-
1
-
-
0027432916
-
A deletion mutant of the type IC restriction endonuclease EcoR124I expressing a novel DNA specificity
-
Abadjieva, A., J. Patel, M. Webb, V. Zinkevich, and K. Firman. 1993. A deletion mutant of the type IC restriction endonuclease EcoR124I expressing a novel DNA specificity. Nucleic Acids Res. 21:4435-4443.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4435-4443
-
-
Abadjieva, A.1
Patel, J.2
Webb, M.3
Zinkevich, V.4
Firman, K.5
-
2
-
-
0041385607
-
Characterisation of an EcoR124I DNA restriction-modification enzyme produced from a deleted form of the DNA-binding subunit, which results in a novel DNA specificity
-
Abadjieva, A., G. Scarlett, P. Janscák, C. F. Dutta, and K. Firman. 2003. Characterisation of an EcoR124I DNA restriction-modification enzyme produced from a deleted form of the DNA-binding subunit, which results in a novel DNA specificity. Folia Microbiol. 48:319-328.
-
(2003)
Folia Microbiol
, vol.48
, pp. 319-328
-
-
Abadjieva, A.1
Scarlett, G.2
Janscák, P.3
Dutta, C.F.4
Firman, K.5
-
3
-
-
0014462494
-
DNA modification and restriction
-
Arber, W., and S. Linn. 1969. DNA modification and restriction. Annu. Rev. Biochem. 38:467-500.
-
(1969)
Annu. Rev. Biochem
, vol.38
, pp. 467-500
-
-
Arber, W.1
Linn, S.2
-
4
-
-
0022069354
-
Evidence for a repeating domain in type I restriction enzymes
-
Argos, P. 1983. Evidence for a repeating domain in type I restriction enzymes. EMBO J. 4:1351-1355.
-
(1983)
EMBO J
, vol.4
, pp. 1351-1355
-
-
Argos, P.1
-
5
-
-
44949253531
-
-
PhD thesis. University of Edinburgh, Edinburgh, United Kingdom
-
Bannister, D. 1969. PhD thesis. University of Edinburgh, Edinburgh, United Kingdom.
-
(1969)
-
-
Bannister, D.1
-
7
-
-
0033918211
-
Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy
-
Berge, T., D. J. Ellis, D. T. Dryden, J. M. Edwardson, and R. M. Henderson. 2000. Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy. Biophys. J. 79:479-484.
-
(2000)
Biophys. J
, vol.79
, pp. 479-484
-
-
Berge, T.1
Ellis, D.J.2
Dryden, D.T.3
Edwardson, J.M.4
Henderson, R.M.5
-
8
-
-
0017082834
-
A restriction endonuclease analysis of the bacterial plasmid controlling the EcoRI restriction and modification of DNA
-
Betlach, M., V. Hershfield, and B. Vickers. 1976. A restriction endonuclease analysis of the bacterial plasmid controlling the EcoRI restriction and modification of DNA. Fed. Proc. Fed. Ann. Soc. Exp. Biol. 35:2037-2043.
-
(1976)
Fed. Proc. Fed. Ann. Soc. Exp. Biol
, vol.35
, pp. 2037-2043
-
-
Betlach, M.1
Hershfield, V.2
Vickers, B.3
-
9
-
-
33646418420
-
Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination
-
Blakely, G. W., and N. E. Murray. 2006. Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination. Mol. Microbiol. 60:883-893.
-
(2006)
Mol. Microbiol
, vol.60
, pp. 883-893
-
-
Blakely, G.W.1
Murray, N.E.2
-
10
-
-
0015192625
-
DNA restriction and modification mechanisms in bacteria
-
Boyer, H. 1971. DNA restriction and modification mechanisms in bacteria. Annu. Rev. Microbiol. 25:153-176.
-
(1971)
Annu. Rev. Microbiol
, vol.25
, pp. 153-176
-
-
Boyer, H.1
-
11
-
-
0001671123
-
Genetic control of restriction and modification in Escherichia coli
-
Boyer, H. 1964. Genetic control of restriction and modification in Escherichia coli. J. Bacteriol. 88:1652-1660.
-
(1964)
J. Bacteriol
, vol.88
, pp. 1652-1660
-
-
Boyer, H.1
-
12
-
-
23444459393
-
Crystal structure of a putative type I restriction- modification S subunit from Mycoplasma genitalium
-
Calisto, B. M., O. Q. Pich, J. Pinol, I. Fita, E. Querol, and X. Carpena. 2005. Crystal structure of a putative type I restriction- modification S subunit from Mycoplasma genitalium. J. Mol. Biol. 351:749-762.
-
(2005)
J. Mol. Biol
, vol.351
, pp. 749-762
-
-
Calisto, B.M.1
Pich, O.Q.2
Pinol, J.3
Fita, I.4
Querol, E.5
Carpena, X.6
-
13
-
-
0022368885
-
A restriction map of IncFIV plasmid R124
-
Campbell, I. G., and B. J. Mee. 1985. A restriction map of IncFIV plasmid R124. Plasmid 14:261-263.
