-
1
-
-
0037179698
-
Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection
-
10.1056/NEJMoa020047 12324553
-
Fried MW Shiffman ML Reddy KR Smith C Marinos G Gonçales FL Jr Häussinger D Diago M Carosi G Dhumeaux D Craxi A Lin A Hoffman J Yu J Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection. N Engl J Med 2002, 347:975-982. 10.1056/NEJMoa020047 12324553
-
(2002)
N Engl J Med
, vol.347
, pp. 975-982
-
-
Fried, M.W.1
Shiffman, M.L.2
Reddy, K.R.3
Smith, C.4
Marinos, G.5
Gonçales Jr., F.L.6
Häussinger, D.7
Diago, M.8
Carosi, G.9
Dhumeaux, D.10
Craxi, A.11
Lin, A.12
Hoffman, J.13
Yu, J.14
-
2
-
-
1542378867
-
Peginterferon-alpha2a and ribavirin combination therapy in chronic hepatitis C: A randomized study of treatment duration and ribavirin dose
-
14996676
-
Hadziyannis SJ Sette H Jr Morgan TR Balan V Diago M Marcellin P Ramadori G Bodenheimer H Jr Bernstein D Rizzetto M Zeuzem S Pockros PJ Lin A Ackrill AM PEGASYS International Study Group Peginterferon-alpha2a and ribavirin combination therapy in chronic hepatitis C: A randomized study of treatment duration and ribavirin dose. Ann Intern Med 2004, 140:346-355. 14996676
-
(2004)
Ann Intern Med
, vol.140
, pp. 346-355
-
-
Hadziyannis, S.J.1
Sette Jr., H.2
Morgan, T.R.3
Balan, V.4
Diago, M.5
Marcellin, P.6
Ramadori, G.7
Bodenheimer Jr., H.8
Bernstein, D.9
Rizzetto, M.10
Zeuzem, S.11
Pockros, P.J.12
Lin, A.13
Ackrill, A.M.14
-
3
-
-
0035934568
-
Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: A randomised trial
-
10.1016/S0140-6736(01)06102-5 11583749
-
Manns MP McHutchison JG Gordon SC Rustgi VK Shiffman M Reindollar R Goodman ZD Koury K Ling M Albrecht JK Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: A randomised trial. Lancet 2001, 358:958-965. 10.1016/S0140-6736(01)06102-5 11583749
-
(2001)
Lancet
, vol.358
, pp. 958-965
-
-
Manns, M.P.1
McHutchison, J.G.2
Gordon, S.C.3
Rustgi, V.K.4
Shiffman, M.5
Reindollar, R.6
Goodman, Z.D.7
Koury, K.8
Ling, M.9
Albrecht, J.K.10
-
4
-
-
0035342440
-
Effect of naturally occurring active site mutations on hepatitis C virus NS3 protease specificity
-
10.1002/1097-0134(20010501)43:2<82::AID-PROT1020>3.0.CO;2-4 11276078
-
Beyer BM Zhang R Hong Z Madison V Malcolm BA Effect of naturally occurring active site mutations on hepatitis C virus NS3 protease specificity. Proteins 2001, 43:82-88. 10.1002/ 1097-0134(20010501)43:2<82::AID-PROT1020>3.0.CO;2-4 11276078
-
(2001)
Proteins
, vol.43
, pp. 82-88
-
-
Beyer, B.M.1
Zhang, R.2
Hong, Z.3
Madison, V.4
Malcolm, B.A.5
-
5
-
-
33646449468
-
Discovery of SCH446211 (SCH6): A new ketoamide inhibitor of the HCV NS3 serine protease and HCV subgenomic RNA replication
-
10.1021/jm060077j 16640336
-
Bogen SL Arasappan A Bennett F Chen K Jao E Liu YT Lovey RG Venkatraman S Pan W Parekh T Pike RE Ruan S Liu R Baroudy B Agrawal S Chase R Ingravallo P Pichardo J Prongay A Brisson J-M Hsieh TY Cheng K-C Kemp SJ Levy OE Lim-Wilby M Tamura SY Saksena AK Girijavallabhan V Njoroge FG Discovery of SCH446211 (SCH6): A new ketoamide inhibitor of the HCV NS3 serine protease and HCV subgenomic RNA replication. J Med Chem 2006, 49:2750-2757. 10.1021/jm060077j 16640336
-
(2006)
J Med Chem
, vol.49
, pp. 2750-2757
-
-
Bogen, S.L.1
Arasappan, A.2
Bennett, F.3
Chen, K.4
Jao, E.5
Liu, Y.T.6
Lovey, R.G.7
Venkatraman, S.8
Pan, W.9
Parekh, T.10
Pike, R.E.11
Ruan, S.12
Liu, R.13
Baroudy, B.14
Agrawal, S.15
Chase, R.16
Ingravallo, P.17
Pichardo, J.18
Prongay, A.19
Brisson, J.-M.20
Hsieh, T.Y.21
Cheng, K.-C.22
Kemp, S.J.23
Levy, O.E.24
Lim-Wilby, M.25
Tamura, S.Y.26
Saksena, A.K.27
Girijavallabhan, V.28
Njoroge, F.G.29
more..
