-
1
-
-
0035845534
-
Compaction of single DNA molecules induced by binding of integration host factor (IHF)
-
Ali B.M., Amit R., Braslavsky I., Oppenheim A.B., Gileadi O., and Stavans J. Compaction of single DNA molecules induced by binding of integration host factor (IHF). Proc. Natl. Acad. Sci. USA 98 (2001) 10658-10663
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10658-10663
-
-
Ali, B.M.1
Amit, R.2
Braslavsky, I.3
Oppenheim, A.B.4
Gileadi, O.5
Stavans, J.6
-
2
-
-
0036829677
-
The degree of oligomerization of the H-NS nucleoid structuring protein is related to specific binding to DNA
-
Badaut C., Williams R., Arluison V., Bouffartigues E., Robert B., Buc H., and Rimsky S. The degree of oligomerization of the H-NS nucleoid structuring protein is related to specific binding to DNA. J. Biol. Chem. 277 (2002) 41657-41666
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 41657-41666
-
-
Badaut, C.1
Williams, R.2
Arluison, V.3
Bouffartigues, E.4
Robert, B.5
Buc, H.6
Rimsky, S.7
-
3
-
-
0038136948
-
Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein
-
Beloin C., Jeusset J., Revet B., Mirambeau G., Le Hegarat F., and Le Cam E. Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein. J. Biol. Chem. 278 (2003) 5333-5342
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 5333-5342
-
-
Beloin, C.1
Jeusset, J.2
Revet, B.3
Mirambeau, G.4
Le Hegarat, F.5
Le Cam, E.6
-
4
-
-
0037336248
-
The H-NS dimerization domain defines a new fold contributing to DNA recognition
-
Bloch V., Yang Y., Margeat E., Chavanieu A., Auge M.T., Robert B., Arold S., Rimsky S., and Kochoyan M. The H-NS dimerization domain defines a new fold contributing to DNA recognition. Nat. Struct. Biol. 10 (2003) 212-218
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 212-218
-
-
Bloch, V.1
Yang, Y.2
Margeat, E.3
Chavanieu, A.4
Auge, M.T.5
Robert, B.6
Arold, S.7
Rimsky, S.8
Kochoyan, M.9
-
6
-
-
0032079493
-
Characterization of a prokaryotic SMC protein involved in chromosome partitioning
-
Britton R.A., Lin D.C., and Grossman A.D. Characterization of a prokaryotic SMC protein involved in chromosome partitioning. Genes Dev. 12 (1998) 1254-1259
-
(1998)
Genes Dev.
, vol.12
, pp. 1254-1259
-
-
Britton, R.A.1
Lin, D.C.2
Grossman, A.D.3
-
7
-
-
0028111825
-
The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli
-
Calvo J.M., and Matthews R.G. The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli. Microbiol. Rev. 58 (1994) 466-490
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 466-490
-
-
Calvo, J.M.1
Matthews, R.G.2
-
8
-
-
10244243805
-
DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminus
-
Ceci P., Cellai S., Falvo E., Rivetti C., Rossi G.L., and Chiancone E. DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminus. Nucleic Acids Res. 32 (2004) 5935-5944
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5935-5944
-
-
Ceci, P.1
Cellai, S.2
Falvo, E.3
Rivetti, C.4
Rossi, G.L.5
Chiancone, E.6
-
9
-
-
0029127850
-
A consensus sequence for binding of Lrp to DNA
-
Cui Y., Wang Q., Stormo G.D., and Calvo J.M. A consensus sequence for binding of Lrp to DNA. J. Bacteriol. 177 (1995) 4872-4880
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4872-4880
-
-
Cui, Y.1
Wang, Q.2
Stormo, G.D.3
Calvo, J.M.4
-
10
-
-
18444369954
-
The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
-
Dame R.T. The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin. Mol. Microbiol. 56 (2005) 858-870
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 858-870
-
-
Dame, R.T.1
-
11
-
-
0037048702
-
HU: promoting or counteracting DNA compaction?
-
Dame R.T., and Goosen N. HU: promoting or counteracting DNA compaction?. FEBS Lett. 529 (2002) 151-156
-
(2002)
FEBS Lett.