-
(1985)
Plasmid
, vol.14
, pp. 261-263
-
-
Campbell, I.G.1
Mee, B.J.2
-
14
-
-
0035147536
-
The proteolytic control of restriction activity in Escherichia coli K-12
-
Doronina, V. A., and N. E. Murray. 2001. The proteolytic control of restriction activity in Escherichia coli K-12. Mol. Microbiol. 39:416-428.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 416-428
-
-
Doronina, V.A.1
Murray, N.E.2
-
15
-
-
0029942481
-
ATPase activity of the type 1C restriction-modification system EcoR124II
-
Dreier, J., and T. A. Bickle. 1996. ATPase activity of the type 1C restriction-modification system EcoR124II. J. Mol. Biol. 257:960-969.
-
(1996)
J. Mol. Biol
, vol.257
, pp. 960-969
-
-
Dreier, J.1
Bickle, T.A.2
-
16
-
-
0030582726
-
DNA cleavage by the type IC restriction-modification enzyme EcoR1241I
-
Dreier, J., M. P. MacWilliams, and T. A. Bickle. 1996. DNA cleavage by the type IC restriction-modification enzyme EcoR1241I. J. Mol. Biol. 264:722-733.
-
(1996)
J. Mol. Biol
, vol.264
, pp. 722-733
-
-
Dreier, J.1
MacWilliams, M.P.2
Bickle, T.A.3
-
17
-
-
0020636493
-
Genetic and physical studies of restriction-deficient mutants of the IncFIV Plasmids R124 and R124/3
-
Firman, K., W. A. Creasey, G. Watson, C. Price, and S. W. Glover. 1983. Genetic and physical studies of restriction-deficient mutants of the IncFIV Plasmids R124 and R124/3. Mol. Gen. Genet. 191:145-153.
-
(1983)
Mol. Gen. Genet
, vol.191
, pp. 145-153
-
-
Firman, K.1
Creasey, W.A.2
Watson, G.3
Price, C.4
Glover, S.W.5
-
18
-
-
0002458947
-
The role of subunit assembly in the functional control of type I restriction- modification enzymes
-
Firman, K., C. Dutta, M. Weiserova, and P. Janscak. 2000. The role of subunit assembly in the functional control of type I restriction- modification enzymes. Mol. Biol. Today 1:1-8.
-
(2000)
Mol. Biol. Today
, vol.1
, pp. 1-8
-
-
Firman, K.1
Dutta, C.2
Weiserova, M.3
Janscak, P.4
-
19
-
-
0022338925
-
The EcoR124 and EcoR124/3 restriction and modification systems: Cloning the genes
-
Firman, K., C. Price, and S. W. Glover. 1985. The EcoR124 and EcoR124/3 restriction and modification systems: cloning the genes. Plasmid 14:224-234.
-
(1985)
Plasmid
, vol.14
, pp. 224-234
-
-
Firman, K.1
Price, C.2
Glover, S.W.3
-
20
-
-
0034595208
-
Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex dissociation
-
Firman, K., and M. Szczelkun. 2000. Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex dissociation. EMBO J. 19:2094-2102.
-
(2000)
EMBO J
, vol.19
, pp. 2094-2102
-
-
Firman, K.1
Szczelkun, M.2
-
21
-
-
44949113731
-
-
Firman, K., and University of Newcastle upon Tyne. 1982. The restriction and modification systems coded by the bacterial plasmid R124. University of Newcastle upon Tyne, Newcastle upon Tyne, United Kingdom.
-
Firman, K., and University of Newcastle upon Tyne. 1982. The restriction and modification systems coded by the bacterial plasmid R124. University of Newcastle upon Tyne, Newcastle upon Tyne, United Kingdom.
-
-
-
-
22
-
-
0035313855
-
Mechanisms for ATP-dependent chromatin remodelling
-
Flaus, A., and T. Owen-Hughes. 2001. Mechanisms for ATP-dependent chromatin remodelling. Curr. Opin. Genet. Dev. 11:148-154.
-
(2001)
Curr. Opin. Genet. Dev
, vol.11
, pp. 148-154
-
-
Flaus, A.1
Owen-Hughes, T.2
-
23
-
-
0021716468
-
Genetic recombination can generate altered restriction specificity
-
Fuller-Pace, F. V., L. R. Bullas, H. Delius, and N. E. Murray. 1984. Genetic recombination can generate altered restriction specificity. Proc. Natl. Acad. Sci. USA 81:6095-6099.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 6095-6099
-
-
Fuller-Pace, F.V.1
Bullas, L.R.2
Delius, H.3
Murray, N.E.4
-
24
-
-
0022919465
-
Two DNA recognition domains of the specificity polypeptides of a family of the type I restriction enzymes
-
Fuller-Pace, F. V., and N. E. Murray. 1986. Two DNA recognition domains of the specificity polypeptides of a family of the type I restriction enzymes. Proc. Natl. Acad. Sci. USA 83:9368-9372.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 9368-9372
-
-
Fuller-Pace, F.V.1
Murray, N.E.2
-
25
-
-
0023373869
-
Reassortment of DNA recognition domains and the evolution of new specificities
-
Gann, A. F. F., A. J. B. Campbell, J. F. Collins, A. F. W. Coulson, and N. E. Murray. 1987. Reassortment of DNA recognition domains and the evolution of new specificities. Mol. Microbiol. 1:13-22.