-
6
-
-
0344201903
-
An NS3 protease inhibitor with antiviral effects in humans infected with hepatitis C virus
-
10.1038/nature02099 14578911
-
Lamarre D Anderson PC Bailey M Beaulieu P Bolger G Bonneau P Bos M Cameron DR Cartier M Cordingley MG Faucher A-M Goudreau N Kawai SH Kukolj G Lagacé L LaPlante SR Narjes H Poupart M-A Rancourt J Sentjens RE St George R Simoneau B Steinmann G Thibeault D Tsantrizos YS Weldon SM Yong C-L Llinàs-Brunet M An NS3 protease inhibitor with antiviral effects in humans infected with hepatitis C virus. Nature 2003, 426:186-189. 10.1038/nature02099 14578911
-
(2003)
Nature
, vol.426
, pp. 186-189
-
-
Lamarre, D.1
Anderson, P.C.2
Bailey, M.3
Beaulieu, P.4
Bolger, G.5
Bonneau, P.6
Bos, M.7
Cameron, D.R.8
Cartier, M.9
Cordingley, M.G.10
Faucher, A.-M.11
Goudreau, N.12
Kawai, S.H.13
Kukolj, G.14
Lagacé, L.15
LaPlante, S.R.16
Narjes, H.17
Poupart, M.-A.18
Rancourt, J.19
Sentjens, R.E.20
St. George, R.21
Simoneau, B.22
Steinmann, G.23
Thibeault, D.24
Tsantrizos, Y.S.25
Weldon, S.M.26
Yong, C.-L.27
Llinàs-Brunet, M.28
more..
-
7
-
-
33744457959
-
Discovery and development of VX-950, a novel, covalent, and reversible inhibitor of hepatitis C virus NS3.4A serine protease
-
16787300
-
Lin C Kwong AD Perni RB Discovery and development of VX-950, a novel, covalent, and reversible inhibitor of hepatitis C virus NS3.4A serine protease. Infect Disord Drug Targets 2006, 6:3-16. 16787300
-
(2006)
Infect Disord Drug Targets
, vol.6
, pp. 3-16
-
-
Lin, C.1
Kwong, A.D.2
Perni, R.B.3
-
8
-
-
33644639990
-
SCH 50 a mechanism-based inhibitor of hepatitis C virus NS3 protease, suppresses polyprotein maturation and enhances the antiviral activity of alpha interferon in replicon cells
-
10.1128/AAC.50.3.1013-1020.2006
-
Malcolm BA Liu R Lahser F Agrawal S Belanger B Butkiewicz N Chase R Gheyas F Hart A Hesk D Ingravallo P Jiang C Kong R Lu J Pichardo J Prongay A Skelton A Tong X Venkatraman S Xia E Girijavallabhan V Njoroge FG SCH 50 a mechanism-based inhibitor of hepatitis C virus NS3 protease, suppresses polyprotein maturation and enhances the antiviral activity of alpha interferon in replicon cells. Antimicrob Agents Chemother 3034, 50:1013-1020. 10.1128/AAC.50.3.1013-1020.2006
-
(3034)
Antimicrob Agents Chemother
, vol.50
, pp. 1013-1020
-
-
Malcolm, B.A.1
Liu, R.2
Lahser, F.3
Agrawal, S.4
Belanger, B.5
Butkiewicz, N.6
Chase, R.7
Gheyas, F.8
Hart, A.9
Hesk, D.10
Ingravallo, P.11
Jiang, C.12
Kong, R.13
Lu, J.14
Pichardo, J.15
Prongay, A.16
Skelton, A.17
Tong, X.18
Venkatraman, S.19
Xia, E.20
Girijavallabhan, V.21
Njoroge, F.G.22
more..
