-
1
-
-
0016355478
-
A new look at the statistical model identification
-
AKAIKE, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723.
-
(1974)
IEEE Transactions on Automatic Control
, vol.19
, pp. 716-723
-
-
AKAIKE, H.1
-
2
-
-
0025183708
-
Basic local alignment search tool
-
ALTSCHUL, S. F., W. GISH, W. MILLER, E. MYERS, AND D. LIPMAN. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
ALTSCHUL, S.F.1
GISH, W.2
MILLER, W.3
MYERS, E.4
LIPMAN, D.5
-
3
-
-
0037393246
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
-
APG II [Angiosperm Phylogeny Group
-
APG II [Angiosperm Phylogeny Group]. 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Botanical Journal of the Linnean Society 141: 399-436.
-
(2003)
Botanical Journal of the Linnean Society
, vol.141
, pp. 399-436
-
-
-
4
-
-
0034700123
-
Independent and combined analyses of sequences from all three genomic compartments converge on the root of the flowering plant phylogeny
-
BARKMAN, T. J., G. CHENERY, J. R. MCNEAL, J. LYONS-WEILER, W. J. ELLISENS, G. MOORE, A. D. WOLFE, AND C. W. DEPAMPHILIS. 2000. Independent and combined analyses of sequences from all three genomic compartments converge on the root of the flowering plant phylogeny. Proceedings of the National Academy of Sciences, USA 97: 13166-13171.
-
(2000)
Proceedings of the National Academy of Sciences, USA
, vol.97
, pp. 13166-13171
-
-
BARKMAN, T.J.1
CHENERY, G.2
MCNEAL, J.R.3
LYONS-WEILER, J.4
ELLISENS, W.J.5
MOORE, G.6
WOLFE, A.D.7
DEPAMPHILIS, C.W.8
-
5
-
-
20444491634
-
A review of long-branch attraction
-
BERGSTEN, J. 2005. A review of long-branch attraction. Cladistics 21: 163-193.
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
BERGSTEN, J.1
-
6
-
-
0037819441
-
Widespread horizontal transfer of mitochondrial genes in flowering plants
-
BERGTHORSSON, U., K. L. ADAMS, B. THOMASON, AND J. D. PALMER. 2003. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424: 197-201.
-
(2003)
Nature
, vol.424
, pp. 197-201
-
-
BERGTHORSSON, U.1
ADAMS, K.L.2
THOMASON, B.3
PALMER, J.D.4
-
7
-
-
11144228905
-
Massive horizontal gene transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella
-
BERGTHORSSON, U., A. RICHARDSON, G. YOUNG, L. GOERTZEN, AND J. D. PALMER. 2004. Massive horizontal gene transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella. Proceedings of the National Academy of Sciences, USA 101: 17747-17752.
-
(2004)
Proceedings of the National Academy of Sciences, USA
, vol.101
, pp. 17747-17752
-
-
BERGTHORSSON, U.1
RICHARDSON, A.2
YOUNG, G.3
GOERTZEN, L.4
PALMER, J.D.5
-
8
-
-
0034636023
-
-
BOWE, L. M., M. COAT, AND C. W. DEPAMPHILIS. 2000. Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proceedings of the National Academy of Sciences, USA 97: 4092-4097.
-
BOWE, L. M., M. COAT, AND C. W. DEPAMPHILIS. 2000. Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proceedings of the National Academy of Sciences, USA 97: 4092-4097.
-
-
-
-
9
-
-
0029910508
-
Effects of RNA editing and gene processing on phylogenetic reconstruction
-
BOWE, L. M., AND C. W. DEPAMPHILIS. 1996. Effects of RNA editing and gene processing on phylogenetic reconstruction. Molecular Biology and Evolution 13: 1159-1166.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 1159-1166
-
-
BOWE, L.M.1
DEPAMPHILIS, C.W.2
-
10
-
-
33750508298
-
Complete chloroplast genome sequences of Drimys, Liriodendron, and Piper: Implications for the phylogeny of magnoliids
-
CAI, Z., C. PENAFLOR, J. V. KUEHL, J. LEEBENS-MACK, J. E. CARLSON, C. W. DEPAMPHILIS, J. L. BOORE, AND R. K. JANSEN. 2006. Complete chloroplast genome sequences of Drimys, Liriodendron, and Piper: Implications for the phylogeny of magnoliids. BMC Evolutionary Biology 6: 77.
