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Volumn 57, Issue 2, 2004, Pages 269-278

Structure of an anti-DNA Fab complexed with a non-DNA ligand provides insights into cross-reactivity and molecular mimicry

Author keywords

Anti DNA antibodies; HEPES; Isothermal titration calorimetry; Molecular mimicry; Systemic lupus erythematosus; X ray crystallography

Indexed keywords

4 (2 HYDROXYETHYL) 1 PIPERAZINEETHANESULFONIC ACID; AMMONIUM SULFATE; ASPARAGINE; BUFFER; DNA ANTIBODY; DNA BASE; ETHYLENE; HISTIDINE; IMMUNOGLOBULIN F(AB) FRAGMENT; IMMUNOGLOBULIN LIGHT CHAIN; LIGAND; PIPERAZINE; SINGLE STRANDED DNA; SULFONIC ACID DERIVATIVE; THYMINE; THYMINE DERIVATIVE; TYROSINE;

EID: 4544339404     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20200     Document Type: Article
Times cited : (16)

References (57)
  • 3
    • 0025275488 scopus 로고
    • A role for immunogenic DNA in the pathogenesis of systemic lupus erythematosus
    • Pisetsky DS, Grudier JP, Gilkeson GS. A role for immunogenic DNA in the pathogenesis of systemic lupus erythematosus. Arthritis Rheum 1990;33:153-159.
    • (1990) Arthritis Rheum , vol.33 , pp. 153-159
    • Pisetsky, D.S.1    Grudier, J.P.2    Gilkeson, G.S.3
  • 4
    • 0039539926 scopus 로고
    • Avidity of anti-DNA antibodies in serum and IgG glomerular eluates from patients with systemic lupus erythematosus. Associations of high avidity antinative DNA antibody with glomerulonephritis
    • Winfield JB, Faiferman I, Koffler D. Avidity of anti-DNA antibodies in serum and IgG glomerular eluates from patients with systemic lupus erythematosus. Associations of high avidity antinative DNA antibody with glomerulonephritis. J Clin Invest 1991;59: 90-95.
    • (1991) J Clin Invest , vol.59 , pp. 90-95
    • Winfield, J.B.1    Faiferman, I.2    Koffler, D.3
  • 5
    • 0025868411 scopus 로고
    • Sulfated glycolipids are the platelet autoantigens for human platelet-binding monoclonal anti-DNA autoantibodies
    • Murakami H, Lam Z, Furie BC, Reinhold VN, Asano T, Furie B. Sulfated glycolipids are the platelet autoantigens for human platelet-binding monoclonal anti-DNA autoantibodies. J Biol Chem 1991;266:15414-15419.
    • (1991) J Biol Chem , vol.266 , pp. 15414-15419
    • Murakami, H.1    Lam, Z.2    Furie, B.C.3    Reinhold, V.N.4    Asano, T.5    Furie, B.6
  • 7
    • 0033180545 scopus 로고    scopus 로고
    • Anti-DNA autoantibodies and systemic lupus erythematosus
    • Blatt NB, Glick GD. Anti-DNA autoantibodies and systemic lupus erythematosus. Pharmacol Ther 1999;83:125-139.
    • (1999) Pharmacol Ther , vol.83 , pp. 125-139
    • Blatt, N.B.1    Glick, G.D.2
  • 8
    • 0025116451 scopus 로고
    • The role of anti-DNA antibodies in lupus nephritis
    • Waer M. The role of anti-DNA antibodies in lupus nephritis. Clin Rheumatol Suppl 1 1990;9:111-114.
    • (1990) Clin Rheumatol Suppl 1 , vol.9 , pp. 111-114
    • Waer, M.1
  • 9
    • 0028069658 scopus 로고
    • The origin, sequence, structure, and consequences of developing anti-DNA antibodies. A human perspective
    • Isenberg DA, Ehrenstein MR, Longhurst C, Kalsi JK. The origin, sequence, structure, and consequences of developing anti-DNA antibodies. A human perspective. Arthritis Rheum 1994;37:169-180.
    • (1994) Arthritis Rheum , vol.37 , pp. 169-180
    • Isenberg, D.A.1    Ehrenstein, M.R.2    Longhurst, C.3    Kalsi, J.K.4
  • 10
    • 0028096717 scopus 로고
    • Structure-function correlates of autoantibodies to nucleic acids. Lessons from immunochemical, genetic and structural studies
    • Eilat D, Anderson WF. Structure-function correlates of autoantibodies to nucleic acids. Lessons from immunochemical, genetic and structural studies. Mol Immunol 1994;31:1377-1390.