-
9
-
-
0033522886
-
The solution structure of the N-terminal proteinase domain of the hepatitis C virus (HCV) NS3 protein provides new insights into its activation and catalytic mechanism
-
10.1006/jmbi.1999.2745 10.1006/jmbi.1999.2745 10366511
-
Barbato G Cicero DO Nardi MC Steinkuhler C Cortese R De Francesco R Bazzo R The solution structure of the N-terminal proteinase domain of the hepatitis C virus (HCV) NS3 protein provides new insights into its activation and catalytic mechanism. J Mol Biol 1999, 289:371-384. 10.1006/jmbi.1999.2745 10366511
-
(1999)
J Mol Biol
, vol.289
, pp. 371-384
-
-
Barbato, G.1
Cicero, D.O.2
Nardi, M.C.3
Steinkuhler, C.4
Cortese, R.5
De Francesco, R.6
Bazzo, R.7
-
10
-
-
0035793211
-
Solution structure and dynamics of the single-chain hepatitis C virus NS3 protease NS4A cofactor complex
-
10.1006/jmbi.2000.4365 11162117
-
McCoy MA Senior MM Gesell JJ Ramanathan L Wyss DF Solution structure and dynamics of the single-chain hepatitis C virus NS3 protease NS4A cofactor complex. J Mol Biol 2001, 305:1099-1110. 10.1006/jmbi.2000.4365 11162117
-
(2001)
J Mol Biol
, vol.305
, pp. 1099-1110
-
-
McCoy, M.A.1
Senior, M.M.2
Gesell, J.J.3
Ramanathan, L.4
Wyss, D.F.5
-
11
-
-
2642590958
-
Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: A 2.2 A resolution structure in a hexagonal crystal form
-
2143993 9568891
-
Yan Y Li Y Munshi S Sardana V Cole JL Sardana M Steinkuehler C Tomei L De Francesco R Kuo LC Chen Z Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: A 2.2 A resolution structure in a hexagonal crystal form. Protein Sci 1998, 7:837-847. 2143993 9568891
-
(1998)
Protein Sci
, vol.7
, pp. 837-847
-
-
Yan, Y.1
Li, Y.2
Munshi, S.3
Sardana, V.4
Cole, J.L.5
Sardana, M.6
Steinkuehler, C.7
Tomei, L.8
De Francesco, R.9
Kuo, L.C.10
Chen, Z.11
-
12
-
-
0034629363
-
Inhibition of the hepatitis C virus NS3/4A protease. The crystal structures of two protease-inhibitor complexes
-
10.1074/jbc.275.10.7152 10702283
-
Di Marco S Rizzi M Volpari C Walsh MA Narjes F Colarusso S De Francesco R Matassa VG Sollazzo M Inhibition of the hepatitis C virus NS3/4A protease. The crystal structures of two protease-inhibitor complexes. J Biol Chem 2000, 275:7152-7157. 10.1074/jbc.275.10.7152 10702283
-
(2000)
J Biol Chem
, vol.275
, pp. 7152-7157
-
-
Di Marco, S.1
Rizzi, M.2
Volpari, C.3
Walsh, M.A.4
Narjes, F.5
Colarusso, S.6
De Francesco, R.7
Matassa, V.G.8
Sollazzo, M.9
-
15
-
-
0034940307
-
Hepatitis C virus protease inhibitors: Current progress and future challenges
-
11375758
-
Steinkuhler C Koch U Narjes F Matassa VG Hepatitis C virus protease inhibitors: Current progress and future challenges. Curr Med Chem 2001, 8:919-932. 11375758
-
(2001)
Curr Med Chem
, vol.8
, pp. 919-932
-
-
Steinkuhler, C.1
Koch, U.2
Narjes, F.3
Matassa, V.G.4
-
16
-
-
33744723134
-
Viral kinetics in patients with chronic hepatitis C treated with the serine protease inhibitor BILN 2061
-
16759054
-
Herrmann E Zeuzem S Sarrazin C Hinrichsen H Benhamou Y Manns MP Reiser M Reesink H Calleja JL Forns X Steinmann GG Nehmiz G Viral kinetics in patients with chronic hepatitis C treated with the serine protease inhibitor BILN 2061. Antivir Ther 2006, 11:371-376. 16759054
-
(2006)
Antivir Ther
, vol.11
, pp. 371-376
-
-
Herrmann, E.1
Zeuzem, S.2
Sarrazin, C.3
Hinrichsen, H.4
Benhamou, Y.5
Manns, M.P.6
Reiser, M.7
Reesink, H.8
