-
1
-
-
14744277777
-
Polyploidy and genome evolution in plants
-
ADAMS, K. L., and J. F. WENDEL, 2005 Polyploidy and genome evolution in plants. Curr. Opin. Plant Biol. 8: 135-141.
-
(2005)
Curr. Opin. Plant Biol
, vol.8
, pp. 135-141
-
-
ADAMS, K.L.1
WENDEL, J.F.2
-
2
-
-
0345071423
-
Genes duplicated by polyploidy show unequal contributions to the tran-scriptome and organ-specific reciprocal silencing
-
ADAMS, K. L., R. CRONN, R. PERCIFIELD and J. F. WENDEL, 2003 Genes duplicated by polyploidy show unequal contributions to the tran-scriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. USA 100: 4649-4654.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 4649-4654
-
-
ADAMS, K.L.1
CRONN, R.2
PERCIFIELD, R.3
WENDEL, J.F.4
-
3
-
-
8644233945
-
The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides
-
AUFSATZ, W., M. F. METTE, A. J. MATZKE and M. MATZKE, 2004 The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides. Plant Mol. Biol. 54: 793-804.
-
(2004)
Plant Mol. Biol
, vol.54
, pp. 793-804
-
-
AUFSATZ, W.1
METTE, M.F.2
MATZKE, A.J.3
MATZKE, M.4
-
4
-
-
0035878120
-
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
-
BARTEE, L., F. MALAGNAC and J. BENDER, 2001 Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev. 15: 1753-1758.
-
(2001)
Genes Dev
, vol.15
, pp. 1753-1758
-
-
BARTEE, L.1
MALAGNAC, F.2
BENDER, J.3
-
5
-
-
2642681655
-
Evolution by polyploidy in Amphibia: New insights
-
BECAK, M. L., and W. BECAK, 1998 Evolution by polyploidy in Amphibia: new insights. Cytogenet. Cell Genet. 80: 28-33.
-
(1998)
Cytogenet. Cell Genet
, vol.80
, pp. 28-33
-
-
BECAK, M.L.1
BECAK, W.2
-
6
-
-
0035958551
-
A vicious cycle: RNA silencing and DNA methylation in plants
-
BENDER, J., 2001 A vicious cycle: RNA silencing and DNA methylation in plants. Cell 106: 129-132.
-
(2001)
Cell
, vol.106
, pp. 129-132
-
-
BENDER, J.1
-
7
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
BENJAMINI, Y., and Y. HOCHBERG, 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 57: 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
BENJAMINI, Y.1
HOCHBERG, Y.2
-
8
-
-
1342310095
-
Plant sciences. Imprinting - a green variation
-
BERGER, F., 2004 Plant sciences. Imprinting - a green variation. Science 303: 483-485.
-
(2004)
Science
, vol.303
, pp. 483-485
-
-
BERGER, F.1
-
9
-
-
0020317050
-
The molecular basis of P-M hybrid dysgenesis: The role of the P element, a P-strain-specific transposon family
-
BINGHAM, P. M., M. G. KIDWELL and G. M. RUBIN, 1982 The molecular basis of P-M hybrid dysgenesis: the role of the P element, a P-strain-specific transposon family. Cell 29: 995-1004.
-
(1982)
Cell
, vol.29
, pp. 995-1004
-
-
BINGHAM, P.M.1
KIDWELL, M.G.2
RUBIN, G.M.3
-
10
-
-
0026653420
-
The essentials of DNA methylation
-
BIRD, A., 1992 The essentials of DNA methylation. Cell 70: 5-8.
-
(1992)
Cell
, vol.70
, pp. 5-8
-
-
BIRD, A.1
-
11
-
-
27644490641
-
Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis
-
BLUMENSTIEL, J. P., and D. L. HARTL, 2005 Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis. Proc. Natl. Acad. Sci. USA 102: 15965-15970.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15965-15970
-
-
BLUMENSTIEL, J.P.1
HARTL, D.L.2
-
12
-
-
0037780969
-
The basis of natural and artifical postzygotic hybridization barriers in Arabidopsis species
-
BUSHELL, C., M. SPIELMAN and R. J. SCOTT, 2003 The basis of natural and artifical postzygotic hybridization barriers in Arabidopsis species. Plant Cell 15: 1430-1442.
-
(2003)
Plant Cell
, vol.15
, pp. 1430-1442
-
-
BUSHELL, C.1
SPIELMAN, M.2
SCOTT, R.J.3
-
13
-
-
0037046810
-
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
CAO, X., and S. E. JACOBSEN, 2002 Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr. Biol. 12: 1138-1144.