-
(1987)
Mol. Microbiol
, vol.1
, pp. 13-22
-
-
Gann, A.F.F.1
Campbell, A.J.B.2
Collins, J.F.3
Coulson, A.F.W.4
Murray, N.E.5
-
26
-
-
0033607255
-
Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI
-
García, L. R., and I. J. Molineux. 1999. Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI. Proc. Natl. Acad. Sci. USA 96:12430-12435.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 12430-12435
-
-
García, L.R.1
Molineux, I.J.2
-
27
-
-
0014766984
-
Functional analysis of host-specificity mutants in Escherichia coli
-
Glover, S. W. 1970. Functional analysis of host-specificity mutants in Escherichia coli. Genet. Res. (Cambridge) 15:237-250.
-
(1970)
Genet. Res. (Cambridge)
, vol.15
, pp. 237-250
-
-
Glover, S.W.1
-
28
-
-
0014504167
-
Genetics of host-controlled restriction and modification in Escherichia coli
-
Glover, S. W., and C. Colson. 1969. Genetics of host-controlled restriction and modification in Escherichia coli. Genet. Res. (Cambridge) 13:227-240.
-
(1969)
Genet. Res. (Cambridge)
, vol.13
, pp. 227-240
-
-
Glover, S.W.1
Colson, C.2
-
29
-
-
44949236600
-
Genetic control of DNA specificity
-
U. N. Streips, S. H. Goodgal, W. R. Guild, and G. A. Wilson ed, Marcel Dekker, New York, NY
-
Glover, S. W., and K. Firman. 1982. Genetic control of DNA specificity, p. 331-338. In U. N. Streips, S. H. Goodgal, W. R. Guild, and G. A. Wilson (ed.), Genetic exchange. Marcel Dekker, New York, NY.
-
(1982)
Genetic exchange
, pp. 331-338
-
-
Glover, S.W.1
Firman, K.2
-
30
-
-
0020633250
-
The alternate expression of two restriction and modification systems
-
Glover, S. W., K. Firman, G. Watson, C. Price, and S. Donaldson. 1983. The alternate expression of two restriction and modification systems. Mol. Gen. Genet. 190:65-69.
-
(1983)
Mol. Gen. Genet
, vol.190
, pp. 65-69
-
-
Glover, S.W.1
Firman, K.2
Watson, G.3
Price, C.4
Donaldson, S.5
-
31
-
-
34347266453
-
High-resolution, single-molecule measurements of biomolecular motion
-
Greenleaf, W. J., M. T. Woodside, and S. M. Block. 2007. High-resolution, single-molecule measurements of biomolecular motion. Annu. Rev. Biophys. Biomol. Struct. 36:171-190.
-
(2007)
Annu. Rev. Biophys. Biomol. Struct
, vol.36
, pp. 171-190
-
-
Greenleaf, W.J.1
Woodside, M.T.2
Block, S.M.3
-
32
-
-
0026086672
-
Increased protein flexibility leads to promiscuous protein-DNA interactions in type IC restriction- modification systems
-
Gubler, M., and T. A. Bickle. 1991. Increased protein flexibility leads to promiscuous protein-DNA interactions in type IC restriction- modification systems. EMBO J. 10:951-957.
-
(1991)
EMBO J
, vol.10
, pp. 951-957
-
-
Gubler, M.1
Bickle, T.A.2
-
33
-
-
0026540803
-
Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction-modification enzymes
-
Gubler, M., D. Braguglia, J. Meyer, A. Piekarowicz, and T. A. Bickle. 1992. Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction-modification enzymes. EMBO J. 11:233-240.
-
(1992)
EMBO J
, vol.11
, pp. 233-240
-
-
Gubler, M.1
Braguglia, D.2
Meyer, J.3
Piekarowicz, A.4
Bickle, T.A.5
-
35
-
-
2642579051
-
Cellular localization of type I restriction-modification enzymes is family dependent
-
Holubova, I., S. Vejsadova, K. Firman, and M. Weiserova. 2004. Cellular localization of type I restriction-modification enzymes is family dependent. Biochem. Biophys. Res. Commun. 319:375-380.
-
(2004)
Biochem. Biophys. Res. Commun
, vol.319
, pp. 375-380
-
-
Holubova, I.1
Vejsadova, S.2
Firman, K.3
Weiserova, M.4
-
36
-
-
0034595072
-
Localisation of the type I restriction-modification enzyme EcoKI in the bacterial cell
-
Holubová, I., S. Vejsadová, M. Weiserová, and K. Firman. 2000. Localisation of the type I restriction-modification enzyme EcoKI in the bacterial cell. Biochem. Biophys. Res. Commun. 270:46-51.
-
(2000)
Biochem. Biophys. Res. Commun
, vol.270
, pp. 46-51
-
-
Holubová, I.1
Vejsadová, S.2
Weiserová, M.3
Firman, K.4
-
37
-
-
0014966053
-
Complementation analysis of temperature-sensitive host specificity mutations in Escherichia coli
-
Hubácek, J., and S. W. Glover. 1970. Complementation analysis of temperature-sensitive host specificity mutations in Escherichia coli. J. Mol. Biol. 50:111-127.
-
(1970)
J. Mol. Biol
, vol.50
, pp. 111-127
-
-
Hubácek, J.1
Glover, S.W.2
-
38
-
-
0024448107
-
The location of a temperature-sensitive trans-dominant mutation and its effect on restriction and modification in Escherichia coli K12
-
Hubácek, J., V. E. Zinkevich, and M. Weiserová. 1989. The location of a temperature-sensitive trans-dominant mutation and its effect on restriction and modification in Escherichia coli K12. J. Gen. Microbiol. 135:3057-3065.
