External factors accelerate expression divergence between duplicate genes

Trends in Genetics

Volumn 23, Issue 4, 2007, Pages 162-166

  Ha, Misook ^a   Li, Wen Hsiung ^b   Chen, Z Jeffrey ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; DEVELOPMENTAL GENETICS; DUPLICATE GENE; ENVIRONMENTAL FACTOR; ENVIRONMENTAL STRESS; EVOLUTIONARY ADAPTATION; EVOLUTIONARY RATE; GENE DUPLICATION; GENE EXPRESSION PROFILING; GENETIC VARIABILITY; GENOTYPE ENVIRONMENT INTERACTION; MICROARRAY ANALYSIS; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; SHORT SURVEY;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; EVOLUTION, MOLECULAR; GENE DUPLICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, DUPLICATE; GENES, PLANT; VARIATION (GENETICS);

ARABIDOPSIS THALIANA;

EID: 34047134940     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tig.2007.02.005     Document Type: Short Survey

References (30)

1. Ohno S. Evolution by Gene Duplication (1970), Springer-Verlag
2. Wolfe K.H., and Li W.-H. Molecular evolution meets the genomics revolution. Nat. Genet. 33 (2003) 255-265
3. Wolfe K., and Shields D.S. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387 (1997) 708-713
4. Blanc G., et al. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13 (2003) 137-144
5. Vision T.J., et al. The origins of genomic duplications in Arabidopsis. Science 290 (2000) 2114-2117
6. Bowers J.E., et al. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422 (2003) 433-438
7. Blanc G., and Wolfe K.H. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16 (2004) 1679-1691
8. Yu J., et al. The genomes of Oryza sativa: A history of duplications. PLoS Biol. 3 (2005) e38
9. Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
10. Gu Z., et al. Role of duplicate genes in genetic robustness against null mutations. Nature 421 (2003) 63-66
11. Thomas B.C., et al. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16 (2006) 934-946
12. Lynch M., and Force A. The probability of duplicate gene preservation by subfunctionalization. Genetics 154 (2000) 459-473
13. Lynch M., et al. The probability of preservation of a newly arisen gene duplicate. Genetics 159 (2001) 1789-1804
14. Li W.H., et al. Expression divergence between duplicate genes. Trends Genet. 21 (2005) 602-607
15. Gu Z., et al. Duplicate genes increase gene expression diversity within and between species. Nat Genet. 36 (2004) 577-579
16. Stolc V., et al. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science 306 (2004) 655-660
17. Xiong L., et al. Cell signaling during cold, drought, and salt stress. Plant Cell 14 Suppl. (2002) S165-S183
18. Seki M., et al. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13 (2001) 61-72
19. Chisholm S.T., et al. Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124 (2006) 803-814
20. Wilcoxon F. Individual comparisons by ranking methods. Biometrics Bulletin 1 (1945) 80-83
21. Massey F.J.J. The Kolmogorov-Smirnov test of goodness of fit. J. Am. Stat. Assoc. 46 (1951) 68-78
22. Berardini T.Z., et al. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135 (2004) 745-755
23. Jack T. Relearning our ABCs: new twists on an old model. Trends Plant Sci. 6 (2001) 310-316
24. Pelaz S., et al. B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 405 (2000) 200-203
25. Luan S., et al. pCyP B: a chloroplast-localized, heat shock-responsive cyclophilin from fava bean. Plant Cell 6 (1994) 885-892
26. Marivet J., et al. Effects of abiotic stresses on cyclophilin gene-expression in maize and bean and sequence-analysis of bean cyclophilin cDNA. Plant Sci. 84 (1992) 171-178
27. Seoighe C., and Gehring C. Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 20 (2004) 461-464
28. McClintock B. The significance of responses of the genome to challenge. Science 226 (1984) 792-801
29. Bomblies K., and Doebley J.F. Pleiotropic effects of the duplicate maize FLORICAULA/LEAFY genes zfl1 and zfl2 on traits under selection during maize domestication. Genetics 172 (2006) 519-531
30. Chen Z.J., and Ni Z. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. Bioessays 28 (2006) 240-252