-
(2006)
BMC Evolutionary Biology
, vol.6
, pp. 77
-
-
CAI, Z.1
PENAFLOR, C.2
KUEHL, J.V.3
LEEBENS-MACK, J.4
CARLSON, J.E.5
DEPAMPHILIS, C.W.6
BOORE, J.L.7
JANSEN, R.K.8
-
11
-
-
39749142161
-
The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
-
CHAW, S.-M., A. CHUN-CHIEH SHIH, D. WANG, Y.-W. WU, S.-M. LIU, AND T.-Y. CHOU. 2008. The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites. Molecular Biology and Evolution 25: 603-615.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 603-615
-
-
CHAW, S.-M.1
CHUN-CHIEH SHIH, A.2
WANG, D.3
WU, Y.-W.4
LIU, S.-M.5
CHOU, T.-Y.6
-
12
-
-
0032564449
-
Explosive invasion of plant mitochondria by a group I intron
-
CHO, Y., Y.-L. QIU, P. KUHLMAN, AND J. D. PALMER. 1998. Explosive invasion of plant mitochondria by a group I intron. Proceedings of the National Academy of Sciences, USA 95: 14244-14249.
-
(1998)
Proceedings of the National Academy of Sciences, USA
, vol.95
, pp. 14244-14249
-
-
CHO, Y.1
QIU, Y.-L.2
KUHLMAN, P.3
PALMER, J.D.4
-
13
-
-
0036221248
-
When does the incongruence length difference test fail?
-
DARLU, P., AND G. LECOINTRE. 2002. When does the incongruence length difference test fail? Molecular Biology and Evolution 19: 432-437.
-
(2002)
Molecular Biology and Evolution
, vol.19
, pp. 432-437
-
-
DARLU, P.1
LECOINTRE, G.2
-
14
-
-
1842437489
-
-
DAVIS, J. I., D. W. STEVENSON, G. PETERSEN, O. SEBERG, L. M. CAMPBELL, J. V. FREUDENSTEIN, D. H. GOLDMAN, C. R. HARDY, F. A. MICHELANGELI, M. P. SIMMONS, C. D. SPECHT, F. VERGARA-SILVA, AND M. A. GANDOLFO. 2004. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values. Systematic Botany 29: 467-510.
-
DAVIS, J. I., D. W. STEVENSON, G. PETERSEN, O. SEBERG, L. M. CAMPBELL, J. V. FREUDENSTEIN, D. H. GOLDMAN, C. R. HARDY, F. A. MICHELANGELI, M. P. SIMMONS, C. D. SPECHT, F. VERGARA-SILVA, AND M. A. GANDOLFO. 2004. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values. Systematic Botany 29: 467-510.
-
-
-
-
15
-
-
0002265296
-
Seeking the dicot sister group of the monocots
-
K. L. Wilson and D. A. Morrison [eds, CSIRO Publishing, Collingwood, Victoria, Australia
-
DUVALL, M. R. 2000. Seeking the dicot sister group of the monocots. In K. L. Wilson and D. A. Morrison [eds.], Monocots: Systematics and evolution, 25-32. CSIRO Publishing, Collingwood, Victoria, Australia.
-
(2000)
Monocots: Systematics and evolution
, pp. 25-32
-
-
DUVALL, M.R.1
-
16
-
-
46349098094
-
-
DUVALL, M. R., M. T. CLEGG, M. W. CHASE, W. D. CLARK, W. J. KRESS, H. G. HILLS, L. E. EGUIARTE, J. F. SMITH, B. S. GAUT, E. A. ZIMMER, AND G. H. LEARN JR. 1993. Phylogenetic hypotheses for the monocotyledons constructed from rbcL sequence data. Annals of the Missouri Botanical Garden 80: 607-619.