, vol.529
, pp. 151-156
-
-
Dame, R.T.1
Goosen, N.2
-
12
-
-
0034666271
-
H-NS mediated compaction of DNA visualised by atomic force microscopy
-
Dame R.T., Wyman C., and Goosen N. H-NS mediated compaction of DNA visualised by atomic force microscopy. Nucleic Acids Res. 28 (2000) 3504-3510
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3504-3510
-
-
Dame, R.T.1
Wyman, C.2
Goosen, N.3
-
13
-
-
0035083490
-
Structural basis for preferential binding of H-NS to curved DNA
-
Dame R.T., Wyman C., and Goosen N. Structural basis for preferential binding of H-NS to curved DNA. Biochimie 83 (2001) 231-234
-
(2001)
Biochimie
, vol.83
, pp. 231-234
-
-
Dame, R.T.1
Wyman, C.2
Goosen, N.3
-
14
-
-
14244261013
-
DNA bridging: a property shared among H-NS-like proteins
-
Dame R.T., Luijsterburg M.S., Krin E., Bertin P.N., Wagner R., and Wuite G.J. DNA bridging: a property shared among H-NS-like proteins. J. Bacteriol. 187 (2005) 1845-1848
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1845-1848
-
-
Dame, R.T.1
Luijsterburg, M.S.2
Krin, E.3
Bertin, P.N.4
Wagner, R.5
Wuite, G.J.6
-
15
-
-
26644455043
-
Analysis of scanning force microscopy images of protein-induced DNA bending using simulations
-
Dame R.T., van Mameren J., Luijsterburg M.S., Mysiak M.E., Janicijevic A., Pazdzior G., van derVliet P.C., Wyman C., and Wuite G.J. Analysis of scanning force microscopy images of protein-induced DNA bending using simulations. Nucleic Acids Res. 33 (2005) e68
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Dame, R.T.1
van Mameren, J.2
Luijsterburg, M.S.3
Mysiak, M.E.4
Janicijevic, A.5
Pazdzior, G.6
van derVliet, P.C.7
Wyman, C.8
Wuite, G.J.9
-
16
-
-
0035724314
-
Distribution of the Escherichia coli structural maintenance of chromosomes (SMC)-like protein MukB in the cell
-
den Blaauwen T., Lindqvist A., Lowe J., and Nanninga N. Distribution of the Escherichia coli structural maintenance of chromosomes (SMC)-like protein MukB in the cell. Mol. Microbiol. 42 (2001) 1179-1188
-
(2001)
Mol. Microbiol.
, vol.42
, pp. 1179-1188
-
-
den Blaauwen, T.1
Lindqvist, A.2
Lowe, J.3
Nanninga, N.4
-
17
-
-
25144495578
-
Organization of supercoil domains and their reorganization by transcription
-
Deng S., Stein R.A., and Higgins N.P. Organization of supercoil domains and their reorganization by transcription. Mol. Microbiol. 57 (2005) 1511-1521
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 1511-1521
-
-
Deng, S.1
Stein, R.A.2
Higgins, N.P.3
-
18
-
-
0036304119
-
Concerted binding and bending of DNA by Escherichia coli integration host factor
-
Dhavan G.M., Crothers D.M., Chance M.R., and Brenowitz M. Concerted binding and bending of DNA by Escherichia coli integration host factor. J. Mol. Biol. 315 (2002) 1027-1037
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 1027-1037
-
-
Dhavan, G.M.1
Crothers, D.M.2
Chance, M.R.3
Brenowitz, M.4
-
19
-
-
2442560235
-
H-NS: a universal regulator for a dynamic genome
-
Dorman C.J. H-NS: a universal regulator for a dynamic genome. Nat. Rev. Microbiol. 2 (2004) 391-400
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 391-400
-
-
Dorman, C.J.1
-
21
-
-
0029642089
-
In vivo interaction of the Escherichia coli integration host factor with its specific binding sites
-
Engelhorn M., Boccard F., Murtin C., Prentki P., and Geiselmann J. In vivo interaction of the Escherichia coli integration host factor with its specific binding sites. Nucleic Acids Res. 23 (1995) 2959-2965
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2959-2965
-
-
Engelhorn, M.1
Boccard, F.2
Murtin, C.3
Prentki, P.4
Geiselmann, J.5
-
22
-
-