-
(2002)
Curr. Biol
, vol.12
, pp. 1138-1144
-
-
CAO, X.1
JACOBSEN, S.E.2
-
14
-
-
0034712867
-
Conserved plant genes with similarity to mammalian de novo DNA methyltransferases
-
CAO, X., N. M. SPRINGER, M. G. MUSZYNSKI, R. L. PHILLIPS, S. KAEPPLER et al., 2000 Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proc. Natl. Acad. Sci. USA 97: 4979-4984.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 4979-4984
-
-
CAO, X.1
SPRINGER, N.M.2
MUSZYNSKI, M.G.3
PHILLIPS, R.L.4
KAEPPLER, S.5
-
15
-
-
0347033302
-
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
-
CAO, X., W. AUFSATZ, D. ZILBERMAN, M. F. METTE, M. S. HUANG et al., 2003 Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr. Biol. 13: 2212-2217.
-
(2003)
Curr. Biol
, vol.13
, pp. 2212-2217
-
-
CAO, X.1
AUFSATZ, W.2
ZILBERMAN, D.3
METTE, M.F.4
HUANG, M.S.5
-
16
-
-
0028312114
-
Use of recombinant substitution lines in the construction of Rflp-based genetic maps of chromosomes 6a and 6B of tetraploid wheat (Triticum-turgidum L)
-
CHEN, Z., M. DEVEY, N. A. TULEEN and G. E. HART, 1994 Use of recombinant substitution lines in the construction of Rflp-based genetic maps of chromosomes 6a and 6B of tetraploid wheat (Triticum-turgidum L). Theor. Appl. Genet. 89: 703-712.
-
(1994)
Theor. Appl. Genet
, vol.89
, pp. 703-712
-
-
CHEN, Z.1
DEVEY, M.2
TULEEN, N.A.3
HART, G.E.4
-
17
-
-
34248328910
-
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
-
CHEN, Z. J., 2007 Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu. Rev. Plant Biol. 58: 377-406.
-
(2007)
Annu. Rev. Plant Biol
, vol.58
, pp. 377-406
-
-
CHEN, Z.J.1
-
18
-
-
33645389485
-
Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
-
CHEN, Z. J., and Z. NI, 2006 Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. Bio-Essays 28: 240-252.
-
(2006)
Bio-Essays
, vol.28
, pp. 240-252
-
-
CHEN, Z.J.1
NI, Z.2
-
19
-
-
0030799238
-
Epigenetic silencing of RNA polymerase I transcription: A role for DNA methylation and histone modification in nucleolar dominance
-
CHEN, Z. J., and C. S. PIKAARD, 1997 Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. Genes Dev. 11: 2124-2136.
-
(1997)
Genes Dev
, vol.11
, pp. 2124-2136
-
-
CHEN, Z.J.1
PIKAARD, C.S.2
-
21
-
-
33644681986
-
The advantages and disadvantages of being polyploid
-
COMAI, L., 2005 The advantages and disadvantages of being polyploid. Nat. Rev. Genet. 6: 836-846.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 836-846
-
-
COMAI, L.1
-
22
-
-
0033789617
-
Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids
-
COMAI, L., A. P. TYAGI, K. WINTER, R. HOLMES-DAVIS, S. H. REYNOLDS et al., 2000 Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids. Plant Cell 12: 1551-1568.
-
(2000)
Plant Cell
, vol.12
, pp. 1551-1568
-
-
COMAI, L.1
TYAGI, A.P.2
WINTER, K.3
HOLMES-DAVIS, R.4
REYNOLDS, S.H.5
-
23
-
-
0037509896
-
FISH analysis of meiosis in Arabidopsis allopolyploids
-
COMAI, L., A. P. TYAGI and M. A. LYSAK, 2003 FISH analysis of meiosis in Arabidopsis allopolyploids. Chromosome Res. 11: 217-226.
-
(2003)
Chromosome Res
, vol.11
, pp. 217-226
-
-
COMAI, L.1
TYAGI, A.P.2
LYSAK, M.A.3
-
24
-
-
1542288824
-
Short interfering RNAs specific for potato spindle tuber viroid are found in the cytoplasm but not in the nucleus
-
DENTI, M. A., A. BOUTLA, M. TSAGRIS and M. TABLER, 2004 Short interfering RNAs specific for potato spindle tuber viroid are found in the cytoplasm but not in the nucleus. Plant J. 37: 762-769.
-
(2004)
Plant J
, vol.37
, pp. 762-769
-
-
DENTI, M.A.1
BOUTLA, A.2
TSAGRIS, M.3
TABLER, M.4
-
25
-
-
0018471503
-
Hybrid dysgenesis in Drosophila melanogaster: The biology of female and male sterility
-
ENGELS, W. R., and C. R. PRESTON, 1979 Hybrid dysgenesis in Drosophila melanogaster: the biology of female and male sterility. Genetics 92: 161-174.