-
DUVALL, M. R., M. T. CLEGG, M. W. CHASE, W. D. CLARK, W. J. KRESS, H. G. HILLS, L. E. EGUIARTE, J. F. SMITH, B. S. GAUT, E. A. ZIMMER, AND G. H. LEARN JR. 1993. Phylogenetic hypotheses for the monocotyledons constructed from rbcL sequence data. Annals of the Missouri Botanical Garden 80: 607-619.
-
-
-
-
17
-
-
0346463127
-
18S gene trees are positively misleading for monocot/dicot phylogenetics
-
DUVALL, M. R., AND A. ERVIN. 2004. 18S gene trees are positively misleading for monocot/dicot phylogenetics. Molecular Phylogenetics and Evolution 30: 97-106.
-
(2004)
Molecular Phylogenetics and Evolution
, vol.30
, pp. 97-106
-
-
DUVALL, M.R.1
ERVIN, A.2
-
18
-
-
34447648863
-
Placing the monocots; conflicting signal from trigenomic analyses
-
DUVALL, M. R., S. MATHEWS, N. MOHAMMAD, AND T. RUSSELL. 2006. Placing the monocots; conflicting signal from trigenomic analyses. Aliso 22: 77-88.
-
(2006)
Aliso
, vol.22
, pp. 77-88
-
-
DUVALL, M.R.1
MATHEWS, S.2
MOHAMMAD, N.3
RUSSELL, T.4
-
19
-
-
84983540175
-
The retention index and the rescaled consistency index
-
FARRIS, J. 1989. The retention index and the rescaled consistency index. Cladistics 5: 417-419.
-
(1989)
Cladistics
, vol.5
, pp. 417-419
-
-
FARRIS, J.1
-
20
-
-
84989432221
-
Testing significance of incongruence
-
FARRIS, J., M. KÄLLERSJÖ, A. KLUGE, AND C. BULT. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
-
(1994)
Cladistics
, vol.10
, pp. 315-319
-
-
FARRIS, J.1
KÄLLERSJÖ, M.2
KLUGE, A.3
BULT, C.4
-
21
-
-
84959848780
-
Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters
-
FELSENSTEIN, J. 1973. Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Systematic Zoology 22: 240-249.
-
(1973)
Systematic Zoology
, vol.22
, pp. 240-249
-
-
FELSENSTEIN, J.1
-
22
-
-
84959798530
-
Cases in which parsimony and compatibility methods will be positively misleading
-
FELSENSTEIN, J. 1978. Cases in which parsimony and compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
-
(1978)
Systematic Zoology
, vol.27
, pp. 401-410
-
-
FELSENSTEIN, J.1
-
25
-
-
0003706632
-
-
2nd ed. Sinauer, Sunderland, Massachusetts, USA
-
GRAUR, D., AND W.-H. LI. 2000. Fundamentals of molecular evolution, 2nd ed. Sinauer, Sunderland, Massachusetts, USA.
-
(2000)
Fundamentals of molecular evolution
-
-
GRAUR, D.1
LI, W.-H.2
-
26
-
-
33745120503
-
Seed plant phylogeny: Gnetophytes are derived conifers and a sister group to Pinaceae
-
HAJIBABAEI, M., J. XIA, AND G. DROUIN. 2006. Seed plant phylogeny: Gnetophytes are derived conifers and a sister group to Pinaceae. Molecular Phylogenetics and Evolution 40: 208-217.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 208-217
-
-
HAJIBABAEI, M.1
XIA, J.2
DROUIN, G.3
-
27
-
-
35148887716
-
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)
-
HANSEN, D., S. DASTIDAR, Z. CAI, C. PENAFLOR, J. KUEHL, J. BOORE, AND R. JANSEN. 2007. Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Molecular Phylogenetics and Evolution 45: 547-563.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.45
, pp. 547-563
-
-
HANSEN, D.1
DASTIDAR, S.2
CAI, Z.3
PENAFLOR, C.4
KUEHL, J.5
BOORE, J.6
JANSEN, R.7
-
28
-
-
0027979774
-
Plant mitochondrial nucleic acid sequences as a tool for phylogenetic analysis
-
HIESEL, R., A. VON HAESELER, AND A. BRENNICKE. 1994. Plant mitochondrial nucleic acid sequences as a tool for phylogenetic analysis. Proceedings of the National Academy of Sciences, USA 91: 634-638.