    • (1994) Mol Immunol , vol.31 , pp. 1377-1390
    • Eilat, D.1    Anderson, W.F.2
  • 11
    • 12244313937 scopus 로고    scopus 로고
    • Anti-DNA antibodies-structure and function
    • Rahman A, Kumar S, Potter KN. Anti-DNA antibodies-structure and function. Lupus 2002;11:776-779.
    • (2002) Lupus , vol.11 , pp. 776-779
    • Rahman, A.1    Kumar, S.2    Potter, K.N.3
  • 12
    • 0037298948 scopus 로고    scopus 로고
    • Anti-DNA antibodies: Aspects of structure and pathogenicity
    • Jang YJ, Stollar BD. Anti-DNA antibodies: aspects of structure and pathogenicity. Cell Mol Life Sci 2003;60:309-320.
    • (2003) Cell Mol Life Sci , vol.60 , pp. 309-320
    • Jang, Y.J.1    Stollar, B.D.2
  • 13
    • 0029073665 scopus 로고
    • Immunospecific reduction of antioligonucleotide antibody-forming cells with a tetrakis-oligonucleotide conjugate (LJP 394), a therapeutic candidate for the treatment of lupus nephritis
    • Jones DS, Barstad PA, Feild MJ, Hachmann JP, Hayag MS, Hill KW, Iverson GM, Livingston DA, Palanki MS, Tibbetts AR, et al. Immunospecific reduction of antioligonucleotide antibody-forming cells with a tetrakis-oligonucleotide conjugate (LJP 394), a therapeutic candidate for the treatment of lupus nephritis. J Med Chem 1995;38:2138-2144.
    • (1995) J Med Chem , vol.38 , pp. 2138-2144
    • Jones, D.S.1    Barstad, P.A.2    Feild, M.J.3    Hachmann, J.P.4    Hayag, M.S.5    Hill, K.W.6    Iverson, G.M.7    Livingston, D.A.8    Palanki, M.S.9    Tibbetts, A.R.10
  • 14
    • 0036949954 scopus 로고    scopus 로고
    • Workshop report on some new ideas about the treatment of systemic lupus erythematosus
    • Linnik M, Staines NA, Berden J, Isenberg DA. Workshop report on some new ideas about the treatment of systemic lupus erythematosus. Lupus 2002;11:793-796.
    • (2002) Lupus , vol.11 , pp. 793-796
    • Linnik, M.1    Staines, N.A.2    Berden, J.3    Isenberg, D.A.4
  • 15
    • 0025939121 scopus 로고
    • An autoantibody to single-stranded DNA: Comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex
    • Herron JN, He XM, Ballard DW, Blier PR, Pace PE, Bothwell ALM, Voss Jr. EW, Edmundson AB, An autoantibody to single-stranded DNA: Comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. Proteins 1991;11:159-175.
    • (1991) Proteins , vol.11 , pp. 159-175
    • Herron, J.N.1    He, X.M.2    Ballard, D.W.3    Blier, P.R.4    Pace, P.E.5    Bothwell, A.L.M.6    Voss Jr., E.W.7    Edmundson, A.B.8
  • 16
    • 0035824870 scopus 로고    scopus 로고
    • Crystal structure of an antigen-binding fragment bound to single-stranded DNA
    • Tanner JJ, Komissarov AA, Deutscher SL. Crystal structure of an antigen-binding fragment bound to single-stranded DNA. J Mol Biol 2001;314:807-822.
    • (2001) J Mol Biol , vol.314 , pp. 807-822
    • Tanner, J.J.1    Komissarov, A.A.2    Deutscher, S.L.3
  • 17
    • 0027729268 scopus 로고
    • Isolation and characterization of nucleic acid-binding antibody fragments from autoimmune mice-derived bacteriophage display libraries
    • Calcutt MJ, Kremer MT, Giblin MF, Quinn TP, Deutscher SL. Isolation and characterization of nucleic acid-binding antibody fragments from autoimmune mice-derived bacteriophage display libraries. Gene 1993;137:77-83.