0036928821
-
H-NS oligomerization domain structure reveals the mechanism for high order self-association of the intact protein
-
Esposito D., Petrovic A., Harris R., Ono S., Eccleston J.F., Mbabaali A., Haq I., Higgins C.F., Hinton J.C., Driscoll P.C., and Ladbury J.E. H-NS oligomerization domain structure reveals the mechanism for high order self-association of the intact protein. J. Mol. Biol. 324 (2002) 841-850
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 841-850
-
-
Esposito, D.1
Petrovic, A.2
Harris, R.3
Ono, S.4
Eccleston, J.F.5
Mbabaali, A.6
Haq, I.7
Higgins, C.F.8
Hinton, J.C.9
Driscoll, P.C.10
Ladbury, J.E.11
-
23
-
-
0024004997
-
Proteins from the prokaryotic nucleoid: primary and quaternary structure of the 15-kDa Escherichia coli DNA binding protein H-NS
-
Falconi M., Gualtieri M.T., La Teana A., Losso M.A., and Pon C.L. Proteins from the prokaryotic nucleoid: primary and quaternary structure of the 15-kDa Escherichia coli DNA binding protein H-NS. Mol. Microbiol. 2 (1988) 323-329
-
(1988)
Mol. Microbiol.
, vol.2
, pp. 323-329
-
-
Falconi, M.1
Gualtieri, M.T.2
La Teana, A.3
Losso, M.A.4
Pon, C.L.5
-
24
-
-
0942279510
-
Nucleoid restructuring in stationary-state bacteria
-
Frenkiel-Krispin D., Ben-Avraham I., Englander J., Shimoni E., Wolf S.G., and Minsky A. Nucleoid restructuring in stationary-state bacteria. Mol. Microbiol. 51 (2004) 395-405
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 395-405
-
-
Frenkiel-Krispin, D.1
Ben-Avraham, I.2
Englander, J.3
Shimoni, E.4
Wolf, S.G.5
Minsky, A.6
-
25
-
-
0025180835
-
Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
-
Goodrich J.A., Schwartz M.L., and McClure W.R. Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res. 18 (1990) 4993-5000
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4993-5000
-
-
Goodrich, J.A.1
Schwartz, M.L.2
McClure, W.R.3
-
26
-
-
0031959912
-
The crystal structure of Dps, a ferritin homolog that binds and protects DNA
-
Grant R.A., Filman D.J., Finkel S.E., Kolter R., and Hogle J.M. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nat. Struct. Biol. 5 (1998) 294-303
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 294-303
-
-
Grant, R.A.1
Filman, D.J.2
Finkel, S.E.3
Kolter, R.4
Hogle, J.M.5
-
27
-
-
0035119398
-
SMC proteins in bacteria: condensation motors for chromosome segregation?
-
Graumann P.L. SMC proteins in bacteria: condensation motors for chromosome segregation?. Biochimie 83 (2001) 53-59
-
(2001)
Biochimie
, vol.83
, pp. 53-59
-
-
Graumann, P.L.1
-
28
-
-
25144476232
-
A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure
-
Hardy C.D., and Cozzarelli N.R. A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure. Mol. Microbiol. 57 (2005) 1636-1652
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 1636-1652
-
-
Hardy, C.D.1
Cozzarelli, N.R.2
-
29
-
-
25144465292
-
Domain behavior and supercoil dynamics in bacterial chromosomes
-
Patrick Higgins N. (Ed), ACM Press, Washington, DC Chapter 6
-
Higgins N.P., Deng S., Pang Z., Stein R., Champion K., and Manna D. Domain behavior and supercoil dynamics in bacterial chromosomes. In: Patrick Higgins N. (Ed). The Bacterial Chromosome (2005), ACM Press, Washington, DC 133-153 Chapter 6
-
(2005)
The Bacterial Chromosome
, pp. 133-153
-
-
Higgins, N.P.1
Deng, S.2
Pang, Z.3
Stein, R.4
Champion, K.5
Manna, D.6
-
30
-
-
3343008805
-
Positive and negative regulation of SMC-DNA interactions by ATP and accessory proteins
-
Hirano M., and Hirano T. Positive and negative regulation of SMC-DNA interactions by ATP and accessory proteins. EMBO J. 23 (2004) 2664-2673
-
(2004)
EMBO J.