-
(1994)
Proceedings of the National Academy of Sciences, USA
, vol.91
, pp. 634-638
-
-
HIESEL, R.1
VON HAESELER, A.2
BRENNICKE, A.3
-
29
-
-
1642356002
-
Congruence versus phylogenetic accuracy: Revisiting the incongruence length difference test
-
HIPP, A., J. HALL, AND K. SYTSMA. 2004. Congruence versus phylogenetic accuracy: Revisiting the incongruence length difference test. Systematic Biology 53: 81-89.
-
(2004)
Systematic Biology
, vol.53
, pp. 81-89
-
-
HIPP, A.1
HALL, J.2
SYTSMA, K.3
-
30
-
-
0031084114
-
Is the Felsenstein zone a fly trap?
-
HUELSENBECK, J. P. 1997. Is the Felsenstein zone a fly trap? Systematic Biology 46: 69-74.
-
(1997)
Systematic Biology
, vol.46
, pp. 69-74
-
-
HUELSENBECK, J.P.1
-
32
-
-
0028818898
-
Creation of an initiation codon by RNA editing in the coxl transcript from tomato mitochondria
-
KADOWAKI, K., K. OZAWA, S. KAZAMA, N. KUBO, AND T. AKIHAMA. 1995. Creation of an initiation codon by RNA editing in the coxl transcript from tomato mitochondria. Current Genetics 28: 415-422.
-
(1995)
Current Genetics
, vol.28
, pp. 415-422
-
-
KADOWAKI, K.1
OZAWA, K.2
KAZAMA, S.3
KUBO, N.4
AKIHAMA, T.5
-
33
-
-
84959806898
-
A concern for evidence and a phylogenetic hypothesis for relationships among Epicrates (Boidae, Serpentes)
-
KLUGE, A. 1989. A concern for evidence and a phylogenetic hypothesis for relationships among Epicrates (Boidae, Serpentes). Systematic Zoology 38: 7-25.
-
(1989)
Systematic Zoology
, vol.38
, pp. 7-25
-
-
KLUGE, A.1
-
34
-
-
84963036271
-
Quantitative phyletics and the evolution of Anurans
-
KLUGE, A., AND J. FARRIS. 1969. Quantitative phyletics and the evolution of Anurans. Systematic Zoology 18: 1-32.
-
(1969)
Systematic Zoology
, vol.18
, pp. 1-32
-
-
KLUGE, A.1
FARRIS, J.2
-
35
-
-
0029248842
-
RNA editing of the mitochondrial atpA/atp9 co-transcript of Triticale, carrying the timopheevi cytoplasmic male sterility cytoplasm from wheat
-
LASER, B., G. OETTLER, AND U. KÜCK. 1995. RNA editing of the mitochondrial atpA/atp9 co-transcript of Triticale, carrying the timopheevi cytoplasmic male sterility cytoplasm from wheat. Plant Physiology 107: 663-664.
-
(1995)
Plant Physiology
, vol.107
, pp. 663-664
-
-
LASER, B.1
OETTLER, G.2
KÜCK, U.3
-
36
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
-
MOORE, M., C. BELL, P. SOLTIS, AND D. SOLTIS. 2007. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proceedings of the National Academy of Sciences, USA 104: 19363-19368.