    • (1993) Gene , vol.137 , pp. 77-83
    • Calcutt, M.J.1    Kremer, M.T.2    Giblin, M.F.3    Quinn, T.P.4    Deutscher, S.L.5
  • 18
    • 0030776843 scopus 로고    scopus 로고
    • Site-specific mutagenesis of a recombinant anti-single-stranded DNA Fab. Role of heavy chain complementarity-determining region 3 residues in antigen interaction
    • Komissarov AA, Marchbank MT, Calcutt MJ, Quinn TP, Deutscher SL. Site-specific mutagenesis of a recombinant anti-single-stranded DNA Fab. Role of heavy chain complementarity-determining region 3 residues in antigen interaction. J Biol Chem 1997;272:26864-26870.
    • (1997) J Biol Chem , vol.272 , pp. 26864-26870
    • Komissarov, A.A.1    Marchbank, M.T.2    Calcutt, M.J.3    Quinn, T.P.4    Deutscher, S.L.5
  • 19
    • 0033517851 scopus 로고    scopus 로고
    • Thermodynamics of Fab/DNA interactions: Contributions of heavy chain complementarity determining region 3
    • Komissarov AA, Deutscher SL. Thermodynamics of Fab/DNA interactions: Contributions of heavy chain complementarity determining region 3. Biochemistry 1999;38:14631-14637.
    • (1999) Biochemistry , vol.38 , pp. 14631-14637
    • Komissarov, A.A.1    Deutscher, S.L.2
  • 20
    • 0030063744 scopus 로고    scopus 로고
    • Ligand recognition by anti-DNA autoantibodies. Affinity, specificity, and mode of binding
    • Swanson PC, Ackroyd C, Glick GD. Ligand recognition by anti-DNA autoantibodies. Affinity, specificity, and mode of binding. Biochemistry 1996;35:1624-1633.
    • (1996) Biochemistry , vol.35 , pp. 1624-1633
    • Swanson, P.C.1    Ackroyd, C.2    Glick, G.D.3
  • 21
    • 0035814884 scopus 로고    scopus 로고
    • Thermodynamic basis for sequence-specific recognition of ssDNA by an autoantibody
    • Ackroyd PC, Cleary J, Glick GD. Thermodynamic basis for sequence-specific recognition of ssDNA by an autoantibody. Biochemistry 2001;40:2911-2922.
    • (2001) Biochemistry , vol.40 , pp. 2911-2922
    • Ackroyd, P.C.1    Cleary, J.2    Glick, G.D.3
  • 22
    • 0037435584 scopus 로고    scopus 로고
    • Mutational analysis of a sequence-specific ssDNA binding lupus autoantibody
    • Cleary J, Glick GD. Mutational analysis of a sequence-specific ssDNA binding lupus autoantibody. Biochemistry 2003;42:30-41.
    • (2003) Biochemistry , vol.42 , pp. 30-41
    • Cleary, J.1    Glick, G.D.2
  • 23
    • 0033869038 scopus 로고    scopus 로고
    • Crystallization and molecular replacement studies of a recombinant antigen-binding fragment complexed with single-stranded DNA
    • Prewitt SP, Komissarov AA, Deutscher SL, Tanner JJ. Crystallization and Molecular Replacement Studies of a Recombinant Antigen-Binding Fragment Complexed with Single-stranded DNA. Acta Crystallogr D Biol Crystallogr 2000;56:1007-1011.
    • (2000) Acta Crystallogr D Biol Crystallogr , vol.56 , pp. 1007-1011
    • Prewitt, S.P.1    Komissarov, A.A.2    Deutscher, S.L.3    Tanner, J.J.4
  • 24
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 25
    • 0000952473 scopus 로고
    • On the treatment of negative intensity observations
    • French GS, Wilson KS. On the treatment of negative intensity observations. Acta Crystallogr A 1978;34:517-525.
    • (1978) Acta Crystallogr A , vol.34 , pp. 517-525
    • French, G.S.1    Wilson, K.S.2
  • 26
    • 0028103275 scopus 로고
    • The CCP4 Suite: Programs for protein crystallography
    • CCP4. The CCP4 Suite: Programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994;50:760-763.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , pp. 760-763
  • 27
    • 0031053055 scopus 로고    scopus 로고
    • AMoRE: An automated molecular replacement program package
    • Navaza J, Saludjian P. AMoRE: An automated molecular replacement program package. Meth Enzymol 1997;276:581-594.