Calleja, J.L.9
Forns, X.10
Steinmann, G.G.11
Nehmiz, G.12
-
17
-
-
7644232426
-
Short-term antiviral efficacy of BILN a hepatitis C virus serine protease inhibitor, in hepatitis C genotype 1 patients
-
10.1053/j.gastro.2004.08.002
-
Hinrichsen H Benhamou Y Wedemeyer H Reiser M Sentjens RE Calleja JL Forns X Erhardt A Cronlein J Chaves RL Yong CL Nehmiz G Steinmann GG Short-term antiviral efficacy of BILN a hepatitis C virus serine protease inhibitor, in hepatitis C genotype 1 patients. Gastroenterology 2061, 127:1347-1355. 10.1053/j.gastro.2004.08.002
-
(2061)
Gastroenterology
, vol.127
, pp. 1347-1355
-
-
Hinrichsen, H.1
Benhamou, Y.2
Wedemeyer, H.3
Reiser, M.4
Sentjens, R.E.5
Calleja, J.L.6
Forns, X.7
Erhardt, A.8
Cronlein, J.9
Chaves, R.L.10
Yong, C.L.11
Nehmiz, G.12
Steinmann, G.G.13
-
18
-
-
33749360242
-
Rapid decline of viral RNA in hepatitis C patients treated with VX-950: A phase Ib, placebo-controlled, randomized study
-
10.1053/j.gastro.2006.07.013 17030169
-
Reesink HW Zeuzem S Weegink CJ Forestier N van Vliet A van de Wetering de Rooij J McNair L Purdy S Kauffman R Alam J Jansen PL Rapid decline of viral RNA in hepatitis C patients treated with VX-950: A phase Ib, placebo-controlled, randomized study. Gastroenterology 2006, 131:997-1002. 10.1053/j.gastro.2006.07.013 17030169
-
(2006)
Gastroenterology
, vol.131
, pp. 997-1002
-
-
Reesink, H.W.1
Zeuzem, S.2
Weegink, C.J.3
Forestier, N.4
van Vliet, A.5
van de Wetering de Rooij, J.6
McNair, L.7
Purdy, S.8
Kauffman, R.9
Alam, J.10
Jansen, P.L.11
-
19
-
-
34247594930
-
Dynamic hepatitis C virus genotypic and phenotypic changes in patients treated with the protease inhibitor telaprevir
-
10.1053/j.gastro.2007.02.037 17484874
-
Sarrazin C Kieffer TL Bartels D Hanzelka B Muh U Welker M Wincheringer D Zhou Y Chu HM Lin C Weegink C Reesink H Zeuzem S Kwong AD Dynamic hepatitis C virus genotypic and phenotypic changes in patients treated with the protease inhibitor telaprevir. Gastroenterology 2007, 132:1767-1777. 10.1053/j.gastro.2007.02.037 17484874
-
(2007)
Gastroenterology
, vol.132
, pp. 1767-1777
-
-
Sarrazin, C.1
Kieffer, T.L.2
Bartels, D.3
Hanzelka, B.4
Muh, U.5
Welker, M.6
Wincheringer, D.7
Zhou, Y.8
Chu, H.M.9
Lin, C.10
Weegink, C.11
Reesink, H.12
Zeuzem, S.13
Kwong, A.D.14
-
20
-
-
34547927078
-
Phenotypic and structural analyses of HCV NS3 protease ARG155 variants: Sensitivity to telaprevir (VX-950) and interferon alpha
-
10.1074/jbc.M610207200 17556358
-
Zhou Y Muh U Hanzelka BL Bartels DJ Wei Y Rao BG Brennan DL Tigges AM Swenson L Kwong AD Lin C Phenotypic and structural analyses of HCV NS3 protease ARG155 variants: Sensitivity to telaprevir (VX-950) and interferon alpha. J Biol Chem 2007, 282:22619-22628. 10.1074/ jbc.M610207200 17556358
-
(2007)
J Biol Chem
, vol.282
, pp. 22619-22628
-
-
Zhou, Y.1
Muh, U.2
Hanzelka, B.L.3
Bartels, D.J.4
Wei, Y.5
Rao, B.G.6
Brennan, D.L.7
Tigges, A.M.8
Swenson, L.9
Kwong, A.D.10
Lin, C.11
-
21
-
-
34247205808
-
SCH 503034, a novel hepatitis C virus protease inhibitor, plus pegylated interferon alpha-2b for genotype 1 nonresponders
-
10.1053/j.gastro.2007.01.041 17408662
-
Sarrazin C Rouzier R Wagner F Forestier N Larrey D Gupta SK Hussain M Shah A Cutler D Zhang J Zeuzem S SCH 503034, a novel hepatitis C virus protease inhibitor, plus pegylated interferon alpha-2b for genotype 1 nonresponders. Gastroenterology 2007, 132:1270-1278. 10.1053/ j.gastro.2007.01.041 17408662