-
(2007)
Proceedings of the National Academy of Sciences, USA
, vol.104
, pp. 19363-19368
-
-
MOORE, M.1
BELL, C.2
SOLTIS, P.3
SOLTIS, D.4
-
37
-
-
0034350373
-
Comparison of three methods for estimating internal support on phylogenetic trees
-
MORT, M. E., P. S. SOLTIS, D. E. SOLTIS, AND M. L. MABRY. 2000. Comparison of three methods for estimating internal support on phylogenetic trees. Systematic Biology 49: 160-171.
-
(2000)
Systematic Biology
, vol.49
, pp. 160-171
-
-
MORT, M.E.1
SOLTIS, P.S.2
SOLTIS, D.E.3
MABRY, M.L.4
-
38
-
-
25444502084
-
-
MOWER, J. 2005. PREP-Mt: Predictive RNA editor for plant mitochondrial genes. BMC Bioinformatics 6: 96 Website http:// www.biomedcentral.com/1471-2105/6/96.
-
MOWER, J. 2005. PREP-Mt: Predictive RNA editor for plant mitochondrial genes. BMC Bioinformatics 6: 96 Website http:// www.biomedcentral.com/1471-2105/6/96.
-
-
-
-
39
-
-
0033504552
-
The parsimony ratchet, a new method for rapid parsimony analysis
-
NIXON, K. C. 1999. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
-
(1999)
Cladistics
, vol.15
, pp. 407-414
-
-
NIXON, K.C.1
-
40
-
-
0026282569
-
Polymorphic taxa, missing values and cladistic analysis
-
NIXON, K. C., AND J. I. DAVIS. 1991. Polymorphic taxa, missing values and cladistic analysis. Cladistics 7: 233-241.
-
(1991)
Cladistics
, vol.7
, pp. 233-241
-
-
NIXON, K.C.1
DAVIS, J.I.2
-
41
-
-
0033576614
-
Multigene analyses identify the three earliest lineages of extant flowering plants
-
PARKINSON, C., K. ADAMS, AND J. D. PALMER. 1999. Multigene analyses identify the three earliest lineages of extant flowering plants. Current Biology 9: 1485-1488.
-
(1999)
Current Biology
, vol.9
, pp. 1485-1488
-
-
PARKINSON, C.1
ADAMS, K.2
PALMER, J.D.3
-
42
-
-
33846521604
-
Mitochondrial data in monocot phylogenetics
-
PETERSEN, G., O. SEBERG, J. I. DAVIS, D. H. GOLDMAN, D. W. STEVENSON, L. M. CAMPBELL, F. A. MICHELANGELI, C. D. SPECHT, M. W. CHASE, M. F. FAY, J. C. PIRES, J. V. FREUDENSTEIN, C. R. HARDY, AND M. P. SIMMONS. 2006a. Mitochondrial data in monocot phylogenetics. Aliso 22: 52-62.
-
(2006)
Aliso
, vol.22
, pp. 52-62
-
-
PETERSEN, G.1
SEBERG, O.2
DAVIS, J.I.3
GOLDMAN, D.H.4
STEVENSON, D.W.5
CAMPBELL, L.M.6
MICHELANGELI, F.A.7
SPECHT, C.D.8
CHASE, M.W.9
FAY, M.F.10
PIRES, J.C.11
FREUDENSTEIN, J.V.12
HARDY, C.R.13
SIMMONS, M.P.14
-
43
-
-
33846552402
-
RNA editing and phylogenetic reconstruction in two monocot mitochondrial genes
-
PETERSEN, G., O. SEBERG, J. I. DAVIS, AND D. W. STEVENSON. 2006b. RNA editing and phylogenetic reconstruction in two monocot mitochondrial genes. Taxon 55: 871-886.
-
(2006)
Taxon
, vol.55
, pp. 871-886
-
-
PETERSEN, G.1
SEBERG, O.2
DAVIS, J.I.3
STEVENSON, D.W.4
-
45
-
-
23944484422
-
-
QIU, Y.-L., O. DOMBROVSKA, J. LEE, L. LI, B. A. WHITLOCK, F. BERNASCONI-QUADRONI, J. S. REST, C. C. DAVIS, T. BORSCH, K. W. HILU, S. S. RENNER, D. E. SOLTIS, P. S. SOLTIS, M. J. ZANIS, J. J. CANNONE, R. R. GUTELL, M. POWELL, V. SAVOLAINEN, L. W. CHATROU, AND M. W. CHASE. 2005. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes. International Journal of Plant Sciences 166: 815-842.