-
(1989)
J. Gen. Microbiol
, vol.135
, pp. 3057-3065
-
-
Hubácek, J.1
Zinkevich, V.E.2
Weiserová, M.3
-
40
-
-
0024278335
-
Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon the EcoP15 mod gene and some EcoP1 mod mutants
-
Hümbelin, M., B. Suri, D. N. Rao, D. P. Hornby, H. Eberle, T. Pripfl, S. Kenel, and T. A. Bickle. 1988. Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon the EcoP15 mod gene and some EcoP1 mod mutants. J. Mol. Biol. 200:23-29.
-
(1988)
J. Mol. Biol
, vol.200
, pp. 23-29
-
-
Hümbelin, M.1
Suri, B.2
Rao, D.N.3
Hornby, D.P.4
Eberle, H.5
Pripfl, T.6
Kenel, S.7
Bickle, T.A.8
-
41
-
-
0029968248
-
The type I restriction endonuclease R.EcoR124I: Over-production and biochemical properties
-
Janscák, P., A. Abadjieva, and K. Firman. 1996. The type I restriction endonuclease R.EcoR124I: over-production and biochemical properties. J. Mol. Biol. 257:977-991.
-
(1996)
J. Mol. Biol
, vol.257
, pp. 977-991
-
-
Janscák, P.1
Abadjieva, A.2
Firman, K.3
-
42
-
-
0034723157
-
DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI
-
Janscak, P., and T. A. Bickle. 2000. DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI. J. Mol. Biol. 295:1089-1099.
-
(2000)
J. Mol. Biol
, vol.295
, pp. 1089-1099
-
-
Janscak, P.1
Bickle, T.A.2
-
43
-
-
0032190284
-
Analysis of the subunit assembly of the type IC restriction-modification enzyme EcoR124I
-
Janscák, P., D. Dryden, and K. Firman. 1998. Analysis of the subunit assembly of the type IC restriction-modification enzyme EcoR124I. Nucleic Acids Res. 26:4439-4445.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4439-4445
-
-
Janscák, P.1
Dryden, D.2
Firman, K.3
-
44
-
-
44949083992
-
-
Reference deleted
-
Reference deleted.
-
-
-
-
45
-
-
0033522512
-
DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes
-
Janscak, P., M. P. MacWilliams, U. Sandmeier, V. Nagaraja, and T. A. Bickle. 1999. DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes. EMBO J. 18:2638-2647.
-
(1999)
EMBO J
, vol.18
, pp. 2638-2647
-
-
Janscak, P.1
MacWilliams, M.P.2
Sandmeier, U.3
Nagaraja, V.4
Bickle, T.A.5
-
46
-
-
0035936699
-
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I
-
Janscak, P., U. Sandmeier, M. D. Szczelkun, and T. A. Bickle. 2001. Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I. J. Mol. Biol. 306:417-431.
-
(2001)
J. Mol. Biol
, vol.306
, pp. 417-431
-
-
Janscak, P.1
Sandmeier, U.2
Szczelkun, M.D.3
Bickle, T.A.4
-
47
-
-
0026613987
-
Purification and properties of the Eco571 restriction endonuclease and methylase - prototypes of a new class (type IV)
-
Janulaitis, A., M. Petrusyte, Z. Maneliene, S. Klimasauskas, and V. Butkus. 1992. Purification and properties of the Eco571 restriction endonuclease and methylase - prototypes of a new class (type IV). Nucleic Acids Res. 20:6043-6049.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 6043-6049
-
-
Janulaitis, A.1
Petrusyte, M.2
Maneliene, Z.3
Klimasauskas, S.4
Butkus, V.5
-
48
-
-
15944421803
-
On the DNA cleavage mechanism of type I restriction enzymes
-
Jindrova, E., S. Schmid-Nuoffer, F. Hamburger, P. Janscak, and T. A. Bickle. 2005. On the DNA cleavage mechanism of type I restriction enzymes. Nucleic Acids Res. 33:1760-1766.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1760-1766
-
-
Jindrova, E.1
Schmid-Nuoffer, S.2
Hamburger, F.3
Janscak, P.4
Bickle, T.A.5
-
49
-
-
0014966111
-
A restriction enzyme from Haemophilus influenzae. II. Base sequence of the recognition site
-
Kelly, T. J., and H. O. Smith. 1970. A restriction enzyme from Haemophilus influenzae. II. Base sequence of the recognition site. J. Mol. Biol. 51:393-409.
-
(1970)
J. Mol. Biol
, vol.51
, pp. 393-409
-
-
Kelly, T.J.1
Smith, H.O.2
-
50
-
-
14744267674
-
Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications
-
Kim, J.-S., A. DeGiovanni, J. Jancarik, P. D. Adams, H. Yokota, R. Kim, and S.-H. Kim. 2005. Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proc. Natl. Acad. Sci. USA 102:3248-3253.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 3248-3253
-
-
Kim, J.-S.1
DeGiovanni, A.2
Jancarik, J.3
Adams, P.D.4
Yokota, H.5
Kim, R.6
Kim, S.-H.7
-
51
-
-
0028099459
-
A symmetrical model for the domain structure of type I DNA methyltransferases
-
Kneale, G. G. 1994. A symmetrical model for the domain structure of type I DNA methyltransferases. J. Mol. Biol.243:1-5.