, vol.23
, pp. 2664-2673
-
-
Hirano, M.1
Hirano, T.2
-
31
-
-
30744441604
-
Opening closed arms: long-distance activation of SMC ATPase by hinge-DNA interactions
-
Hirano M., and Hirano T. Opening closed arms: long-distance activation of SMC ATPase by hinge-DNA interactions. Mol. Cell 21 (2006) 175-186
-
(2006)
Mol. Cell
, vol.21
, pp. 175-186
-
-
Hirano, M.1
Hirano, T.2
-
32
-
-
0034705293
-
Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily
-
Hopfner K.P., Karcher A., Shin D.S., Craig L., Arthur L.M., Carney J.P., and Tainer J.A. Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily. Cell 101 (2000) 789-800
-
(2000)
Cell
, vol.101
, pp. 789-800
-
-
Hopfner, K.P.1
Karcher, A.2
Shin, D.S.3
Craig, L.4
Arthur, L.M.5
Carney, J.P.6
Tainer, J.A.7
-
33
-
-
0033591426
-
An Lrp-type transcriptional regulator from Agrobacterium tumefaciens condenses more than 100 nucleotides of DNA into globular nucleoprotein complexes
-
Jafri S., Evoy S., Cho K., Craighead H.G., and Winans S.C. An Lrp-type transcriptional regulator from Agrobacterium tumefaciens condenses more than 100 nucleotides of DNA into globular nucleoprotein complexes. J. Mol. Biol. 288 (1999) 811-824
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 811-824
-
-
Jafri, S.1
Evoy, S.2
Cho, K.3
Craighead, H.G.4
Winans, S.C.5
-
34
-
-
0022545522
-
Host protein requirements for in vitro site-specific DNA inversion
-
Johnson R.C., Bruist M.F., and Simon M.I. Host protein requirements for in vitro site-specific DNA inversion. Cell 46 (1986) 531-539
-
(1986)
Cell
, vol.46
, pp. 531-539
-
-
Johnson, R.C.1
Bruist, M.F.2
Simon, M.I.3
-
35
-
-
14244263426
-
Major Nucleoid Proteins in the Structure and Function of the Escherichia coli Chromosome
-
Patrick Higgins N. (Ed), ACM Press, Washington, DC Chapter 5
-
Johnson R.C., Johnson L.M., Schmidt J.W., and Gardner J.F. Major Nucleoid Proteins in the Structure and Function of the Escherichia coli Chromosome. In: Patrick Higgins N. (Ed). The Bacterial Chromosome (2005), ACM Press, Washington, DC 65-131 Chapter 5
-
(2005)
The Bacterial Chromosome
, pp. 65-131
-
-
Johnson, R.C.1
Johnson, L.M.2
Schmidt, J.W.3
Gardner, J.F.4
-
36
-
-
0030985973
-
DNA binding is not sufficient for H-NS-mediated repression of proU expression
-
Jordi B.J., Fielder A.E., Burns C.M., Hinton J.C., Dover N., Ussery D.W., and Higgins C.F. DNA binding is not sufficient for H-NS-mediated repression of proU expression. J. Biol. Chem. 272 (1997) 12083-12090
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 12083-12090
-
-
Jordi, B.J.1
Fielder, A.E.2
Burns, C.M.3
Hinton, J.C.4
Dover, N.5
Ussery, D.W.6
Higgins, C.F.7
-
37
-
-
0025362475
-
Requirement of integration host factor (IHF) for growth of Escherichia coli deficient in HU protein
-
Kano Y., and Imamoto F. Requirement of integration host factor (IHF) for growth of Escherichia coli deficient in HU protein. Gene 89 (1990) 133-137
-
(1990)
Gene
, vol.89
, pp. 133-137
-
-
Kano, Y.1
Imamoto, F.2
-
38
-
-
28044436995
-
Nucleoid remodeling by an altered HU protein: reorganization of the transcription program
-
Kar S., Edgar R., and Adhya S. Nucleoid remodeling by an altered HU protein: reorganization of the transcription program. Proc. Natl. Acad. Sci. USA 102 (2005) 16397-16402
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 16397-16402
-
-
Kar, S.1
Edgar, R.2
Adhya, S.3
-
39
-
-
4644220369
-
Structural biochemistry of ATP-driven dimerization and DNA-stimulated activation of SMC ATPases
-
Lammens A., Schele A., and Hopfner K.P. Structural biochemistry of ATP-driven dimerization and DNA-stimulated activation of SMC ATPases. Curr. Biol. 14 (2004) 1778-1782
-
(2004)
Curr. Biol.