-
QIU, Y.-L., O. DOMBROVSKA, J. LEE, L. LI, B. A. WHITLOCK, F. BERNASCONI-QUADRONI, J. S. REST, C. C. DAVIS, T. BORSCH, K. W. HILU, S. S. RENNER, D. E. SOLTIS, P. S. SOLTIS, M. J. ZANIS, J. J. CANNONE, R. R. GUTELL, M. POWELL, V. SAVOLAINEN, L. W. CHATROU, AND M. W. CHASE. 2005. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes. International Journal of Plant Sciences 166: 815-842.
-
-
-
-
46
-
-
0033677575
-
Phylogeny of basal angiosperms: Analyses of five genes from three genomes
-
QIU, Y.-L., J. LEE, F. BERNASCONI- QUADRONI, D. E. SOLTIS, P. S. SOLTIS, M. J. ZANIS, E. A. ZIMMER, Z. CHEN, V. SAVOLAINEN, AND M. W. CHASE. 2000. Phylogeny of basal angiosperms: Analyses of five genes from three genomes. International Journal of Plant Sciences 161: S3-S27.
-
(2000)
International Journal of Plant Sciences
, vol.161
-
-
QIU, Y.-L.1
LEE, J.2
BERNASCONI- QUADRONI, F.3
SOLTIS, D.E.4
SOLTIS, P.S.5
ZANIS, M.J.6
ZIMMER, E.A.7
CHEN, Z.8
SAVOLAINEN, V.9
CHASE, M.W.10
-
47
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
RAMBAUT, A., AND N. GRASSLY. 1997. Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Computer Applications in the Biosciences 13: 235-238.
-
(1997)
Computer Applications in the Biosciences
, vol.13
, pp. 235-238
-
-
RAMBAUT, A.1
GRASSLY, N.2
-
48
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
RONQUIST, F., AND J. HUELSENBECK. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19: 1572-1574.
-
(2003)
Bioinformatics (Oxford, England)
, vol.19
, pp. 1572-1574
-
-
RONQUIST, F.1
HUELSENBECK, J.2
-
50
-
-
0344861871
-
A decade of progress in plant molecular phylogenetics
-
SAVOLAINEN, V., AND M. W. CHASE. 2003. A decade of progress in plant molecular phylogenetics. Trends in Genetics 19: 717-724.
-
(2003)
Trends in Genetics
, vol.19
, pp. 717-724
-
-
SAVOLAINEN, V.1
CHASE, M.W.2
-
51
-
-
0025991268
-
Distribution of RNA editing sites in Oenothera mitochondrial mRNAs and rRNAs
-
SCHUSTER, W., R. TERNES, V. KNOOP, R. HIESEL, B. WISSINGER, AND A. BRENNICKE. 1991. Distribution of RNA editing sites in Oenothera mitochondrial mRNAs and rRNAs. Current Genetics 20: 397-404.
-
(1991)
Current Genetics
, vol.20
, pp. 397-404
-
-
SCHUSTER, W.1
TERNES, R.2
KNOOP, V.3
HIESEL, R.4
WISSINGER, B.5
BRENNICKE, A.6
-
52
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
SHIMODAIRA, H., AND M. HASEGAWA. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114-1116.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1114-1116
-
-
SHIMODAIRA, H.1
HASEGAWA, M.2
-
53
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
SHIMODAIRA, H., AND M. HASEGAWA. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology 51: 492-508.
-
(2002)
Systematic Biology
, vol.51
, pp. 492-508
-
-
SHIMODAIRA, H.1
HASEGAWA, M.2
-
55
-
-
0033604619
-
Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
-
SOLTIS, P. S., D. E. SOLTIS, AND M. W. CHASE. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402: 402-404.
