Molecular evolution and population genetics of two Drosophila mettleri cytochrome P450 genes involved in host plant utilization

Molecular Ecology

Volumn 17, Issue 13, 2008, Pages 3211-3221

  Bono, Jeremy M ^a   Matzkin, Luciano M ^a   Castrezana, Sergio ^b   Markow, Therese A ^a  

^a University of Arizona   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

Author keywords

Adaptation; Cytochrome P450; Host plant; Positive selection; Saguaro cactus; Senita cactus

Indexed keywords

CYTOCHROME P450; DROSOPHILA PROTEIN; ISOENZYME;

ANIMAL; ARTICLE; CACTACEAE; DROSOPHILA; ENZYMOLOGY; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HOST PARASITE INTERACTION; METABOLISM; MEXICO; MOLECULAR EVOLUTION; PARASITOLOGY; PHYSIOLOGY; POPULATION GENETICS; UNITED STATES;

ANIMALS; ARIZONA; CACTACEAE; CALIFORNIA; CYTOCHROME P-450 ENZYME SYSTEM; DROSOPHILA; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; GENETICS, POPULATION; GEOGRAPHY; HOST-PARASITE INTERACTIONS; ISOENZYMES; MEXICO; POLYMORPHISM, GENETIC; SELECTION (GENETICS); VARIATION (GENETICS);

CACTACEAE; CARNEGIEA GIGANTEA; DROSOPHILA METTLERI; HEXAPODA; PACHYCEREUS SCHOTTII;

EID: 45549096534     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2008.03823.x     Document Type: Article

References (53)