    • (1997) Meth Enzymol , vol.276 , pp. 581-594
    • Navaza, J.1    Saludjian, P.2
  • 29
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 1991;47:110-119.
    • (1991) Acta Crystallogr A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.-Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 30
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh RA, Huber R. Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr A 1991;47:392-400.
    • (1991) Acta Crystallogr A , vol.47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2
  • 31
    • 12644299138 scopus 로고
    • Solvent model for protein crystals: On occupancy parameters for discrete solvent sites and the solvent continuum
    • Jensen LH. Solvent model for protein crystals: on occupancy parameters for discrete solvent sites and the solvent continuum. Acta Crystallogr B 1990;46:650-653.
    • (1990) Acta Crystallogr B , vol.46 , pp. 650-653
    • Jensen, L.H.1
  • 33
    • 0032144872 scopus 로고    scopus 로고
    • Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: A thermodynamic study of ligand binding to protein tyrosine phosphatase IB
    • Zhang YL, Zhang ZY. Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: a thermodynamic study of ligand binding to protein tyrosine phosphatase IB. Anal Biochem 1998;261:139-148.
    • (1998) Anal Biochem , vol.261 , pp. 139-148
    • Zhang, Y.L.1    Zhang, Z.Y.2
  • 34
    • 0001897686 scopus 로고
    • Assessment of phase accuracy by cross validation: The free R value. Methods and applications
    • Brünger AT. Assessment of phase accuracy by cross validation: the free R value. Methods and applications. Acta Crystallogr D Biol Crystallogr 1993;49:24-36.
    • (1993) Acta Crystallogr D Biol Crystallogr , vol.49 , pp. 24-36
    • Brünger, A.T.1
  • 35
    • 0001099937 scopus 로고
    • Traitement statistique des erreurs dans la determination des structures cristallines
    • Luzzati PV. Traitement statistique des erreurs dans la determination des structures cristallines. Acta Crystallogr 1952;5:802-810.
    • (1952) Acta Crystallogr , vol.5 , pp. 802-810
    • Luzzati, P.V.1
  • 36
    • 84944812409 scopus 로고
    • Improved fourier coefficents for maps using phases from partial structures with errors
    • Read RJ. Improved fourier coefficents for maps using phases from partial structures with errors. Acta Crystallogr A 1986;42:140-149.
    • (1986) Acta Crystallogr A , vol.42 , pp. 140-149
    • Read, R.J.1
  • 39
    • 0029993902 scopus 로고    scopus 로고
    • Accessing the Kabat antibody sequence database by computer
    • Martin AC. Accessing the Kabat antibody sequence database by computer. Proteins 1996;25:130-133.
    • (1996) Proteins , vol.25 , pp. 130-133
    • Martin, A.C.1
  • 41
    • 0018654090 scopus 로고
    • Three-dimensional structure of immunoglobulins
    • Amzel LM, Poljak RJ. Three-dimensional structure of immunoglobulins. Ann Rev Biochem 1979;48:961-997.
    • (1979) Ann Rev Biochem , vol.48 , pp. 961-997
    • Amzel, L.M.1    Poljak, R.J.2
  • 43
    • 15844404575 scopus 로고    scopus 로고
    • Equilibrium binding studies of recombinant anti-single-stranded DNA Fab. Role of heavy chain complementarity-determining regions
    • Komissarov AA, Calcutt MJ, Marchbank MT, Peletskaya EN, Deutscher SL. Equilibrium binding studies of recombinant anti-single-stranded DNA Fab. Role of heavy chain complementarity-determining regions. J Biol Chem 1996;271:12241-12246.
    • (1996) J Biol Chem , vol.271 , pp. 12241-12246
    • Komissarov, A.A.1    Calcutt, M.J.2    Marchbank, M.T.3    Peletskaya, E.N.4    Deutscher, S.L.5
  • 44
    • 0023816089 scopus 로고
    • Specific inhibition of the DNA-anti-DNA immune reaction by low molecular weight anionic compounds
    • Ben-Chetrit E, Eilat D, Ben-Sasson SA. Specific inhibition of the DNA-anti-DNA immune reaction by low molecular weight anionic compounds. Immunology 1988;65:479-485.