-
(1979)
Genetics
, vol.92
, pp. 161-174
-
-
ENGELS, W.R.1
PRESTON, C.R.2
-
26
-
-
0033824241
-
Plant DNA methyltransferases
-
FINNEGAN, E. J., and K. A. KOVAC, 2000 Plant DNA methyltransferases. Plant Mol. Biol. 43: 189-201.
-
(2000)
Plant Mol. Biol
, vol.43
, pp. 189-201
-
-
FINNEGAN, E.J.1
KOVAC, K.A.2
-
27
-
-
0034603206
-
Integrated cytogenetic map of chromosome arm 4S of A. thaliana: Structural organization of heterochromatic knob and centromere region
-
FRANSZ, P. F., S. ARMSTRONG, J. H. DE JONG, L. D. PARNELL, C. VAN DRUNEN et al., 2000 Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region. Cell 100: 367-376.
-
(2000)
Cell
, vol.100
, pp. 367-376
-
-
FRANSZ, P.F.1
ARMSTRONG, S.2
DE JONG, J.H.3
PARNELL, L.D.4
VAN DRUNEN, C.5
-
28
-
-
0026546877
-
-
FROMMER, M., L. E. MCDONALD, D. S. ILLAR, C. . COLLIS, F. WATT et al., 1992 A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA 89: 1827-1831.
-
FROMMER, M., L. E. MCDONALD, D. S. ILLAR, C. . COLLIS, F. WATT et al., 1992 A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA 89: 1827-1831.
-
-
-
-
29
-
-
37849034684
-
Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
-
GAETA, R. T., J. C. PIRES, F. INIGUEZ- LUY, E. LEON and T. C. OSBORN, 2007 Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell 19: 3403-3417.
-
(2007)
Plant Cell
, vol.19
, pp. 3403-3417
-
-
GAETA, R.T.1
PIRES, J.C.2
INIGUEZ- LUY, F.3
LEON, E.4
OSBORN, T.C.5
-
30
-
-
0036962395
-
Embryo and endosperm development is disrupted in the female gametophytic capulet mutants of Arabidopsis
-
GRINI, P. E., G. JURGENS and M. HULSKAMP, 2002 Embryo and endosperm development is disrupted in the female gametophytic capulet mutants of Arabidopsis. Genetics 162: 1911-1925.
-
(2002)
Genetics
, vol.162
, pp. 1911-1925
-
-
GRINI, P.E.1
JURGENS, G.2
HULSKAMP, M.3
-
31
-
-
34047134940
-
External factors accelerate expression divergence between duplicate genes
-
HA, M., W. H. LI and Z. J. CHEN, 2007 External factors accelerate expression divergence between duplicate genes. Trends Genet. 23: 162-166.
-
(2007)
Trends Genet
, vol.23
, pp. 162-166
-
-
HA, M.1
LI, W.H.2
CHEN, Z.J.3
-
32
-
-
0037009520
-
Two classes of short interfering RNA in RNA silencing
-
HAMILTON, A., O. VOINNET, L. CHAPPELL and D. BAULCOMBE, 2002 Two classes of short interfering RNA in RNA silencing. EMBO J. 21: 4671-4679.
-
(2002)
EMBO J
, vol.21
, pp. 4671-4679
-
-
HAMILTON, A.1
VOINNET, O.2
CHAPPELL, L.3
BAULCOMBE, D.4
-
33
-
-
0028151259
-
-
HANFSTINGL, U., A. BERRY, E. A. KELLOGG, J. T. COSTA, 3RD, W. RUDIGER et al., 1994 Haplotypic divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: Roles for both balancing and directional selection? Genetics 138: 811-828.
-
HANFSTINGL, U., A. BERRY, E. A. KELLOGG, J. T. COSTA, 3RD, W. RUDIGER et al., 1994 Haplotypic divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: Roles for both balancing and directional selection? Genetics 138: 811-828.
-
-
-
-
34
-
-
0000227006
-
Cardaminopsis suecica (Fr.) Hiit., a northern amphidiploid species
-
HYLANDER, N., 1957 Cardaminopsis suecica (Fr.) Hiit., a northern amphidiploid species. Bull. Jard. Bot. Etat. Brux. 27: 591-604.
-
(1957)
Bull. Jard. Bot. Etat. Brux
, vol.27
, pp. 591-604
-
-
HYLANDER, N.1
-
35
-
-
0030305457
-
A language for data analysis and graphics
-
IHAKA, R., and R. GENTLEMAN, 1996 A language for data analysis and graphics. J. Comput. Graph. Stat. 5: 299-314.