-
(2007)
Gastroenterology
, vol.132
, pp. 1270-1278
-
-
Sarrazin, C.1
Rouzier, R.2
Wagner, F.3
Forestier, N.4
Larrey, D.5
Gupta, S.K.6
Hussain, M.7
Shah, A.8
Cutler, D.9
Zhang, J.10
Zeuzem, S.11
-
22
-
-
33646036163
-
Identification and analysis of fitness of resistance mutations against the HCV protease inhibitor SCH 503034
-
10.1016/j.antiviral.2005.12.003 16448708
-
Tong X Chase R Skelton A Chen T Wright-Minogue J Malcolm BA Identification and analysis of fitness of resistance mutations against the HCV protease inhibitor SCH 503034. Antiviral Res 2006, 70:28-38. 10.1016/j.antiviral.2005.12.003 16448708
-
(2006)
Antiviral Res
, vol.70
, pp. 28-38
-
-
Tong, X.1
Chase, R.2
Skelton, A.3
Chen, T.4
Wright-Minogue, J.5
Malcolm, B.A.6
-
23
-
-
0347809950
-
Inhibitors of hepatitis C virus NS3.4A protease 1. Non-charged tetrapeptide variants
-
10.1016/j.bmcl.2003.08.050 14592508
-
Perni RB Britt SD Court JC Courtney LF Deininger DD Farmer LJ Gates CA Harbeson SL Kim JL Landro JA Levin RB Luong Y-P O'Malley ET Pitlik J Govinda Rao B Schairer WC Thomson JA Tung RD Van Drie JH Wei Y Inhibitors of hepatitis C virus NS3.4A protease 1. Non-charged tetrapeptide variants. Bioorg Med Chem Lett 2003, 13:4059-4063. 10.1016/ j.bmcl.2003.08.050 14592508
-
(2003)
Bioorg Med Chem Lett
, vol.13
, pp. 4059-4063
-
-
Perni, R.B.1
Britt, S.D.2
Court, J.C.3
Courtney, L.F.4
Deininger, D.D.5
Farmer, L.J.6
Gates, C.A.7
Harbeson, S.L.8
Kim, J.L.9
Landro, J.A.10
Levin, R.B.11
Luong, Y.-P.12
O'Malley, E.T.13
Pitlik, J.14
Govinda Rao, B.15
Schairer, W.C.16
Thomson, J.A.17
Tung, R.D.18
Van Drie, J.H.19
Wei, Y.20
more..
-
24
-
-
12144286493
-
Inhibitors of hepatitis C virus NS3.4A protease. Part 3: P2 proline variants
-
10.1016/j.bmcl.2004.01.078 15050632
-
Perni RB Farmer LJ Cottrell KM Court JJ Courtney LF Deininger DD Gates CA Harbeson SL Kim JL Lin C Lin K Luong YP Maxwell JP Murcko MA Pitlik J Rao BG Schairer WC Tung RD Van Drie JH Wilson K Thomson JA Inhibitors of hepatitis C virus NS3.4A protease. Part 3: P2 proline variants. Bioorg Med Chem Lett 2004, 14:1939-1942. 10.1016/j.bmcl.2004.01.078 15050632
-
(2004)
Bioorg Med Chem Lett
, vol.14
, pp. 1939-1942
-
-
Perni, R.B.1
Farmer, L.J.2
Cottrell, K.M.3
Court, J.J.4
Courtney, L.F.5
Deininger, D.D.6
Gates, C.A.7
Harbeson, S.L.8
Kim, J.L.9
Lin, C.10
Lin, K.11
Luong, Y.P.12
Maxwell, J.P.13
Murcko, M.A.14
Pitlik, J.15
Rao, B.G.16
Schairer, W.C.17
Tung, R.D.18
Van Drie, J.H.19
Wilson, K.20
Thomson, J.A.21
more..
-
25
-
-
10744231857
-
Inhibitors of hepatitis C virus NS3.4A protease 2. Warhead SAR and optimization
-
10.1016/j.bmcl.2004.01.022 15006379
-
Perni RB Pitlik J Britt SD Court JJ Courtney LF Deininger DD Farmer LJ Gates CA Harbeson SL Levin RB Lin C Lin K Moon Y-C Luong Y-P O'Malley ET Govinda Rao B Thomson JA Tung RD Van Drie JH Wei Y Inhibitors of hepatitis C virus NS3.4A protease 2. Warhead SAR and optimization. Bioorg Med Chem Lett 2004, 14:1441-1446. 10.1016/j.bmcl.2004.01.022 15006379
-
(2004)
Bioorg Med Chem Lett
, vol.14
, pp. 1441-1446
-
-
Perni, R.B.1
Pitlik, J.2
Britt, S.D.3
Court, J.J.4
Courtney, L.F.5
Deininger, D.D.6
Farmer, L.J.7
Gates, C.A.8
Harbeson, S.L.9
Levin, R.B.10
Lin, C.11
Lin, K.12
Moon, Y.-C.13
Luong, Y.-P.14
O'Malley, E.T.15
Govinda Rao, B.16
Thomson, J.A.17
Tung, R.D.18
Van Drie, J.H.19
Wei, Y.20
more..