, vol.14
, pp. 1778-1782
-
-
Lammens, A.1
Schele, A.2
Hopfner, K.P.3
-
40
-
-
0035282970
-
Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus
-
Leonard P.M., Smits S.H., Sedelnikova S.E., Brinkman A.B., de Vos W.M., van der Oost J., Rice D.W., and Rafferty J.B. Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus. EMBO J. 20 (2001) 990-997
-
(2001)
EMBO J.
, vol.20
, pp. 990-997
-
-
Leonard, P.M.1
Smits, S.H.2
Sedelnikova, S.E.3
Brinkman, A.B.4
de Vos, W.M.5
van der Oost, J.6
Rice, D.W.7
Rafferty, J.B.8
-
41
-
-
0036776765
-
Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo
-
Lindow J.C., Britton R.A., and Grossman A.D. Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo. J. Bacteriol. 184 (2002) 5317-5322
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5317-5322
-
-
Lindow, J.C.1
Britton, R.A.2
Grossman, A.D.3
-
42
-
-
0033485813
-
Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer
-
Lorenz M., Hillisch A., Goodman S.D., and Diekmann S. Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer. Nucleic Acids Res. 27 (1999) 4619-4625
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4619-4625
-
-
Lorenz, M.1
Hillisch, A.2
Goodman, S.D.3
Diekmann, S.4
-
43
-
-
22344439942
-
Dynamic molecular linkers of the genome: the first decade of SMC proteins
-
Losada A., and Hirano T. Dynamic molecular linkers of the genome: the first decade of SMC proteins. Genes Dev. 19 (2005) 1269-1287
-
(2005)
Genes Dev.
, vol.19
, pp. 1269-1287
-
-
Losada, A.1
Hirano, T.2
-
44
-
-
25444497212
-
Dynamic assembly, localization and proteolysis of the Bacillus subtilis SMC complex
-
Mascarenhas J., Volkov A.V., Rinn C., Schiener J., Guckenberger R., and Graumann P.L. Dynamic assembly, localization and proteolysis of the Bacillus subtilis SMC complex. BMC Cell Biol. 6 (2005) 28
-
(2005)
BMC Cell Biol.
, vol.6
, pp. 28
-
-
Mascarenhas, J.1
Volkov, A.V.2
Rinn, C.3
Schiener, J.4
Guckenberger, R.5
Graumann, P.L.6
-
45
-
-
0032555919
-
The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge
-
Melby T.E., Ciampaglio C.N., Briscoe G., and Erickson H.P. The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge. J. Cell Biol. 142 (1998) 1595-1604
-
(1998)
J. Cell Biol.
, vol.142
, pp. 1595-1604
-
-
Melby, T.E.1
Ciampaglio, C.N.2
Briscoe, G.3
Erickson, H.P.4
-
47
-
-
22244481613
-
The structure and function of SMC and kleisin complexes
-
Nasmyth K., and Haering C.H. The structure and function of SMC and kleisin complexes. Annu. Rev. Biochem. 74 (2005) 595-648
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 595-648
-
-
Nasmyth, K.1
Haering, C.H.2
-
48
-
-
19244372639
-
Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts
-
Pan C.Q., Finkel S.E., Cramton S.E., Feng J.A., Sigman D.S., and Johnson R.C. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. J. Mol. Biol. 264 (1996) 675-695
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 675-695
-
-
Pan, C.Q.1
Finkel, S.E.2
Cramton, S.E.3
Feng, J.A.4
Sigman, D.S.5
Johnson, R.C.6
-
49
-
-
0028970118
-
DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B. Consequences for nucleoprotein complex assembly and chromatin condensation
-
Paull T.T., and Johnson R.C. DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B. Consequences for nucleoprotein complex assembly and chromatin condensation. J. Biol. Chem. 270 (1995) 8744-8754
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 8744-8754
-
-
Paull, T.T.1
Johnson, R.C.2
-
50
-
-
0027216519
-
The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures
-
Paull T.T., Haykinson M.J., and Johnson R.C. The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev. 7 (1993) 1521-1534
-
(1993)
Genes Dev.