-
(1996)
J. Comput. Graph. Stat
, vol.5
, pp. 299-314
-
-
IHAKA, R.1
GENTLEMAN, R.2
-
36
-
-
0037041422
-
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
-
JACKSON, J. P., A. M. LINDROTH, X. CAO and S. E. JACOBSEN, 2002 Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416: 556-560.
-
(2002)
Nature
, vol.416
, pp. 556-560
-
-
JACKSON, J.P.1
LINDROTH, A.M.2
CAO, X.3
JACOBSEN, S.E.4
-
37
-
-
0034708232
-
Ectopic hypermethylation of flower-specific genes in Arabidopsis
-
JACOBSEN, S. E., H. SAKAI, E. J. FINNEGAN, X. CAO and E. M. MEYEROWITZ, 2000 Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr. Biol. 10: 179-186.
-
(2000)
Curr. Biol
, vol.10
, pp. 179-186
-
-
JACOBSEN, S.E.1
SAKAI, H.2
FINNEGAN, E.J.3
CAO, X.4
MEYEROWITZ, E.M.5
-
38
-
-
33646890870
-
A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers
-
JAKOBSSON, M., J. HAGENBLAD, S. TAVARE, T. SALL, C. HALLDEN et al., 2006 A unique recent origin of the allotetraploid species Arabidopsis suecica: evidence from nuclear DNA markers. Mol. Biol. Evol. 23: 1217-1231.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 1217-1231
-
-
JAKOBSSON, M.1
HAGENBLAD, J.2
TAVARE, S.3
SALL, T.4
HALLDEN, C.5
-
39
-
-
0035873992
-
RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance
-
JONES, L., F. RATCLIFF and D. C. BAULCOMBE, 2001 RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance. Curr. Biol. 11: 747-757.
-
(2001)
Curr. Biol
, vol.11
, pp. 747-757
-
-
JONES, L.1
RATCLIFF, F.2
BAULCOMBE, D.C.3
-
40
-
-
0029257555
-
Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species
-
KAMM, A., I. GALASSO, T. SCHMIDT and J. S. HESLOP-HARRISON, 1995 Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species. Plant Mol. Biol. 27: 853-862.
-
(1995)
Plant Mol. Biol
, vol.27
, pp. 853-862
-
-
KAMM, A.1
GALASSO, I.2
SCHMIDT, T.3
HESLOP-HARRISON, J.S.4
-
41
-
-
0037354734
-
Arabidopsis MET1 cytosine methyltransferase mutants
-
KANKEL, M. W., D. E. RAMSEY, T. L. STOKES, S. K. FLOWERS, J. R. HAAG et al., 2003 Arabidopsis MET1 cytosine methyltransferase mutants. Genetics 163: 1109-1122.
-
(2003)
Genetics
, vol.163
, pp. 1109-1122
-
-
KANKEL, M.W.1
RAMSEY, D.E.2
STOKES, T.L.3
FLOWERS, S.K.4
HAAG, J.R.5
-
42
-
-
0037226595
-
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
-
KASHKUSH, K., M. FELDMAN and A. A. LEVY, 2003 Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 33: 102-106.
-
(2003)
Nat. Genet
, vol.33
, pp. 102-106
-
-
KASHKUSH, K.1
FELDMAN, M.2
LEVY, A.A.3
-
43
-
-
0037418586
-
Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis
-
KATO, M., A. MIURA, J. BENDER, S. E. JACOBSEN and T. KAKUTANI, 2003 Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr. Biol. 13: 421-426.
-
(2003)
Curr. Biol
, vol.13
, pp. 421-426
-
-
KATO, M.1
MIURA, A.2
BENDER, J.3
JACOBSEN, S.E.4
KAKUTANI, T.5
-
44
-
-
0019579939
-
Hybrid dysgenesis in Drosophila melanogaster: The genetics of cytotype determination in a neutral strain
-
KIDWELL, M. G., 1981 Hybrid dysgenesis in Drosophila melanogaster: the genetics of cytotype determination in a neutral strain. Genetics 98: 275-290.
-
(1981)
Genetics
, vol.98
, pp. 275-290
-
-
KIDWELL, M.G.1
-
45
-
-
0034950442
-
Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus
-
KISHIMOTO, N., H. SAKAI, J. JACKSON, S. E. JACOBSEN, E. M. MEYEROWITZ et al., 2001 Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus. Plant Mol. Biol. 46: 171-183.