    • (1988) Immunology , vol.65 , pp. 479-485
    • Ben-Chetrit, E.1    Eilat, D.2    Ben-Sasson, S.A.3
  • 45
    • 0033038935 scopus 로고    scopus 로고
    • Molecular mimicry between bacterial and self antigen in a patient with systemic lupus erythematosus
    • Kowal C, Weinstein A, Diamond B. Molecular mimicry between bacterial and self antigen in a patient with systemic lupus erythematosus. Eur J Immunol 1999;29:1901-1911.
    • (1999) Eur J Immunol , vol.29 , pp. 1901-1911
    • Kowal, C.1    Weinstein, A.2    Diamond, B.3
  • 46
    • 0034953516 scopus 로고    scopus 로고
    • Crossreactivity of human anti-dsDNA antibodies to phosphorylcholine: Clues to their origin
    • Sharma A, Isenberg DA, Diamond B. Crossreactivity of human anti-dsDNA antibodies to phosphorylcholine: clues to their origin. J Autoimmun 2001;16:479-484.
    • (2001) J Autoimmun , vol.16 , pp. 479-484
    • Sharma, A.1    Isenberg, D.A.2    Diamond, B.3
  • 49
    • 0035173156 scopus 로고    scopus 로고
    • A subset of lupus anti-DNA antibodies cross-reacts with the NR2 glutamate receptor in systemic lupus erythemato-BUS
    • DeGiorgio LA, Konstantinov KN, Lee SC, Hardin JA, Volpe BT, Diamond B. A subset of lupus anti-DNA antibodies cross-reacts with the NR2 glutamate receptor in systemic lupus erythemato-BUS. Nat Med 2001;7:1189-1193.
    • (2001) Nat Med , vol.7 , pp. 1189-1193
    • DeGiorgio, L.A.1    Konstantinov, K.N.2    Lee, S.C.3    Hardin, J.A.4    Volpe, B.T.5    Diamond, B.6
  • 50
    • 0030910657 scopus 로고    scopus 로고
    • Mimotopes of polyreactive anti-DNA antibodies identified using phage-display peptide libraries
    • Sibille P, Ternynck T, Nato F, Buttin G, Strosberg D, Avrameas A. Mimotopes of polyreactive anti-DNA antibodies identified using phage-display peptide libraries. Eur J Immunol 1997;27:1221-1228.
    • (1997) Eur J Immunol , vol.27 , pp. 1221-1228
    • Sibille, P.1    Ternynck, T.2    Nato, F.3    Buttin, G.4    Strosberg, D.5    Avrameas, A.6
  • 51
    • 0031664697 scopus 로고    scopus 로고
    • Molecular mimicry and immune-mediated diseases
    • Oldstone MB. Molecular mimicry and immune-mediated diseases. FASEB J 1998;12:1255-1265.
    • (1998) FASEB J , vol.12 , pp. 1255-1265
    • Oldstone, M.B.1
  • 52
    • 0030584886 scopus 로고    scopus 로고
    • Structural elements controlling anti-DNA antibody affinity and their relationship to anti-phosphorylcholine activity
    • Pewzner-Jung Y, Simon T, Eilat D. Structural elements controlling anti-DNA antibody affinity and their relationship to anti-phosphorylcholine activity. J Immunol 1996;156:3065-3073.
    • (1996) J Immunol , vol.156 , pp. 3065-3073
    • Pewzner-Jung, Y.1    Simon, T.2    Eilat, D.3
  • 53
    • 0029933460 scopus 로고    scopus 로고
    • Pathogenic autoantibodies are routinely generated during the response to foreign antigen: A paradigm for autoimmune disease
    • Ray SK, Putterman C, Diamond B. Pathogenic autoantibodies are routinely generated during the response to foreign antigen: a paradigm for autoimmune disease. Proc Natl Acad Sci USA 1996;93:2019-2024.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 2019-2024
    • Ray, S.K.1    Putterman, C.2    Diamond, B.3
  • 54
  • 55
    • 0030729838 scopus 로고    scopus 로고
    • An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
    • Esnouf RM. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J Mol Graph Model 1997;15:132-134.
    • (1997) J Mol Graph Model , vol.15 , pp. 132-134
    • Esnouf, R.M.1
  • 56
    • 0028057108 scopus 로고
    • Raster3D Version 2.0: A program for photorealistic molecular graphics
    • Merritt EA, Murphy MEP. Raster3D Version 2.0: A program for photorealistic molecular graphics. Acta Crystallogr D Biol Crystallogr 1994;50:869-873.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.P.2


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