, vol.7
, pp. 1521-1534
-
-
Paull, T.T.1
Haykinson, M.J.2
Johnson, R.C.3
-
51
-
-
0029082683
-
The DpsA protein of Synechococcus sp. Strain PCC7942 is a DNA-binding hemoprotein. Linkage of the Dps and bacterioferritin protein families
-
Pena M.M., and Bullerjahn G.S. The DpsA protein of Synechococcus sp. Strain PCC7942 is a DNA-binding hemoprotein. Linkage of the Dps and bacterioferritin protein families. J. Biol. Chem. 270 (1995) 22478-22482
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22478-22482
-
-
Pena, M.M.1
Bullerjahn, G.S.2
-
53
-
-
3142774839
-
Topological domain structure of the Escherichia coli chromosome
-
Postow L., Hardy C.D., Arsuaga J., and Cozzarelli N.R. Topological domain structure of the Escherichia coli chromosome. Genes Dev. 18 (2004) 1766-1779
-
(2004)
Genes Dev.
, vol.18
, pp. 1766-1779
-
-
Postow, L.1
Hardy, C.D.2
Arsuaga, J.3
Cozzarelli, N.R.4
-
54
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn
-
Rice P.A., Yang S., Mizuuchi K., and Nash H.A. Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 87 (1996) 1295-1306
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.2
Mizuuchi, K.3
Nash, H.A.4
-
55
-
-
0033575742
-
Wrapping of DNA around the E. coli RNA polymerase open promoter complex
-
Rivetti C., Guthold M., and Bustamante C. Wrapping of DNA around the E. coli RNA polymerase open promoter complex. EMBO J. 18 (1999) 4464-4475
-
(1999)
EMBO J.
, vol.18
, pp. 4464-4475
-
-
Rivetti, C.1
Guthold, M.2
Bustamante, C.3
-
56
-
-
0018405881
-
E. coli DNA binding protein HU forms nucleosome like structure with circular double-stranded DNA
-
Rouviere-Yaniv J., Yaniv M., and Germond J.E. E. coli DNA binding protein HU forms nucleosome like structure with circular double-stranded DNA. Cell 17 (1979) 265-274
-
(1979)
Cell
, vol.17
, pp. 265-274
-
-
Rouviere-Yaniv, J.1
Yaniv, M.2
Germond, J.E.3
-
57
-
-
3342959174
-
Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes
-
Sagi D., Friedman N., Vorgias C., Oppenheim A.B., and Stavans J. Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes. J. Mol. Biol. 341 (2004) 419-428
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 419-428
-
-
Sagi, D.1
Friedman, N.2
Vorgias, C.3
Oppenheim, A.B.4
Stavans, J.5
-
58
-
-
0033404486
-
A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli
-
Schneider R., Travers A., Kutateladze T., and Muskhelishvili G. A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol. Microbiol. 34 (1999) 953-964
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 953-964
-
-
Schneider, R.1
Travers, A.2
Kutateladze, T.3
Muskhelishvili, G.4
-
59
-
-
0035945265
-
An architectural role of the Escherichia coli chromatin protein FIS in organising DNA
-
Schneider R., Lurz R., Luder G., Tolksdorf C., Travers A., and Muskhelishvili G. An architectural role of the Escherichia coli chromatin protein FIS in organising DNA. Nucleic Acids Res. 29 (2001) 5107-5114
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 5107-5114
-
-
Schneider, R.1
Lurz, R.2
Luder, G.3
Tolksdorf, C.4
Travers, A.5
Muskhelishvili, G.6
-
60
-
-
0028900971
-
Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli
-
Shindo H., Iwaki T., Ieda R., Kurumizaka H., Ueguchi C., Mizuno T., Morikawa S., Nakamura H., and Kuboniwa H. Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett. 360 (1995) 125-131
-
(1995)
FEBS Lett.