-
(1994)
J. Mol. Biol
, vol.243
, pp. 1-5
-
-
Kneale, G.G.1
-
52
-
-
0019902601
-
Influence of phage T3 and T7 gene functions on type III (EcoP1) DNA restriction-modification system in vivo
-
Krüger, D. H., M. Reuter, S. Hansen, and C. Schroeder. 1982. Influence of phage T3 and T7 gene functions on type III (EcoP1) DNA restriction-modification system in vivo. Mol. Gen. Genet. 185:457-461.
-
(1982)
Mol. Gen. Genet
, vol.185
, pp. 457-461
-
-
Krüger, D.H.1
Reuter, M.2
Hansen, S.3
Schroeder, C.4
-
53
-
-
0026611235
-
Characterisation of the mrcBC region of Escherichia coli K-12 wild-type and mutant strains
-
Krüger, T., C. Grund, C. Wild, and M. Noyer-Weidner. 1992. Characterisation of the mrcBC region of Escherichia coli K-12 wild-type and mutant strains. Gene 114:1-12.
-
(1992)
Gene
, vol.114
, pp. 1-12
-
-
Krüger, T.1
Grund, C.2
Wild, C.3
Noyer-Weidner, M.4
-
54
-
-
0029790428
-
Generation of new DNA binding specificity by truncation of the type IC EcoDXXI hsdS gene
-
MacWilliams, M. P., and T. A. Bickle. 1996. Generation of new DNA binding specificity by truncation of the type IC EcoDXXI hsdS gene. EMBO J. 15:4775-4783.
-
(1996)
EMBO J
, vol.15
, pp. 4775-4783
-
-
MacWilliams, M.P.1
Bickle, T.A.2
-
55
-
-
0026584744
-
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage
-
Meisel, A., T. A. Bickle, D. H. Krüger, and C. Schroeder. 1992. Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage. Nature 355:467-469.
-
(1992)
Nature
, vol.355
, pp. 467-469
-
-
Meisel, A.1
Bickle, T.A.2
Krüger, D.H.3
Schroeder, C.4
-
56
-
-
0027501321
-
Macroevolution by transposition: Drastic modification of DNA recognition by a type 1 restriction enzyme following Tn5 transposition
-
Meister, J., M. MacWilliams, P. Hübner, H. Jütte, E. Skrzypek, A. Piekarowicz, and T. A. Bickle. 1993. Macroevolution by transposition: drastic modification of DNA recognition by a type 1 restriction enzyme following Tn5 transposition. EMBO J. 12:4585-4591.
-
(1993)
EMBO J
, vol.12
, pp. 4585-4591
-
-
Meister, J.1
MacWilliams, M.2
Hübner, P.3
Jütte, H.4
Skrzypek, E.5
Piekarowicz, A.6
Bickle, T.A.7
-
57
-
-
0031969570
-
Protein-protein and protein-DNA interactions in the type I restriction endonuclease R.EcoR124I
-
Mernagh, D. R., P. Janscák, K. Firman, and G. G. Kneale. 1998. Protein-protein and protein-DNA interactions in the type I restriction endonuclease R.EcoR124I. Biol. Chem. 379:497-503.
-
(1998)
Biol. Chem
, vol.379
, pp. 497-503
-
-
Mernagh, D.R.1
Janscák, P.2
Firman, K.3
Kneale, G.G.4
-
58
-
-
0030457882
-
High resolution footprinting of a type I methyltransferase reveals a large structural distortion within the DNA recognition site
-
Mernagh, D. R., and G. G. Kneale. 1996. High resolution footprinting of a type I methyltransferase reveals a large structural distortion within the DNA recognition site. Nucleic Acids Res. 24:4853-4858.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4853-4858
-
-
Mernagh, D.R.1
Kneale, G.G.2
-
59
-
-
0014427164
-
DNA restriction enzyme from Escherichia coli
-
Meselson, M., and R. Yuan. 1968. DNA restriction enzyme from Escherichia coli. Nature 217:1110-1114.
-
(1968)
Nature
, vol.217
, pp. 1110-1114
-
-
Meselson, M.1
Yuan, R.2
-
60
-
-
0013877444
-
The relation of resistance transfer factors to the F-factor (sex-factor) of Escherichia coli K12
-
Meynell, E., and N. Datta. 1966. The relation of resistance transfer factors to the F-factor (sex-factor) of Escherichia coli K12. Genet. Res. (Cambridge) 7:134-140.
-
(1966)
Genet. Res. (Cambridge)
, vol.7
, pp. 134-140
-
-
Meynell, E.1
Datta, N.2
-
61
-
-
0034130457
-
Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle)
-
Murray, N. E. 2000. Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol. Mol. Biol. Rev. 64:412-434.