-
(2001)
Plant Mol. Biol
, vol.46
, pp. 171-183
-
-
KISHIMOTO, N.1
SAKAI, H.2
JACKSON, J.3
JACOBSEN, S.E.4
MEYEROWITZ, E.M.5
-
46
-
-
1542285163
-
A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance
-
LAWRENCE, R. J., K. EARLEY, O. PONTES, M. SILVA, Z. J. CHEN et al., 2004 A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol. Cell 13: 599-609.
-
(2004)
Mol. Cell
, vol.13
, pp. 599-609
-
-
LAWRENCE, R.J.1
EARLEY, K.2
PONTES, O.3
SILVA, M.4
CHEN, Z.J.5
-
47
-
-
0035810998
-
Protein-coding genes are epigenetically regulated in Arabidopsis polyploids
-
LEE, H. S., and Z. J. CHEN, 2001 Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc. Natl. Acad. Sci. USA 98: 6753-6758.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6753-6758
-
-
LEE, H.S.1
CHEN, Z.J.2
-
48
-
-
3042529193
-
Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species
-
LEE, H. S., J. L. WANG, L. TIAN, H. M. JIANG, M. A. BLACK et al., 2004 Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species. Plant Biotechnol. J. 2: 45-57.
-
(2004)
Plant Biotechnol. J
, vol.2
, pp. 45-57
-
-
LEE, H.S.1
WANG, J.L.2
TIAN, L.3
JIANG, H.M.4
BLACK, M.A.5
-
50
-
-
0036918868
-
The impact of polyploidy on grass genome evolution
-
LEVY, A. A., and M. FELDMAN, 2002 The impact of polyploidy on grass genome evolution. Plant Physiol. 130: 1587-1593.
-
(2002)
Plant Physiol
, vol.130
, pp. 1587-1593
-
-
LEVY, A.A.1
FELDMAN, M.2
-
51
-
-
0036528697
-
Genetic variation in Arabidopsis suecica and its parental species A. arenosa and A. thaliana
-
LIND-HALLDEN, C., C. HALLDEN and T. SALL, 2002 Genetic variation in Arabidopsis suecica and its parental species A. arenosa and A. thaliana. Hereditas 136: 45-50.
-
(2002)
Hereditas
, vol.136
, pp. 45-50
-
-
LIND-HALLDEN, C.1
HALLDEN, C.2
SALL, T.3
-
52
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
LINDROTH, A. M., X. CAO, J. P. JACKSON, D. ZILBERMAN, C. M. MCCALLUM et al., 2001 Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 292: 2077-2080.
-
(2001)
Science
, vol.292
, pp. 2077-2080
-
-
LINDROTH, A.M.1
CAO, X.2
JACKSON, J.P.3
ZILBERMAN, D.4
MCCALLUM, C.M.5
-
53
-
-
4644312235
-
The role of RNA interference in heterochromatic silencing
-
LIPPMAN, Z., and R. MARTIENSSEN, 2004 The role of RNA interference in heterochromatic silencing. Nature 431: 364-370.
-
(2004)
Nature
, vol.431
, pp. 364-370
-
-
LIPPMAN, Z.1
MARTIENSSEN, R.2
-
54
-
-
4243085624
-
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
-
LIPPMAN, Z., B. MAY, C. YORDAN, T. SINGER and R. MARTIENSSEN, 2003 Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1: E67.
-
(2003)
PLoS Biol
, vol.1
-
-
LIPPMAN, Z.1
MAY, B.2
YORDAN, C.3
SINGER, T.4
MARTIENSSEN, R.5
-
55
-
-
0037871324
-
Hylandra - a new genus of Cruciferae
-
LOVE, A., 1961 Hylandra - a new genus of Cruciferae. Sven. Bot. Tidskr. 55: 211-217.
-
(1961)
Sven. Bot. Tidskr
, vol.55
, pp. 211-217
-
-
LOVE, A.1
-
56
-
-
0035984262
-
Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids
-
MADLUNG, A., R. W. MASUELLI, B. WATSON, S. H. REYNOLDS, J. DAVISON et al., 2002 Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol. 129: 733-746.
-
(2002)
Plant Physiol
, vol.129
, pp. 733-746
-
-
MADLUNG, A.1
MASUELLI, R.W.2
WATSON, B.3
REYNOLDS, S.H.4
DAVISON, J.5
-
57
-
-
0017570818
-
Specificity of Hpa II and Hae III DNA methylases
-
MANN, M. B., and H. O. SMITH, 1977 Specificity of Hpa II and Hae III DNA methylases. Nucleic Acids Res. 4: 4211-4221.
-
(1977)
Nucleic Acids Res
, vol.4
, pp. 4211-4221
-
-
MANN, M.B.1
SMITH, H.O.2
-
58
-
-
0035839055
-
DNA methylation and epigenetic inheritance in plants and filamentous fungi
-
MARTIENSSEN, R., and V. COLOT, 2001 DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293: 1070-1074.