, vol.360
, pp. 125-131
-
-
Shindo, H.1
Iwaki, T.2
Ieda, R.3
Kurumizaka, H.4
Ueguchi, C.5
Mizuno, T.6
Morikawa, S.7
Nakamura, H.8
Kuboniwa, H.9
-
61
-
-
0033027096
-
Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy
-
Shindo H., Ohnuki A., Ginba H., Katoh E., Ueguchi C., Mizuno T., and Yamazaki T. Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy. FEBS Lett. 455 (1999) 63-69
-
(1999)
FEBS Lett.
, vol.455
, pp. 63-69
-
-
Shindo, H.1
Ohnuki, A.2
Ginba, H.3
Katoh, E.4
Ueguchi, C.5
Mizuno, T.6
Yamazaki, T.7
-
62
-
-
28844478332
-
Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein fis
-
Skoko D., Yan J., Johnson R.C., and Marko J.F. Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein fis. Phys. Rev. Lett. 95 (2005) 208101
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 208101
-
-
Skoko, D.1
Yan, J.2
Johnson, R.C.3
Marko, J.F.4
-
63
-
-
0034072251
-
Oligomerization of the chromatin-structuring protein H-NS
-
Smyth C.P., Lundback T., Renzoni D., Siligardi G., Beavil R., Layton M., Sidebotham J.M., Hinton J.C., Driscoll P.C., Higgins C.F., and Ladbury J.E. Oligomerization of the chromatin-structuring protein H-NS. Mol. Microbiol. 36 (2000) 962-972
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 962-972
-
-
Smyth, C.P.1
Lundback, T.2
Renzoni, D.3
Siligardi, G.4
Beavil, R.5
Layton, M.6
Sidebotham, J.M.7
Hinton, J.C.8
Driscoll, P.C.9
Higgins, C.F.10
Ladbury, J.E.11
-
64
-
-
0026573628
-
Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy
-
Spurio R., Durrenberger M., Falconi M., La Teana A., Pon C.L., and Gualerzi C.O. Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy. Mol. Gen. Genet. 231 (1992) 201-211
-
(1992)
Mol. Gen. Genet.
, vol.231
, pp. 201-211
-
-
Spurio, R.1
Durrenberger, M.2
Falconi, M.3
La Teana, A.4
Pon, C.L.5
Gualerzi, C.O.6
-
65
-
-
32044468061
-
SMC complexes in bacterial chromosome condensation and segregation
-
Strunnikov A.V. SMC complexes in bacterial chromosome condensation and segregation. Plasmid 55 (2006) 135-144
-
(2006)
Plasmid
, vol.55
, pp. 135-144
-
-
Strunnikov, A.V.1
-
66
-
-
1342324028
-
IHF and HU: flexible architects of bent DNA
-
Swinger K.K., and Rice P.A. IHF and HU: flexible architects of bent DNA. Curr. Opin. Struct. Biol. 14 (2004) 28-35
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 28-35
-
-
Swinger, K.K.1
Rice, P.A.2
-
67
-
-
0041312645
-
Flexible DNA bending in HU-DNA cocrystal structures
-
Swinger K.K., Lemberg K.M., Zhang Y., and Rice P.A. Flexible DNA bending in HU-DNA cocrystal structures. EMBO J. 22 (2003) 3749-3760
-
(2003)
EMBO J.
, vol.22
, pp. 3749-3760
-
-
Swinger, K.K.1
Lemberg, K.M.2
Zhang, Y.3
Rice, P.A.4
-
68
-
-
0032716841
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Talukder A.A., Iwata A., Nishimura A., Ueda S., and Ishihama A. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181 (1999) 6361-6370
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6361-6370
-
-
Talukder, A.A.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
69
-
-
0028825609
-
Role of HU proteins in forming and constraining supercoils of chromosomal DNA in Escherichia coli
-
Tanaka H., Yasuzawa K., Kohno K., Goshima N., Kano Y., Saiki T., and Imamoto F. Role of HU proteins in forming and constraining supercoils of chromosomal DNA in Escherichia coli. Mol. Gen. Genet. 248 (1995) 518-526
-
(1995)
Mol. Gen. Genet.
