Thermodynamics of Fab-ssDNA interactions: Contribution of heavy chain complementarity determining region 3

Biochemistry

Volumn 38, Issue 44, 1999, Pages 14631-14637

  Komissarov, Andrey A ^a,b   Deutscher, Susan L ^a  

^a University of Missouri   (United States)

^b HENRY FORD HEALTH SCIENCES CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN F(AB) FRAGMENT; IMMUNOGLOBULIN HEAVY CHAIN; SINGLE STRANDED DNA;

ARTICLE; AUTOIMMUNITY; COMPLEMENTARITY DETERMINING REGION; DNA PROTEIN COMPLEX; DNA PURIFICATION; ENTROPY; GENETIC ENGINEERING; IMMUNOGLOBULIN VARIABLE REGION; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; SYSTEMIC LUPUS ERYTHEMATOSUS; THERMODYNAMICS;

ANIMALS; ANTIBODIES, ANTINUCLEAR; BINDING SITES; DNA, SINGLE-STRANDED; ELECTROSTATICS; IMMUNOGLOBULIN FAB FRAGMENTS; IMMUNOGLOBULIN HEAVY CHAINS; IMMUNOGLOBULIN VARIABLE REGION; KINETICS; MICE; MUTAGENESIS, SITE-DIRECTED; MUTATION; RECOMBINANT PROTEINS; THERMODYNAMICS;

EID: 0033517851     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991347l     Document Type: Article

References (61)

