Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7

Genetics

Volumn 161, Issue 1, 2002, Pages 11-20

  Hahn, Matthew W ^a   Rausher, Mark D ^a   Cunningham, Clifford W ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIOPHAGE T7; DNA POLYMORPHISM; DNA RECOMBINATION; GENE MUTATION; GENETIC SELECTION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SAMPLING;

UNIDENTIFIED BACTERIOPHAGE;

EID: 0036262851     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (45)

1. Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
2. Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
3. Levels of naturally occurring DNA polymorphism correlate with recombination rates in Drosophila melanogaster
4. The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
5. Experimental molecular evolution of Bacteriophage T7
6. Characterization of single-nucleotide polymorphisms in coding regions of human genes
7. The effect of deleterious mutations on neutral molecular variation
8. The pattern of neutral molecular variation under the background selection model
9. Parallel molecular evolution of deletions and nonsense mutations in Bacteriophage T7
10. Complete nucleotide sequence of Bacteriophage T7 DNA and the locations of T7 genetic elements
11. Hitchhiking under positive Darwinian selection
12. Positive and negative selection on the human genome
13. Statistical tests of neutrality of mutations
14. New statistical tests of neutrality for DNA samples from a population
15. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
16. Coalescing into the 21st century: An overview and prospects of coalescent theory
17. Detecting bottlenecks and selective sweeps from DNA sequence polymorphism
18. Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis
19. Mitochondrial and nuclear genes present conflicting portraits of human origins
20. A coalescent estimator of the population recombination rate
21. Experimental phylogenetics: Generation of a known phylogeny
22. Estimating the recombination parameter of a finite population model without selection
23. Gene genealogies and the coalescent process
24. Deleterious background selection with recombination
25. A test of neutral molecular evolution based on nucleotide data
26. Pattern of nucleotide substitution at major histocompatibility complex class-1 loci reveals overdominant selection
27. Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans
28. The hitch-hiking effect of a favorable gene
29. Adaptive protein evolution at the Adh locus in Drosophila
30. The nearly neutral theory of molecular evolution
31. The probability of fixation in populations of changing size
32. Genealogies and weak purifying selection
33. Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans
34. DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
35. Estimates of linkage disequilibrium and the recombination parameter determined from segregating nucleotide sites in the alcohol dehydrogenase region of Drosophila pseudoobscura
36. Properties of statistical tests of neutrality for DNA polymorphism data
37. A test of the background selection hypothesis based on nucleotide data from Drosophila ananassae
38. Evolutionary relationship of DNA sequences in finite populations
39. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
40. Extensive amino acid polymorphism at the Pgm locus is consistent with adaptive protein evolution in Drosophila melanogaster
41. On the number of segregating sites in genetical models without recombination