-
(1999)
Nature
, vol.402
, pp. 402-404
-
-
SOLTIS, P.S.1
SOLTIS, D.E.2
CHASE, M.W.3
-
56
-
-
0033724755
-
Basal lineages of angiosperms: Relationships and implications for floral evolution
-
SOLTIS, P. S., D. E. SOLTIS, M. J. ZANIS, AND S. KIM. 2000. Basal lineages of angiosperms: Relationships and implications for floral evolution. International Journal of Plant Sciences 161 (6 Supplement): S97-S107.
-
(2000)
International Journal of Plant Sciences
, vol.161
, Issue.6 SUPPL.EMENT
-
-
SOLTIS, P.S.1
SOLTIS, D.E.2
ZANIS, M.J.3
KIM, S.4
-
57
-
-
46349083327
-
-
SWOFFORD, D. L. 2002. PAUP*: Phylogenetic analysis using parsimony *and other methods, version 4.0b10. Sinauer, Sunderland, Massachusetts, USA
-
SWOFFORD, D. L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, Massachusetts, USA.
-
-
-
-
58
-
-
0021084212
-
Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
-
TEMPLETON, A. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37: 221-244.
-
(1983)
Evolution
, vol.37
, pp. 221-244
-
-
TEMPLETON, A.1
-
59
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
THOMPSON, J., D. HIGGINS, AND T. GIBSON. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
THOMPSON, J.1
HIGGINS, D.2
GIBSON, T.3
-
60
-
-
0001616702
-
Age and biogeography of major clades in Liliales
-
VINNERSTEN, A., AND K. BREMER. 2001. Age and biogeography of major clades in Liliales. American Journal of Botany 88: 1695-1703.
-
(2001)
American Journal of Botany
, vol.88
, pp. 1695-1703
-
-
VINNERSTEN, A.1
BREMER, K.2
-
61
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
WOLFE, K. H., W.-H. LI, AND P. M. SHARP. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proceedings of the National Academy of Sciences, USA 84: 9054-9058.
-
(1987)
Proceedings of the National Academy of Sciences, USA
, vol.84
, pp. 9054-9058
-
-
WOLFE, K.H.1
LI, W.-H.2
SHARP, P.M.3
-
62
-
-
0030749810
-
Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method
-
YANG, Z., AND B. RANNALA. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Molecular Biology and Evolution 14: 717-724.
-
(1997)
Molecular Biology and Evolution
, vol.14
, pp. 717-724
-
-
YANG, Z.1
RANNALA, B.2
-
63
-
-
0035527350
-
Failure of the ILD to determine data combinability for slow loris phylogeny
-
YODER, A., J. IRWIN, AND B. PAYSEUR. 2001. Failure of the ILD to determine data combinability for slow loris phylogeny. Systematic Biology 50: 408-424.
-
(2001)
Systematic Biology
, vol.50
, pp. 408-424
-
-
YODER, A.1
IRWIN, J.2
PAYSEUR, B.3
-
64
-
-
0013058163
-
Phylogenetic analyses and perianth evolution in basal angiosperms
-
ZANIS, M. J., P. S. SOLTIS, Y.-L. QIU, E. A. ZIMMER, AND D. E. SOLTIS. 2003. Phylogenetic analyses and perianth evolution in basal angiosperms. Annals of the Missouri Botanical Garden 90: 129-150.
-
(2003)
Annals of the Missouri Botanical Garden
, vol.90
, pp. 129-150
-
-
ZANIS, M.J.1
SOLTIS, P.S.2
QIU, Y.-L.3
ZIMMER, E.A.4
SOLTIS, D.E.5
-
65
-
-
46349096309
-
-
ZWICKL, D. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, University of Texas at Austin, Austin, Texas, USA. GARLI version 0.951-1Website
-
ZWICKL, D. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, University of Texas at Austin, Austin, Texas, USA. GARLI version 0.951-1Website http://www.molecularevolution.org/mbl/ software/garli/.
-
-
-
|