-
26
-
-
33847676669
-
Combination of telaprevir (VX-950) and PEG-IFN-alfa suppresses both wild-type virus and resistance variants in HCV genotype 1-infected patients in a 14-day phase Ib study
-
Kieffer TL Sarrazin C Miller J Traver S Zhou Y Bartels D Hanzelka B Muh U Lin C Reesink H Kwong A Zeuzem S Combination of telaprevir (VX-950) and PEG-IFN-alfa suppresses both wild-type virus and resistance variants in HCV genotype 1-infected patients in a 14-day phase Ib study. Hepatology 2006, 44:222A-223A.
-
(2006)
Hepatology
, vol.44
-
-
Kieffer, T.L.1
Sarrazin, C.2
Miller, J.3
Traver, S.4
Zhou, Y.5
Bartels, D.6
Hanzelka, B.7
Muh, U.8
Lin, C.9
Reesink, H.10
Kwong, A.11
Zeuzem, S.12
-
27
-
-
36248984345
-
Telaprevir (VX-950)-resistant variants exhibit reduced replication capacity compared to wild-type HCV in vivo and in vitro
-
10.1016/S0168-8278(07)62207-7
-
Chu HM Zhou Y Bartels DJ Khunvichai A Rao BG Kwong AD Lin C Telaprevir (VX-950)-resistant variants exhibit reduced replication capacity compared to wild-type HCV in vivo and in vitro. J Hepatol 2007, 46:S230-S231. 10.1016/S0168-8278(07)62207-7
-
(2007)
J Hepatol
, vol.46
-
-
Chu, H.M.1
Zhou, Y.2
Bartels, D.J.3
Khunvichai, A.4
Rao, B.G.5
Kwong, A.D.6
Lin, C.7
-
28
-
-
33847643529
-
In vitro characterization of telaprevir (VX-950) NS3 protease variants
-
Zhou Y Muh U Bartels D Hanzelka B Rao G Kieffer TL Kwong AD Lin C In vitro characterization of telaprevir (VX-950) NS3 protease variants. Hepatology 2006, 44:221A.
-
(2006)
Hepatology
, vol.44
-
-
Zhou, Y.1
Muh, U.2
Bartels, D.3
Hanzelka, B.4
Rao, G.5
Kieffer, T.L.6
Kwong, A.D.7
Lin, C.8
-
29
-
-
32044439087
-
Novel inhibitors of hepatitis C NS3-NS4A serine protease derived from 2-aza-bicyclo[2.2.1]heptane-3-carboxylic acid
-
10.1016/j.bmcl.2005.12.046 16413182
-
Venkatraman S Njoroge FG Wu W Girijavallabhan V Prongay AJ Butkiewicz N Pichardo J Novel inhibitors of hepatitis C NS3-NS4A serine protease derived from 2-aza-bicyclo[2.2.1]heptane-3-carboxylic acid. Bioorg Med Chem Lett 2006, 16:1628-1632. 10.1016/j.bmcl.2005.12.046 16413182
-
(2006)
Bioorg Med Chem Lett
, vol.16
, pp. 1628-1632
-
-
Venkatraman, S.1
Njoroge, F.G.2
Wu, W.3
Girijavallabhan, V.4
Prongay, A.J.5
Butkiewicz, N.6
Pichardo, J.7
-
30
-
-
33646369669
-
Mutations conferring resistance to SCH6, a novel hepatitis C virus NS3/ 4A protease inhibitor. Reduced RNA replication fitness and partial rescue by second-site mutations
-
10.1074/jbc.M510246200 16352601
-
Yi M Tong X Skelton A Chase R Chen T Prongay A Bogen SL Saksena AK Njoroge FG Veselenak RL Pyles RB Bourne N Malcolm BA Lemon SM Mutations conferring resistance to SCH6, a novel hepatitis C virus NS3/4A protease inhibitor. Reduced RNA replication fitness and partial rescue by second-site mutations. J Biol Chem 2006, 281:8205-8215. 10.1074/ jbc.M510246200 16352601
-
(2006)
J Biol Chem
, vol.281
, pp. 8205-8215
-
-
Yi, M.1
Tong, X.2
Skelton, A.3
Chase, R.4
Chen, T.5
Prongay, A.6
Bogen, S.L.7
Saksena, A.K.8
Njoroge, F.G.9
Veselenak, R.L.10
Pyles, R.B.11
Bourne, N.12
Malcolm, B.A.13
Lemon, S.M.14
-
31
-
-
33750981540
-
Do structurally similar ligands bind in a similar fashion?