1. Ballard JWO, Rand DM (2005) The population biology of mitochondrial DNA and its phylogenetic implications. Annual Review of Ecology, Evolution, and Systematics, 36, 621 642.
2. Berlocher SH, Feder JL (2002) Sympatric speciation in phytophagous insects: moving beyond controversy. Annual Review of Entomology, 47, 773 815.
3. Bernays EA, Graham M (1988) On the evolution of host specificity in phytophagous arthropods. Ecology, 69, 886 892.
4. Danielson PB, Foster JLM, McMahill MM, Smith MK, Fogleman JC (1998) Induction by alkaloids and phenobarbital of Family 4 Cytochrome P450s in Drosophila: evidence for involvement in host plant utilization. Molecular and General Genetics, 259, 54 59.
5. Danielson PB, Frank MR, Fogleman JC (1994) Comparison of larval and adult P-450 activity levels for alkaloid metabolism in desert Drosophila. Journal of Chemical Ecology, 20, 1893 1906.
6. Danielson PB, Macintyre RJ, Fogleman JC (1995) Isolation of novel cytochrome-P450 genes from alkaloid-tolerant cactophilic Drosophila and their phylogenetic relatives. Journal of Cellular Biochemistry, 196 196.
7. Danielson PB, MacIntyre RJ, Fogleman JC (1997) Molecular cloning of a family of xenobiotic-inducible drosophilid cytochrome P450s: evidence for involvement in host-plant allelochemical resistance. Proceedings of the National Academy of Sciences, USA, 94, 10797 10802.
8. Despres L, David JP, Gallet C (2007) The evolutionary ecology of insect resistance to plant chemicals. Trends in Ecology & Evolution, 22, 298 307.
9. Drosophila 12 Genomes Consortium (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450, 203 218.
10. Durando CM, Baker RH, Etges WJ et al 2000) Phylogenetic analysis of the repleta species group of the genus Drosophila using multiple sources of characters. Molecular Phylogenetics and Evolution, 16, 296 307.
11. Excoffier L, Laval G, Balding D (2003) Gametic phase estimation over large genomic regions using an adaptive window approach. Human Genomics, 1, 7 19.
12. Excoffier L, Laval G, Schneider S (2005) arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
13. Eyre-Walker A (2002) Changing effective population size and the McDonald-Kreitman test. Genetics, 162, 2017 2024.
14. Fogleman JC (2000) Response of Drosophila melanogaster to selection for P450-mediated resistance to isoquinoline alkaloids. Chemico-Biological Interactions, 125, 93 105.
15. Fogleman JC, Danielson PB (2001) Chemical interactions in the cactus-microorganism-Drosophila model system of the Sonoran Desert. American Zoologist, 41, 877 889.
16. Fogleman JC, Heed WB, Kircher HW (1982) Drosophila mettleri and senita cactus alkaloids: fitness measurements and their ecological significance. Comparative Biochemistry and Physiology, 71, 413 417.
17. Fogleman JC, Danielson PB, MacIntyre RJ (1998) The molecular basis of adaptation in Drosophila: the role of cytochrome P450s. Evolutionary Biology, 30, 15 77.
18. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294 299.
19. Frank MR, Fogleman JC (1992) Involvement of cytochrome-P450 in host-plant utilization by Sonoran Desert Drosophila. Proceedings of the National Academy of Sciences, USA, 89, 11998 12002.
20. Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693 709.
21. Funk DJ, Filchak KE, Feder JL (2002) Herbivorous insects: model systems for the comparative study of speciation ecology. Genetica, 116, 251 267.
22. Hahn MW (2008) Toward a selection theory of molecular evolution. Evolution, 62, 255 265.
23. Hahn MW, Rausher MD, Cunningham CW (2002) Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. Genetics, 161, 11 20.
24. Hoekstra HE, Coyne JA (2007) The locus of evolution: evo devo and the genetics of adaptation. Evolution, 61, 995 1016.
25. Hudson RR (1997) Estimating the recombination parameter of a finite population model without selection. Genetic Research, 5, 245 250.
26. Hudson RR, Kreitman M, Montserrat A (1987) A test of neutral molecular evolution based on nucleotide data. Genetics, 116, 153 159.
27. Hurtado LA, Erez T, Castrezana S, Markow TA (2004) Contrasting population genetic patterns and evolutionary histories among sympatric Sonoran Desert cactophilic Drosophila. Molecular Ecology, 13, 1365 1375.
28. Kircher HW (1969) The distribution of sterols, alkaloids and fatty acids in senita cactus, Lophocereus schotii, over its range in Sonora, Mexico. Phytochemistry, 8, 1481 1488.
29. Kircher HW (1982) Chemical composition of cacti and its relationship to Sonoran Desert Drosophila. In: Ecological Genetics and Evolution: the Cactus-Yeast-Drosophila System (eds Barker JSF, Starmer WT pp. 143 158. Academic Press, Sydney.
30. Kircher HW, Heed WB, Russell JS, Grove J (1967) Senita cactus alkaloids: their significance to Sonoran Desert Drosophila ecology. Journal of Insect Physiology, 13, 1869 1874.
31. Li XC, Schuler MA, Berenbaum MR (2007) Molecular mechanisms of metabolic resistance to synthetic and natural xenobiotics. Annual Review of Entomology, 52, 231 253.
32. Machado CA, Matzkin LM, Reed LK, Markow TA (2007) Multilocus nuclear sequences reveal intra- and interspecific relationships among chromosomally polymorphic species of cactophilic Drosophila. Molecular Ecology, 16, 3009 2024.
33. Markow TA, Castrezana S, Pfeiler E (2002) Flies across the water: genetic differentiation and reproductive isolation in allopatric desert Drosophila. Evolution, 56, 546 552.
34. Markow TA, Fogleman JC, Heed WB (1983) Reproductive isolation in Sonoran Desert Drosophila. Evolution, 37, 649 652.
35. Matzkin LM (2004) Population genetics and geographic variation of alcohol dehydrogenase (Adh) paralogs and glucose-6-phosphate dehydrogenase (G6pd) in Drosophila mojavensis. Molecular Biology and Evolution, 21, 276 285.
36. Matzkin LM (2005) Activity variation in alcohol dehydrogenase paralogs is associated with adaptation to cactus host use in cactophilic Drosophila. Molecular Ecology, 14, 2223 2231.
37. Matzkin LM (2008) Molecular basis of host adaptation in cactophilic Drosophila: molecular evolution of a glutathione S-transferase (GstD1) gene in Drosophila mojavensis. Genetics, 178, 1073 1083.
38. Matzkin LM, Eanes WF (2003) Sequence variation of alcohol dehydrogenase (Adh) paralogs in cactophilic Drosophila. Genetics, 163, 181 194.
39. Matzkin LM, Watts TD, Bitler BG, Machado CA, Markow TA (2006) Functional genomics of cactus host shifts in Drosophila mojavensis. Molecular Ecology, 15, 4635 4643.
40. McDonald JM, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature, 351, 652 654.
41. Meyer JM, Fogleman JC (1987) Significance of saguaro cactus alkaloids in ecology of Drosophila mettleri, a soil-breeding, cactophilic drosophilid. Journal of Chemical Ecology, 13, 2069 2081.
42. Mitter C, Farrel B, Wiegmann B (1988) The phylogenetic study of adaptive zones: has phytophagy promoted insect diversification? American Naturalist, 138, 107 128.
43. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
44. Nielsen R (2005) Molecular signatures of natural selection. Annual Review of Genetics, 39, 197 218.
45. Reed LK, Nyboer M, Markow TA (2007) Evolutionary relationships of Drosophila mojavensis geographic host races and their sister species Drosophila arizonae. Molecular Ecology, 16, 1007 1022.
46. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) dnasp, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496 2497.
47. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 595.
48. Vasemagi A, Primmer CR (2005) Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies. Molecular Ecology, 14, 3623 3642.
49. Von Wachenfeldt C, Johnson EF (1995) Structures of eukaryotic cytochrome P450 enzymes. In: Cytochrome P450 (ed. Ortiz de Motellano PR pp. 183 223. Plenum, New York.
50. Wall JD, Andolfatto P, Przeworski M (2002) Testing models of selection and demography in Drosophila simulans. Genetics, 162, 203 216.
51. Wray GA (2007) The evolutionary significance of cis-regulatory mutations. Nature Reviews Genetics, 8, 206 216.
52. Yang Z (1997) paml: a program package for phylogenetic analysis by maximum likelihood. Computer Applications in Biosciences, 13, 555 556.
53. Zhang J, Nielsen R, Yang Z (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Molecular Biology and Evolution, 22, 2472 2479.