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 412-434
-
-
Murray, N.E.1
-
62
-
-
33645821020
-
Structural model for the multisubunit type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA
-
Obarska, A., A. Blundell, M. Feder, Š. Vejsadová, E. Šišáková, M. Weiserová, J. M. Bujnicki, and K. Firman. 2006. Structural model for the multisubunit type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA. Nucleic Acids Res. 34:1992-2005.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1992-2005
-
-
Obarska, A.1
Blundell, A.2
Feder, M.3
Vejsadová, S.4
Šišáková, E.5
Weiserová, M.6
Bujnicki, J.M.7
Firman, K.8
-
63
-
-
0026562887
-
High-level expression of the cloned genes encoding the subunits of and the intact DNA methyltransferase, M.EcoR124
-
Patel, J., I. Taylor, C. F. Dutta, G. G. Kneale, and K. Firman. 1992. High-level expression of the cloned genes encoding the subunits of and the intact DNA methyltransferase, M.EcoR124. Gene 112:21-27.
-
(1992)
Gene
, vol.112
, pp. 21-27
-
-
Patel, J.1
Taylor, I.2
Dutta, C.F.3
Kneale, G.G.4
Firman, K.5
-
64
-
-
13644256398
-
Protein-polymer nano-machines. Towards synthetic control of biological processes
-
Pennadam, S. S., K. Firman, C. Alexander, and D. C. Górecki. 2004. Protein-polymer nano-machines. Towards synthetic control of biological processes. J. Nanobiotechnol. 2:1-7.
-
(2004)
J. Nanobiotechnol
, vol.2
, pp. 1-7
-
-
Pennadam, S.S.1
Firman, K.2
Alexander, C.3
Górecki, D.C.4
-
65
-
-
0013769740
-
Effect of phage-controlled restriction on genetic linkage in bacterial crosses
-
Pittard, J. 1964. Effect of phage-controlled restriction on genetic linkage in bacterial crosses. J. Bacteriol. 87:1256-1257.
-
(1964)
J. Bacteriol
, vol.87
, pp. 1256-1257
-
-
Pittard, J.1
-
66
-
-
0032515196
-
Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme
-
Powell, L. M., D. T. F. Dryden, and N. E. Murray. 1998. Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme. J. Mol. Biol. 283:963-976.
-
(1998)
J. Mol. Biol
, vol.283
, pp. 963-976
-
-
Powell, L.M.1
Dryden, D.T.F.2
Murray, N.E.3
-
67
-
-
44949111812
-
-
PhD thesis. University of Newcastle upon Tyne, Newcastle upon Tyne, United Kingdom
-
Price, C. 1984. PhD thesis. University of Newcastle upon Tyne, Newcastle upon Tyne, United Kingdom.
-
(1984)
-
-
Price, C.1
-
68
-
-
0024589028
-
Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymes
-
Price, C., J. Lingner, T. A. Bickle, K. Firman, and S. W. Glover. 1989. Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymes. J. Mol. Biol. 205:115-125.
-
(1989)
J. Mol. Biol
, vol.205
, pp. 115-125
-
-
Price, C.1
Lingner, J.2
Bickle, T.A.3
Firman, K.4
Glover, S.W.5
-
69
-
-
0023658445
-
EcoR124 and EcoR124/3: The first members of a new family of type I restriction and modification systems
-
Price, C., T. Pripfi, and T. A. Bickle. 1987. EcoR124 and EcoR124/3: the first members of a new family of type I restriction and modification systems. Eur. J. Biochem.167:111-115.
-
(1987)
Eur. J. Biochem
, vol.167
, pp. 111-115
-
-
Price, C.1
Pripfi, T.2
Bickle, T.A.3
-
70
-
-
0023332997
-
DNA recognition by a new family of type I restriction enzymes: A unique relationship between two different DNA specificities
-
Price, C., J. C. W. Shepherd, and T. A. Bickle. 1987. DNA recognition by a new family of type I restriction enzymes: a unique relationship between two different DNA specificities. EMBO J. 6:1493-1498.
-
(1987)
EMBO J
, vol.6
, pp. 1493-1498
-
-
Price, C.1
Shepherd, J.C.W.2
Bickle, T.A.3
-
71
-
-
17844400537
-
Perspective: How restriction enzymes became the work-horses of molecular biology
-
Roberts, R. J. 2005. Perspective: how restriction enzymes became the work-horses of molecular biology. Proc. Natl. Acad. Sci. USA 102:5905-5908.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5905-5908
-
-
Roberts, R.J.1
-
72
-
-
0037389511
-
-
Roberts, R. J., M. Belfort, T. Bestor, A. S. Bhagwat, T. A. Bickle, J. Bitinaite, R. M. Blumenthal, S. K. Degtyarev, D. T. F. Dryden, K. Dybvig, K. Firman, E. S. Gromova, R. I. Gumport, S. E. Halford, S. Hattman, J. Heitman, D. P. Hornby, A. Janulaitis, A. Jeltsch, J. Josephsen, A. Kiss, T. R. Klaenhammer, I. Kobayashi, H. Kong, D. H. Kruger, S. Lacks, M. G. Marinus, M. Miyahara, R. D. Morgan, N. E. Murray, V. Nagaraja, A. Piekarowicz, A. Pingoud, E. Raleigh, D. N. Rao, N. Reich, V. E. Repin, E. U. Selker, P.-C. Shaw, D. C. Stein, B. L. Stoddard, W. Szybalski, T. A. Trautner, J. L. Van Etten, J. M. B. Vitor, G. G. Wilson, and S.-Y. Xu. 2003. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res. 31:1805-1812.