-
10.1021/jm060167o 17154502
-
Bostrom J Hogner A Schmitt S Do structurally similar ligands bind in a similar fashion? J Med Chem 2006, 49:6716-6725. 10.1021/jm060167o 17154502
-
(2006)
J Med Chem
, vol.49
, pp. 6716-6725
-
-
Bostrom, J.1
Hogner, A.2
Schmitt, S.3
-
32
-
-
10744225987
-
Pyrrolidine-5,5-trans-lactams. 4. Incorporation of a P3/P4 urea leads to potent intracellular inhibitors of hepatitis C virus NS3/4A protease
-
10.1021/ol035826v 14627400
-
Slater MJ Amphlett EM Andrews DM Bamborough P Carey SJ Johnson MR Jones PS Mills G Parry NR Somers DO Stewart AJ Skarzynski T Pyrrolidine-5,5-trans-lactams. 4. Incorporation of a P3/P4 urea leads to potent intracellular inhibitors of hepatitis C virus NS3/4A protease. Org Lett 2003, 5:4627-4630. 10.1021/ol035826v 14627400
-
(2003)
Org Lett
, vol.5
, pp. 4627-4630
-
-
Slater, M.J.1
Amphlett, E.M.2
Andrews, D.M.3
Bamborough, P.4
Carey, S.J.5
Johnson, M.R.6
Jones, P.S.7
Mills, G.8
Parry, N.R.9
Somers, D.O.10
Stewart, A.J.11
Skarzynski, T.12
-
33
-
-
34250792960
-
IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models
-
10.1110/ps.062658307 17567749
-
Hartmann C Antes I Lengauer T IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models. Protein Sci 2007, 16:1294-1307. 10.1110/ps.062658307 17567749
-
(2007)
Protein Sci
, vol.16
, pp. 1294-1307
-
-
Hartmann, C.1
Antes, I.2
Lengauer, T.3
-
34
-
-
25844523297
-
Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes
-
10.1002/hep.20819 16149085
-
Simmonds P Bukh J Combet C Deléage G Enomoto N Feinstone S Halfon P Inchauspé G Kuiken C Maertens G Mizokami M Murphy DG Okamoto H Pawlotsky JM Penin F Sablon E Shin-I T Stuyver LJ Thiel HJ Viazov S Weiner AJ Widell A Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes. Hepatology 2005, 42:962-973. 10.1002/hep.20819 16149085
-
(2005)
Hepatology
, vol.42
, pp. 962-973
-
-
Simmonds, P.1
Bukh, J.2
Combet, C.3
Deléage, G.4
Enomoto, N.5
Feinstone, S.6
Halfon, P.7
Inchauspé, G.8
Kuiken, C.9
Maertens, G.10
Mizokami, M.11
Murphy, D.G.12
Okamoto, H.13
Pawlotsky, J.M.14
Penin, F.15
Sablon, E.16
Shin-I, T.17
Stuyver, L.J.18
Thiel, H.J.19
Viazov, S.20
Weiner, A.J.21
Widell, A.22
more..
-
35
-
-
36549054018
-
Conformational analysis of alternative protein structures
-
10.1093/bioinformatics/btm499 17933849
-
Domingues FS Rahnenführer J Lengauer T Conformational analysis of alternative protein structures. Bioinformatics 2007, 23:3131-3138. 10.1093/bioinformatics/btm499 17933849
-
(2007)
Bioinformatics
, vol.23
, pp. 3131-3138
-
-
Domingues, F.S.1
Rahnenführer, J.2
Lengauer, T.3
-
36
-
-
46249098712
-
-
PyMOL http://pymol.sourceforge.net/
-
PyMOL
-
-
-
37
-
-
46249120888
-
-
Chimera http://www.cgl.ucsf.edu/chimera/
-
Chimera
-
-
-
38
-
-
0035966871
-
Detailed analysis of scoring functions for virtual screening
-
10.1021/jm0003992 11297450
-
Stahl M Rarey M Detailed analysis of scoring functions for virtual screening. J Med Chem 2001, 44:1035-1042. 10.1021/jm0003992 11297450
-
(2001)
J Med Chem
, vol.44
, pp. 1035-1042
-
-
Stahl, M.1
Rarey, M.2
-
39
-
-
0030599010
-
A fast flexible docking method using an incremental construction algorithm
-
10.1006/jmbi.1996.0477 8780787
-
Rarey M Kramer B Lengauer T Klebe G A fast flexible docking method using an incremental construction algorithm. J Mol Biol 1996, 261:470-489. 10.1006/jmbi.1996.0477 8780787
-
(1996)
J Mol Biol
, vol.261
, pp. 470-489
-
-
Rarey, M.1
Kramer, B.2
Lengauer, T.3
Klebe, G.4
-
40
-
-
35748964777
-
-
MDL ISIS/Draw http://www.mdl.com/products/framework/isis_draw/index.jsp
-
MDL ISIS/Draw
-
-
-
42
-
-
0030442990
-
Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures
-
10.1002/(SICI)1097-0134(199612)26:4<363::AID-PROT1>3.0.CO;2-D 8990493
-
Hooft RW Sander C Vriend G Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures. Proteins 1996 26 363 376 10.1002/(SICI)1097-0134(199612)26:4<363::AID-PROT1>3.0.CO;2-D 8990493
-
(1996)
Proteins
, vol.26
, pp. 363-376
-
-
Hooft, R.W.1
Sander, C.2
Vriend, G.3
-
44
-
-
46249101993
-
-
Cytoscape http://www.cytoscape.org/
-
Cytoscape
-
-
-
45
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
10.1093/protein/8.2.127 7630882
-
Wallace AC Laskowski RA Thornton JM LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng 1995, 8:127-134. 10.1093/protein/8.2.127 7630882