-
(2001)
Science
, vol.293
, pp. 1070-1074
-
-
MARTIENSSEN, R.1
COLOT, V.2
-
59
-
-
0028184403
-
Stomatal size in fossil plants: Evidence for polyploidy in majority of angiosperms
-
MASTERSON, J., 1994 Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264: 421-424.
-
(1994)
Science
, vol.264
, pp. 421-424
-
-
MASTERSON, J.1
-
60
-
-
10644237968
-
RNAi-mediated pathways in the nucleus
-
MATZKE, M. A., and J. A. BIRCHLER, 2005 RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 6: 24-35.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 24-35
-
-
MATZKE, M.A.1
BIRCHLER, J.A.2
-
61
-
-
0028060576
-
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases
-
MCCLELLAND, M., M. NELSON and E. RASCHKE, 1994 Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. 22: 3640-3659.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3640-3659
-
-
MCCLELLAND, M.1
NELSON, M.2
RASCHKE, E.3
-
62
-
-
0021715393
-
The significance of responses of the genome to challenge
-
MCCLINTOCK, B., 1984 The significance of responses of the genome to challenge. Science 226: 792-801.
-
(1984)
Science
, vol.226
, pp. 792-801
-
-
MCCLINTOCK, B.1
-
63
-
-
0023874965
-
an overview
-
1988 Biological applications of the SAS system
-
MOSER, E. B., A. M. SAXTON and J. P. GEAGHAN, 1988 Biological applications of the SAS system: an overview. Comput. Appl. Biosci. 4: 233-238.
-
Comput. Appl. Biosci
, vol.4
, pp. 233-238
-
-
MOSER, E.B.1
SAXTON, A.M.2
GEAGHAN, J.P.3
-
64
-
-
0141991410
-
The origins of Arabidopsis suecica (Brassicaceae), as indicated by nuclear rDNA sequences, and implications for rDNA evolution
-
O'KANE, S., B. SCHAAL and I. AL-S HEHBAZ, 1995 The origins of Arabidopsis suecica (Brassicaceae), as indicated by nuclear rDNA sequences, and implications for rDNA evolution. Syst. Bot. 21: 559-566.
-
(1995)
Syst. Bot
, vol.21
, pp. 559-566
-
-
O'KANE, S.1
SCHAAL, B.2
AL, I.3
HEHBAZ, S.4
-
65
-
-
0009673698
-
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid
-
O'NEILL, R. J., M. J. O'NEILL and J. A. GRAVES, 1998 Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393: 68-72.
-
(1998)
Nature
, vol.393
, pp. 68-72
-
-
O'NEILL, R.J.1
O'NEILL, M.J.2
GRAVES, J.A.3
-
66
-
-
0037370585
-
Understanding mechanisms of novel gene expression in polyploids
-
OSBORN, T. C., J. C. PIRES, J. A. BIRCHLER, D. L. AUGER, Z. J. CHEN et al., 2003 Understanding mechanisms of novel gene expression in polyploids. Trends Genet. 19: 141-147.
-
(2003)
Trends Genet
, vol.19
, pp. 141-147
-
-
OSBORN, T.C.1
PIRES, J.C.2
BIRCHLER, J.A.3
AUGER, D.L.4
CHEN, Z.J.5
-
67
-
-
0034332997
-
The epigenetics of nucleolar dominance
-
PIKAARD, C. S., 2000 The epigenetics of nucleolar dominance. Trends Genet. 16: 495-500.
-
(2000)
Trends Genet
, vol.16
, pp. 495-500
-
-
PIKAARD, C.S.1
-
68
-
-
0001818647
-
Systematic relationships of Arabidopsis: A molecular and morphological perspective
-
edited by E. M. MEYEROWITZ and C. R. SOMMERVILLE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
PRICE, R. A., J. D. PALMER and I. AL- SHEHBAZ, 1994 Systematic relationships of Arabidopsis: a molecular and morphological perspective, pp. 7-19 in Arabidopsis, edited by E. M. MEYEROWITZ and C. R. SOMMERVILLE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1994)
Arabidopsis
, pp. 7-19
-
-
PRICE, R.A.1
PALMER, J.D.2
AL- SHEHBAZ, I.3
-
69
-
-
0037154972
-
Epigenetic codes for heterochromatin formation and silencing: Rounding up the usual suspects
-
RICHARDS, E. J., and S. C. ELGIN, 2002 Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects. Cell 108: 489-500.