-
Roberts, R. J., M. Belfort, T. Bestor, A. S. Bhagwat, T. A. Bickle, J. Bitinaite, R. M. Blumenthal, S. K. Degtyarev, D. T. F. Dryden, K. Dybvig, K. Firman, E. S. Gromova, R. I. Gumport, S. E. Halford, S. Hattman, J. Heitman, D. P. Hornby, A. Janulaitis, A. Jeltsch, J. Josephsen, A. Kiss, T. R. Klaenhammer, I. Kobayashi, H. Kong, D. H. Kruger, S. Lacks, M. G. Marinus, M. Miyahara, R. D. Morgan, N. E. Murray, V. Nagaraja, A. Piekarowicz, A. Pingoud, E. Raleigh, D. N. Rao, N. Reich, V. E. Repin, E. U. Selker, P.-C. Shaw, D. C. Stein, B. L. Stoddard, W. Szybalski, T. A. Trautner, J. L. Van Etten, J. M. B. Vitor, G. G. Wilson, and S.-Y. Xu. 2003. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res. 31:1805-1812.
-
-
-
-
74
-
-
0014684407
-
The Escherichia coli B restriction endonuclease
-
Roulland-Dussoix, D., and H. W. Boyer. 1969. The Escherichia coli B restriction endonuclease. Biochem. Biophys. Acta 195:219-229.
-
(1969)
Biochem. Biophys. Acta
, vol.195
, pp. 219-229
-
-
Roulland-Dussoix, D.1
Boyer, H.W.2
-
75
-
-
0015759308
-
DNA methylases of Haemophilus influenzae Rd. I. Purification and properties
-
Roy, P. H., and H. O. Smith. 1973. DNA methylases of Haemophilus influenzae Rd. I. Purification and properties. J. Mol. Biol. 81:427-444.
-
(1973)
J. Mol. Biol
, vol.81
, pp. 427-444
-
-
Roy, P.H.1
Smith, H.O.2
-
76
-
-
0018956942
-
Construction and properties of a new cloning vehicle allowing direct screening for recombinant plasmids
-
Ruther, U. 1980. Construction and properties of a new cloning vehicle allowing direct screening for recombinant plasmids. Mol. Gen. Genet. 178:475-477.
-
(1980)
Mol. Gen. Genet
, vol.178
, pp. 475-477
-
-
Ruther, U.1
-
77
-
-
0013898397
-
Effect of various physiological conditions on host-controlled restriction in Escherichia coli K(P1)
-
Schell, J., and S. W. Glover. 1966. Effect of various physiological conditions on host-controlled restriction in Escherichia coli K(P1). Genet. Res. (Cambridge) 7:273-276.
-
(1966)
Genet. Res. (Cambridge)
, vol.7
, pp. 273-276
-
-
Schell, J.1
Glover, S.W.2
-
78
-
-
28644433100
-
Dynamics of initiation, termination and reinitiation of DNA translocation by the motor protein EcoR124I
-
Seidel, R., J. G. P. Bloom, J. van Noort, C. F. Dutta, N. H. Dekker, K. Firman, M. D. Szczelkun, and C. Dekker. 2005. Dynamics of initiation, termination and reinitiation of DNA translocation by the motor protein EcoR124I. EMBO J. 24:4188-4197.
-
(2005)
EMBO J
, vol.24
, pp. 4188-4197
-
-
Seidel, R.1
Bloom, J.G.P.2
van Noort, J.3
Dutta, C.F.4
Dekker, N.H.5
Firman, K.6
Szczelkun, M.D.7
Dekker, C.8
-
79
-
-
33846898070
-
Single-molecule studies of nucleic acid motors
-
Seidel, R., and C. Dekker. 2007. Single-molecule studies of nucleic acid motors. Curr. Opin. Struct. Biol. 17:80-86.
-
(2007)
Curr. Opin. Struct. Biol
, vol.17
, pp. 80-86
-
-
Seidel, R.1
Dekker, C.2
-
80
-
-
4344649856
-
Real-time observation of DNA translocation by the type I restriction-modification enzyme EcoR124I
-
Seidel, R., J. van Noort, C. van der Scheer, J. G. P. Bloom, N. H. Dekker, C. F. Dutta, A. Blundell, T. Robinson, K. Firman, and C. Dekker. 2004. Real-time observation of DNA translocation by the type I restriction-modification enzyme EcoR124I. Nat. Struct. Mol. Biol. 11:838-843.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 838-843
-
-
Seidel, R.1
van Noort, J.2
van der Scheer, C.3
Bloom, J.G.P.4
Dekker, N.H.5
Dutta, C.F.6
Blundell, A.7
Robinson, T.8
Firman, K.9
Dekker, C.10
-
81
-
-
34247859353
-
Controlling the motor activity of a transcription-repair coupling factor: Autoinhibition and the role of RNA polymerase
-
Smith, A. J., M. D. Szczelkun, and N. J. Savery. 2007. Controlling the motor activity of a transcription-repair coupling factor: autoinhibition and the role of RNA polymerase. Nucleic Acids Res. 35:1802-1811.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1802-1811
-
-
Smith, A.J.1
Szczelkun, M.D.2
Savery, N.J.3
-
82
-
-
0017250024
-
Characterization of plasmids coding for the restriction endonuclease EcoRI
-
Smith, H. W., G. O. Humphreys, G. Willshaw, and E. S. Anderson. 1975. Characterization of plasmids coding for the restriction endonuclease EcoRI. Mol. Gen. Genet. 143:319-325.