, vol.248
, pp. 518-526
-
-
Tanaka, H.1
Yasuzawa, K.2
Kohno, K.3
Goshima, N.4
Kano, Y.5
Saiki, T.6
Imamoto, F.7
-
70
-
-
33645525801
-
Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family
-
Thaw P., Sedelnikova S.E., Muranova T., Wiese S., Ayora S., Alonso J.C., Brinkman A.B., Akerboom J., van der Oost J., and Rafferty J.B. Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family. Nucleic Acids Res. 34 (2006) 1439-1449
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1439-1449
-
-
Thaw, P.1
Sedelnikova, S.E.2
Muranova, T.3
Wiese, S.4
Ayora, S.5
Alonso, J.C.6
Brinkman, A.B.7
Akerboom, J.8
van der Oost, J.9
Rafferty, J.B.10
-
72
-
-
2342454974
-
Dual architectural roles of HU: formation of flexible hinges and rigid filaments
-
van Noort J., Verbrugge S., Goosen N., Dekker C., and Dame R.T. Dual architectural roles of HU: formation of flexible hinges and rigid filaments. Proc. Natl. Acad. Sci. USA 101 (2004) 6969-6974
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6969-6974
-
-
van Noort, J.1
Verbrugge, S.2
Goosen, N.3
Dekker, C.4
Dame, R.T.5
-
73
-
-
0042132009
-
A prokaryotic condensin/cohesin-like complex can actively compact chromosomes from a single position on the nucleoid and binds to DNA as a ring-like structure
-
Volkov A., Mascarenhas J., Andrei-Selmer C., Ulrich H.D., and Graumann P.L. A prokaryotic condensin/cohesin-like complex can actively compact chromosomes from a single position on the nucleoid and binds to DNA as a ring-like structure. Mol. Cell. Biol. 23 (2003) 5638-5650
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 5638-5650
-
-
Volkov, A.1
Mascarenhas, J.2
Andrei-Selmer, C.3
Ulrich, H.D.4
Graumann, P.L.5
-
74
-
-
0033168858
-
DNA protection by stress-induced biocrystallization
-
Wolf S.G., Frenkiel D., Arad T., Finkel S.E., Kolter R., and Minsky A. DNA protection by stress-induced biocrystallization. Nature 400 (1999) 83-85
-
(1999)
Nature
, vol.400
, pp. 83-85
-
-
Wolf, S.G.1
Frenkiel, D.2
Arad, T.3
Finkel, S.E.4
Kolter, R.5
Minsky, A.6
-
75
-
-
0024279845
-
Transcription generates positively and negatively supercoiled domains in the template
-
Wu H.Y., Shyy S.H., Wang J.C., and Liu L.F. Transcription generates positively and negatively supercoiled domains in the template. Cell 53 (1988) 433-440
-
(1988)
Cell
, vol.53
, pp. 433-440
-
-
Wu, H.Y.1
Shyy, S.H.2
Wang, J.C.3
Liu, L.F.4
-
76
-
-
0033229882
-
Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli
-
Yamazoe M., Onogi T., Sunako Y., Niki H., Yamanaka K., Ichimura T., and Hiraga S. Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli. EMBO J. 18 (1999) 5873-5884
-
(1999)
EMBO J.
, vol.18
, pp. 5873-5884
-
-
Yamazoe, M.1
Onogi, T.2
Sunako, Y.3
Niki, H.4
Yamanaka, K.5
Ichimura, T.6
Hiraga, S.7
-
77
-
-
0029561532
-
Comparison of protein binding to DNA in vivo and in vitro: defining an effective intracellular target
-
Yang S.W., and Nash H.A. Comparison of protein binding to DNA in vivo and in vitro: defining an effective intracellular target. EMBO J. 14 (1995) 6292-6300
-
(1995)
EMBO J.
, vol.14
, pp. 6292-6300
-
-
Yang, S.W.1
Nash, H.A.2
|