-
(2002)
Cell
, vol.108
, pp. 489-500
-
-
RICHARDS, E.J.1
ELGIN, S.C.2
-
70
-
-
0033538974
-
Genome evolution. Global methylation in eutherian hybrids
-
ROEMER, I., F. GRUTZNER, H. WINKING, T. HAAF, A. ORTH et al., 1999 Genome evolution. Global methylation in eutherian hybrids. Nature 401: 131-132.
-
(1999)
Nature
, vol.401
, pp. 131-132
-
-
ROEMER, I.1
GRUTZNER, F.2
WINKING, H.3
HAAF, T.4
ORTH, A.5
-
71
-
-
16344367626
-
Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)
-
SALMON, A., M. L. AINOUCHE and J. F. WENDEL, 2005 Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol. Ecol. 14: 1163-1175.
-
(2005)
Mol. Ecol
, vol.14
, pp. 1163-1175
-
-
SALMON, A.1
AINOUCHE, M.L.2
WENDEL, J.F.3
-
72
-
-
0038670503
-
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis
-
SAZE, H., O. MITTELSTEN SCHEID and J. PASZKOWSKI, 2003 Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat. Genet. 34: 65-69.
-
(2003)
Nat. Genet
, vol.34
, pp. 65-69
-
-
SAZE, H.1
MITTELSTEN SCHEID, O.2
PASZKOWSKI, J.3
-
73
-
-
0034866855
-
Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
-
SHAKED, H., K. KASHKUSH, H. OZKAN, M. FELDMAN and A. A. LEVY, 2001 Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13: 1749-1759.
-
(2001)
Plant Cell
, vol.13
, pp. 1749-1759
-
-
SHAKED, H.1
KASHKUSH, K.2
OZKAN, H.3
FELDMAN, M.4
LEVY, A.A.5
-
74
-
-
33846524902
-
Secondary siRNAs result from unprimed RNA synthesis and form a distinct class
-
SIJEN, T., F. A. STEINER, K. L. THIJSSEN and R. H. PLASTERK, 2007 Secondary siRNAs result from unprimed RNA synthesis and form a distinct class. Science 315: 244-247.
-
(2007)
Science
, vol.315
, pp. 244-247
-
-
SIJEN, T.1
STEINER, F.A.2
THIJSSEN, K.L.3
PLASTERK, R.H.4
-
75
-
-
0347388384
-
Advances in the study of polyploidy since plant speciation
-
SOLTIS, D. E., P. S. SOLTIS and J. A. TATE, 2003 Advances in the study of polyploidy since plant speciation. New Phytol. 161: 173-191.
-
(2003)
New Phytol
, vol.161
, pp. 173-191
-
-
SOLTIS, D.E.1
SOLTIS, P.S.2
TATE, J.A.3
-
76
-
-
0034691216
-
The role of genetic and genomic attributes in the success of polyploids
-
SOLTIS, P. S., and D. E. SOLTIS, 2000 The role of genetic and genomic attributes in the success of polyploids. Proc. Natl. Acad. Sci. USA 97: 7051-7057.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7051-7057
-
-
SOLTIS, P.S.1
SOLTIS, D.E.2
-
77
-
-
0029162810
-
Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
-
SONG, K., P. LU, K. TANG and T. C. OSBORN, 1995 Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. USA 92: 7719-7723.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 7719-7723
-
-
SONG, K.1
LU, P.2
TANG, K.3
OSBORN, T.C.4
-
78
-
-
0037188494
-
Induced instability of two Arabidopsis constitutive pathogen-response alleles
-
STOKES, T. L., and E. J. RICHARDS, 2002 Induced instability of two Arabidopsis constitutive pathogen-response alleles. Proc. Natl. Acad. Sci. USA 99: 7792-7796.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7792-7796
-
-
STOKES, T.L.1
RICHARDS, E.J.2
-
79
-
-
0037080492
-
Epigenetic variation in Arabidopsis disease resistance
-
STOKES, T. L., B. N. KUNKEL and E. J. RICHARDS, 2002 Epigenetic variation in Arabidopsis disease resistance. Genes Dev. 16: 171-182.
-
(2002)
Genes Dev
, vol.16
, pp. 171-182
-
-
STOKES, T.L.1
KUNKEL, B.N.2
RICHARDS, E.J.3
-
80
-
-
0037039164
-
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3
-
TOMPA, R., C. M. MCCALLUM, J. DELROW, J. G. HENIKOFF, B. VAN STEENSEL et al., 2002 Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Curr. Biol. 12: 65-68.
-
(2002)
Curr. Biol
, vol.12
, pp. 65-68
-
-
TOMPA, R.1
MCCALLUM, C.M.2
DELROW, J.3
HENIKOFF, J.G.4
VAN STEENSEL, B.5
-
81
-
-
0027303886
-
Arabidopsis thaliana DNA methylation mutants
-
VONGS, A., T. KAKUTANI, R. A. MARTIENSSEN and E. J. RICHARDS, 1993 Arabidopsis thaliana DNA methylation mutants. Science 260: 1926-1928.