1. Chothia, C., and Lesk, A. M. (1987) J. Mol. Biol. 196, 901-917.
2. Schwartz, R. S., and Stollar, B. D. (1985) J. Clin. Invest. 75, 321-332.
3. Tan, E. M. (1989) Adv. Immunol. 44, 93-152.
4. Pisetsky, D. S., Grudier, J. P., and Gilkenson, G. S. (1990) Arth. Rheum. 33, 153-159.
5. Winfield, J. B., Faiferman, I., and Koffler, D. (1991) J. Clin. Invest. 59, 90-95.
6. Swanson, P. C., Yung, R. L., Blatt, N. B., Eagan, M. A., Norris, J. M., Richardson, B. C., Johnson, K. J., and Glick, G. D. (1996) J. Clin. Invest. 97, 1748-1760.
7. Eilat, D., and Anderson, W. F. (1994) Mol. Immunol. 31, 1377-1390.
8. Barry, M. M., Mol, C. D., Anderson, W. F., and Lee, J. S. (1994) J. Biol. Chem. 269, 3623-3632.
9. Cygler, M., Boodhoo, A., Lee, J. S., and Anderson, W. F. (1987) J. Biol. Chem. 262, 643-648.
10. Herron, J. N., He, X. M., Ballard, D. W., Blier, P. R., Pace, P. E., Bothwell, A. L. M., Voss, E. W., Jr., and Edmundson, A. B. (1991) Proteins: Struct., Funct., Genet. 11, 159-175.
11. Mol, C. D., Muir, A. K. S., Lee, J. S., and Anderson, W. F. (1994) J. Biol. Chem. 269, 3605-3614.
12. Mol, C. D., Muir, A. K. S., Cygler, M., Lee, J. S., and Anderson, W. F. (1994) J. Biol. Chem. 269, 3615-3622.
13. Padlan, E. A. (1994) Mol. Immunol. 31, 169-217.
14. Nadassy, K., Wodak, S. J., and Janin, J. (1999) Biochemistry 38, 1999-2017.
15. Tanha, J., and Lee, J. S. (1997) Nucleic Acids Res. 25, 1442-1449.
16. Gulliver, G. A., Bedzyk, W. D., Smith, R. G., Bode, S. L., Tetin, S. Y., and Voss, E. W. (1994) J. Biol. Chem. 269, 7934-7940.
17. Gulliver, G. A., Rumbley, C. A., Carrero, J., and Voss, E. W., Jr. (1995) Biochemistry 34, 5158-5163.
18. Calcutt, M. J., Komissarov, A. A., Marchbank, M. T., and Deutscher, S. L. (1996) Gene 168, 9-14.
19. Komissarov, A. A., Calcutt, M. J., Marchbank, M. T., Peletskaya, E. N., and Deutscher, S. L. (1996) J. Biol. Chem. 271, 12241-12246.
20. Barbas, S. M., Ditzel, H. J., Salonen, E. M., Yang, W., Silverman, G. J., and Burton, D. R. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 2529-2533.
21. Pewzner-Jung, Y., Simon, T., and Eilat, D. (1996) J. Immunol. 154, 2198-2208.
22. Barbas, S. M., Ghazal, P., Barbas, C. F., III, and Burton, D. R. (1994) J. Am. Chem. Soc. 116, 2161-2162.
23. Chothia, C., Lesk, A. M., Tramontano, A., Levitt, M., Smith-Gill, S., Air, G., Sheriff, S., Padlan, E., Davies, D., Tulip, W., Colman, P., Spinelli, S., Alzari, P., and Poljak, R. (1989) Nature 342, 877-883.
24. Al-Lazikani, B., Lesk, A. M., and Chothia, C. (1997) J. Mol. Biol. 273, 927-948.
25. Morea, V., Tramontano, A., Rustici, M., Chothia, C., and Lesk, A. M. (1998) J. Mol. Biol. 275, 269-294.
26. Calcutt, M. J., Kremer, M. T., Giblin, M. F., Quinn, T. P., and Deutscher, S. L., (1993) Gene 137, 77-83.
27. Deutscher, S. L., Crider, M. E., Ringbauer, J., Komissarov, A. A., and Quinn, T. P. (1996) Arch. Biochem. Biophys. 333, 207-213.
28. Komissarov, A. A., Marchbank, M. T., and Deutscher, S. L. (1997) Anal. Biochem. 247, 123-129.
29. Komissarov, A. A., Marchbank, M. T., Calcutt, M. J., Quinn, T. P., and Deutscher, S. L. (1997) J. Biol. Chem. 272, 26864-26870.
30. Laemmli, U. K. (1971) Nature 227, 680-685.
31. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., and Klenk, D. C. (1985) Anal. Biochem. 150, 76-85.
32. Overman, L. B., Bujalowski, W., and Lohman, T. M. (1988) Biochemistry 27, 456-471.
33. Lohman, T. M., and Mascotti, D. P. (1992) Methods Enzymol. 212, 424-458.
34. Good, N. E., Winget, G. D., Winter, W., Connolly, T. N., Izava, S., and Singh, R. M. (1966) Biochemistry 5, 467-477.
35. Record, M. T., Lohman, T. M., and De Haseth, P. L. (1976) J. Mol. Biol. 107, 145-158.
36. Record, M. T., Jr., Woodbury, C. P., and Lohman, T. M. (1976) Biopolymers 15, 893-915.
37. Mascotti, D. P., and Lohman, T. M. (1993) Biochemistry 32, 10568-10579.
38. Carter, P. J., Winter, G., Wilkinson, A. J., and Fersht, A. R. (1984) Cell 38, 835-840.
39. Lee, J. S., Dombroski, D. F., and Mosmann, T. R. (1982) Biochemistry 21, 4940-4945.
40. Rumbley, C. A., Denzin, L. K., Yantz, L., Tetin, S. Yu., and Voss, E. W., Jr. (1993) J. Biol. Chem. 268, 13667-13674.
41. Swanson, P. C., Ackroyd, C., and Glick, G. D. (1996) Biochemistry 35, 1624-1633.
42. McGhee, J. D., and von Hippel, P. H. (1974) J. Mol. Biol. 86, 469-489.
43. Zhang, W., Bond, J. P., Anderson, C. F., Lohman, T. M., and Record, M. T., Jr. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 2511-2516.
44. Brummell, D. A., Sharma, V. P., Anand, N. N., Bilous, D., Dubic, G., Michniewicz, J., MacKenzie, C. R., Sadowska, J., Sigurskjold, B. W., Sinnott, B., Young, N. M., Bundle, D. R., and Narang, S. A. (1993) Biochemistry 32, 1180-1187.
45. Sturtevant, J. M. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 2236-2240.
46. De Haseth, P. L., Lohman, T. M., and Record, M. T. (1977) Biochemistry 16, 4783-4790.
47. Lohman, T. M., and Mascotti, D. P. (1992) Methods Enzymol. 212, 400-424.
48. Swanson, P. C., Copper, B. C., and Glick, G. D. (1994) J. Immunol. 152, 2601-2612.
49. Lohman, T. M., and Ferrari, M. E. (1994) Annu. Rev. Biochem. 63, 527-570.
50. Ferrari, M. E., and Lohman, T. M. (1994) Biochemistry 33, 12896-12910.
51. Kozlov, A. G., and Lohman, T. M. (1999) Biochemistry 38, 7388-7397.
52. Sang, B., and Gray, D. M. (1989) J. Biomol. Struct. Dyn. 7, 693-706.
53. Satow, Y., Cohen, G., Padlan, E. A., and Davies, D. R. (1986) J. Mol. Biol. 190, 593-604.
54. Panka, D. J., Mudgett-Hunter, M., Parks, D. R., Peterson, L. L., Herzenberg, L. A., Haber, E., and Margolies, M. N. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 3080-3084.
55. Chien, N. C., Roberts, V. A., Giusti, A. M., Scharff, M. D., and Getzoff, E. D. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 5532-5536.
56. Ito, W., Iba, Y., and Kurosawa, Y. (1993) J. Biol. Chem. 268, 16639-16647.
57. Radic, M. Z., Mackle, J., Erikson, C., Mol, W. F., and Weigert, M. (1993) J. Immunol. 150, 4966-4977.
58. Kawaguchi, S., and Kuramitsu, S. (1998) J. Biol. Chem. 273, 18353-18364.
59. Barford, D., Hu, S.-H., and Johnson, L. N. (1991) J. Mol. Biol. 218, 233-260.
60. Ysern, X., Fields, B. A., Bhat, T. N., Goldbaum, F. A., Dall'Acqua, W., Schwarz, F. P., Poljak, R. J., and Mariuzza, R. A. (1994) J. Mol. Biol. 238, 496-500.
61. Chothia, C. (1974) Nature 248, 338-339.