, H.1
Bongards, C.2
Schüller, J.3
Heck, S.4
Johnsson, N.5
Lehming, N.6
-
73
-
-
0034671620
-
Chromatin-mediated transcriptional regulation by the yeast architectural factors NHP6A and NHP6B
-
Moreira,J.M. and Holmberg,S. (2000) Chromatin-mediated transcriptional regulation by the yeast architectural factors NHP6A and NHP6B. EMBO J., 19, 6804-6813.
-
(2000)
EMBO J
, vol.19
, pp. 6804-6813
-
-
Moreira, J.M.1
Holmberg, S.2
-
74
-
-
0029825332
-
Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro
-
Paull,T.T., Carey,M. and Johnson,R.C. (1996) Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro. Genes Dev., 10, 2769-2781.
-
(1996)
Genes Dev
, vol.10
, pp. 2769-2781
-
-
Paull, T.T.1
Carey, M.2
Johnson, R.C.3
-
75
-
-
0033052037
-
The lack of chromosomal protein HMG1 does not disrupt cell growth but causes lethal hypoglycaemia in newborn mice
-
Calogero,S., Grassi,F., Aguzzi,A., Voigtlander,T., Ferrier,P., Ferrari,S. and Bianchi,M.E. (1999) The lack of chromosomal protein HMG1 does not disrupt cell growth but causes lethal hypoglycaemia in newborn mice. Nat. Gen., 22, 276-280.
-
(1999)
Nat. Gen
, vol.22
, pp. 276-280
-
-
Calogero, S.1
Grassi, F.2
Aguzzi, A.3
Voigtlander, T.4
Ferrier, P.5
Ferrari, S.6
Bianchi, M.E.7
-
76
-
-
11244293527
-
The Saccharomyces cerevisiae high mobility group box protein HMO1 contains two functional DNA binding domains
-
Kamau,E., Bauerle,K.T. and Grove,A. (2004) The Saccharomyces cerevisiae high mobility group box protein HMO1 contains two functional DNA binding domains. J. Biol. Chem., 279, 55234-55240.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 55234-55240
-
-
Kamau, E.1
Bauerle, K.T.2
Grove, A.3
-
77
-
-
34547147926
-
Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae
-
Dobi,K.C. and Winston,F. (2007) Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae. Mol. Cell. Biol., 27 5575-5586.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 5575-5586
-
-
Dobi, K.C.1
Winston, F.2
-
78
-
-
28044436995
-
Nucleoid remodeling by an altered HU protein: Reorganization of the transcription program
-
Kar,S., Edgar,R. and Adhya,S. (2005) Nucleoid remodeling by an altered HU protein: Reorganization of the transcription program. Proc. Natl Acad. Sci. USA, 102, 16397-16402.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 16397-16402
-
-
Kar, S.1
Edgar, R.2
Adhya, S.3
|