-
(1993)
Science
, vol.260
, pp. 1926-1928
-
-
VONGS, A.1
KAKUTANI, T.2
MARTIENSSEN, R.A.3
RICHARDS, E.J.4
-
82
-
-
0034065942
-
Genetic and epigenetic incompatibilities underlie hybrid dysgenesis in Peromyscus
-
VRANA, P. B., J. A. FOSSELLA, P. MATTESON, T. DEL RIO, M. J. O'NEILL et al., 2000 Genetic and epigenetic incompatibilities underlie hybrid dysgenesis in Peromyscus. Nat. Genet. 25: 120-124.
-
(2000)
Nat. Genet
, vol.25
, pp. 120-124
-
-
VRANA, P.B.1
FOSSELLA, J.A.2
MATTESON, P.3
DEL RIO, T.4
O'NEILL, M.J.5
-
83
-
-
4344642732
-
Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids
-
WANG, J., L. TIAN, A. MADLUNG, H. S. LEE, M. CHEN et al., 2004 Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids. Genetics 167: 1961-1973.
-
(2004)
Genetics
, vol.167
, pp. 1961-1973
-
-
WANG, J.1
TIAN, L.2
MADLUNG, A.3
LEE, H.S.4
CHEN, M.5
-
84
-
-
19944378073
-
Methods for genome-wide analysis of gene expression changes in polyploids
-
WANG, J., J. J. LEE, L. TIAN, H. S. LEE, M. CHEN et al., 2005 Methods for genome-wide analysis of gene expression changes in polyploids. Methods Enzymol. 395: 570-596.
-
(2005)
Methods Enzymol
, vol.395
, pp. 570-596
-
-
WANG, J.1
LEE, J.J.2
TIAN, L.3
LEE, H.S.4
CHEN, M.5
-
85
-
-
33644762929
-
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
-
WANG, J., L. TIAN, H. S. LEE, N. E. WEI, H. JIANG et al., 2006 Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 172: 507-517.
-
(2006)
Genetics
, vol.172
, pp. 507-517
-
-
WANG, J.1
TIAN, L.2
LEE, H.S.3
WEI, N.E.4
JIANG, H.5
-
86
-
-
0033974956
-
Genome evolution in polyploids
-
WENDEL, J. F., 2000 Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
-
(2000)
Plant Mol. Biol
, vol.42
, pp. 225-249
-
-
WENDEL, J.F.1
-
87
-
-
0035344021
-
Yesterday's polyploidization and the mystery of diploidization
-
WOLFE, K. H., 2001 Yesterday's polyploidization and the mystery of diploidization. Nat. Rev. Genet. 2: 333-341.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 333-341
-
-
WOLFE, K.H.1
-
88
-
-
0348044518
-
Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase
-
XIAO, W., M. GEHRING, Y. CHOI, L. MARGOSSIAN, H. PU et al., 2003 Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase. Dev. Cell 5: 891-901.
-
(2003)
Dev. Cell
, vol.5
, pp. 891-901
-
-
XIAO, W.1
GEHRING, M.2
CHOI, Y.3
MARGOSSIAN, L.4
PU, H.5
-
89
-
-
0029998065
-
Genetic analysis of genomic methylation patterns in plants and mammals
-
YODER, J. A., and T. H. BESTOR, 1996 Genetic analysis of genomic methylation patterns in plants and mammals. Biol. Chem. 377: 605-610.
-
(1996)
Biol. Chem
, vol.377
, pp. 605-610
-
-
YODER, J.A.1
BESTOR, T.H.2
-
90
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
YODER, J. A., C. P. WALSH and T. H. BESTOR, 1997 Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13: 335-340.
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
YODER, J.A.1
WALSH, C.P.2
BESTOR, T.H.3
-
91
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
-
ZHANG, X., J. YAZAKI, A. SUNDARESAN, S. COKUS, S. W. CHAN et al., 2006 Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 126: 1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
ZHANG, X.1
YAZAKI, J.2
SUNDARESAN, A.3
COKUS, S.4
CHAN, S.W.5
-
92
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
ZILBERMAN, D., M. GEHRING, R. K. TRAN, T. BALLINGER and S. HENIKOFF, 2007 Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet. 39: 61-69.
-
(2007)
Nat. Genet
, vol.39
, pp. 61-69
-
-
ZILBERMAN, D.1
GEHRING, M.2
TRAN, R.K.3
BALLINGER, T.4
HENIKOFF, S.5
|