-
(1995)
Protein Eng
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
46
-
-
38349164409
-
Computing topological parameters of biological networks
-
10.1093/bioinformatics/btm554 18006545
-
Assenov Y Ramirez F Schelhorn SE Lengauer T Albrecht M Computing topological parameters of biological networks. Bioinformatics 2008, 24:282-284. 10.1093/bioinformatics/btm554 18006545
-
(2008)
Bioinformatics
, vol.24
, pp. 282-284
-
-
Assenov, Y.1
Ramirez, F.2
Schelhorn, S.E.3
Lengauer, T.4
Albrecht, M.5
-
47
-
-
46249120589
-
-
NetworkAnalyzer http://med.bioinf.mpi-inf.mpg.de/networkanalyzer/
-
NetworkAnalyzer
-
-
-
48
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E Hess B van der Spoel D GROMACS 3.0: A package for molecular simulation and trajectory analysis. J Mol Mod 2001, 7:306-317.
-
(2001)
J Mol Mod
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
49
-
-
0008819754
-
The GROMOS biomolecular simulation program package
-
10.1021/jp984217f
-
Scott WRP Hunenberger PH Tironi IG Mark AE Billeter SR Fennen J Torda AE Huber T Krüger P van Gunsteren WF The GROMOS biomolecular simulation program package. J Phys Chem A 1999, 103:3596-3607. 10.1021/ jp984217f
-
(1999)
J Phys Chem A
, vol.103
, pp. 3596-3607
-
-
Scott, W.R.P.1
Hunenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Krüger, P.9
van Gunsteren, W.F.10
-
50
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H
-
Hess B Bekker H Berendsen HJC Fraaije JGEM LINCS: A linear constraint solver for molecular simulations. J Comput Chem 1997, 18:1463-1472. 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H
-
(1997)
J Comput Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
52
-
-
0029878720
-
VMD: Visual molecular dynamics
-
10.1016/0263-7855(96)00018-5 8744570
-
Humphrey W Dalke A Schulten K VMD: Visual molecular dynamics. J Mol Graph 1996, 14:33- 38. 10.1016/0263-7855(96)00018-5 8744570
-
(1996)
J Mol Graph
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
53
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
1347523 16381842 10.1093/nar/gkj161
-
Wu CH Apweiler R Bairoch A Natale DA Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Mazumder R O'Donovan C Redaschi N Suzek B The Universal Protein Resource (UniProt): An expanding universe of protein information. Nucleic Acids Res 2006, 34:D187-191. 1347523 16381842 10.1093/nar/gkj161
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
Ferro, S.7
Gasteiger, E.8
Huang, H.9
Lopez, R.10
Magrane, M.11
Martin, M.J.12
Mazumder, R.13
O'Donovan, C.14
Redaschi, N.15
Suzek, B.16
-
55
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
390337 15034147 10.1093/nar/gkh340
-
Edgar RC MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 390337 15034147 10.1093/nar/gkh340
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
56
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
9021275
-
Galtier N Gouy M Gautier C SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 1996, 12:543-548. 9021275
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
57
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
10.1002/bip.360221211 6667333
-
Kabsch W Sander C Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983, 22:2577-2637. 10.1002/bip.360221211 6667333
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
59
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 146917 9254694 10.1093/ nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
60
-
-
0035032237
-
Enhancement of hepatitis C virus RNA replication by cell culture-adaptive mutations
-
114214 11312331 10.1128/JVI.75.10.4614-4624.2001
-
Krieger N Lohmann V Bartenschlager R Enhancement of hepatitis C virus RNA replication by cell culture-adaptive mutations. J Virol 2001, 75:4614-4624. 114214 11312331 10.1128/JVI.75.10.4614-4624.2001
-
(2001)
J Virol
, vol.75
, pp. 4614-4624
-
-
Krieger, N.1
Lohmann, V.2
Bartenschlager, R.3
-
61
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
10.1016/S0006-291X(67)80055-X 6035483
-
Schechter I Berger A On the size of the active site in proteases. I. Papain. Biochem Biophys Res Commun 1967, 27:157-162. 10.1016/ S0006-291X(67)80055-X 6035483
-
(1967)
Biochem Biophys Res Commun
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
|