-
(1975)
Mol. Gen. Genet
, vol.143
, pp. 319-325
-
-
Smith, H.W.1
Humphreys, G.O.2
Willshaw, G.3
Anderson, E.S.4
-
83
-
-
33646807817
-
When a helicase is not a helicase: DsDNA tracking by the motor protein EcoR124I
-
Stanley, L. K., R. Seidel, C. van der Scheer, N. H. Dekker, M. D. Szczelkun, and C. Dekker. 2006. When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I. EMBO J. 25:2230-2239.
-
(2006)
EMBO J
, vol.25
, pp. 2230-2239
-
-
Stanley, L.K.1
Seidel, R.2
van der Scheer, C.3
Dekker, N.H.4
Szczelkun, M.D.5
Dekker, C.6
-
84
-
-
33749983459
-
Direct and random routing of a molecular motor protein at a DNA junction
-
Stanley, L. K., and M. D. Szczelkun. 2006. Direct and random routing of a molecular motor protein at a DNA junction. Nucleic Acids Res. 34:4387-4394.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4387-4394
-
-
Stanley, L.K.1
Szczelkun, M.D.2
-
85
-
-
0023732866
-
Model for how type I restriction enzymes select cleavage sites in DNA
-
Studier, F. W., and P. K. Bandyopadhyay. 1988. Model for how type I restriction enzymes select cleavage sites in DNA. Proc. Natl. Acad. Sci. USA 85:4677-4681.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 4677-4681
-
-
Studier, F.W.1
Bandyopadhyay, P.K.2
-
86
-
-
0029910629
-
Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates
-
Szczelkun, M. D., M. S. Dillingham, P. Janscák, K. Firman, and S. E. Halford. 1996. Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates. EMBO J. 15:6335-6347.
-
(1996)
EMBO J
, vol.15
, pp. 6335-6347
-
-
Szczelkun, M.D.1
Dillingham, M.S.2
Janscák, P.3
Firman, K.4
Halford, S.E.5
-
87
-
-
0028029820
-
DNA binding induces a major structural transition in a type I methyltransferase
-
Taylor, I. A., K. G. Davis, D. Watts, and G. G. Kneale. 1994. DNA binding induces a major structural transition in a type I methyltransferase. EMBO J. 13:5772-5778.
-
(1994)
EMBO J
, vol.13
, pp. 5772-5778
-
-
Taylor, I.A.1
Davis, K.G.2
Watts, D.3
Kneale, G.G.4
-
88
-
-
0031957256
-
A theory of thermal fluctuations in DNA miniplasmids
-
Tobias, I. 1998. A theory of thermal fluctuations in DNA miniplasmids. Biophys. J. 74:2545-2553.
-
(1998)
Biophys. J
, vol.74
, pp. 2545-2553
-
-
Tobias, I.1
-
89
-
-
13344273338
-
On the mechanism of host-induced modification. Multiplicity activation and thermolabile factor responsible for phage growth restriction
-
Uetake, H., S. Tozama, and S. Hagiwara. 1964. On the mechanism of host-induced modification. Multiplicity activation and thermolabile factor responsible for phage growth restriction. Virology 22:202-213.
-
(1964)
Virology
, vol.22
, pp. 202-213
-
-
Uetake, H.1
Tozama, S.2
Hagiwara, S.3
-
90
-
-
13544277165
-
Initiation of translocation by type I restriction-modification enzymes is associated with a short DNA extrusion
-
van Noort, J., T. van der Heijden, C. F. Dutta, K. Firman, and C. Dekker. 2004. Initiation of translocation by type I restriction-modification enzymes is associated with a short DNA extrusion. Nucleic Acids Res. 32:6540-6547.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6540-6547
-
-
van Noort, J.1
van der Heijden, T.2
Dutta, C.F.3
Firman, K.4
Dekker, C.5
-
91
-
-
0014023533
-
Infectious drug resistance in enteric bacteria
-
Watanabe, T. 1966. Infectious drug resistance in enteric bacteria. N. Engl. J. Med. 275:888.
-
(1966)
N. Engl. J. Med
, vol.275
, pp. 888
-
-
Watanabe, T.1
-
92
-
-
0034386995
-
A novel mutant of the type I restriction-modification enzyme EcoR124I is altered at a key stage in the subunit assembly pathway
-
Weiserová, M., C. F. Dutta, and K. Firman. 2000. A novel mutant of the type I restriction-modification enzyme EcoR124I is altered at a key stage in the subunit assembly pathway. J. Mol. Biol.304:301-310.
-
(2000)
J. Mol. Biol
, vol.304
, pp. 301-310
-
-
Weiserová, M.1
Dutta, C.F.2
Firman, K.3
-
93
-
-
0031959009
-
Isolation of a non-classical mutant of the DNA recognition subunit of the type I restriction endonuclease R.EcoR124I
-
Weiserová, M., and K. Firman. 1998. Isolation of a non-classical mutant of the DNA recognition subunit of the type I restriction endonuclease R.EcoR124I. Biol. Chem. 379:585-589.
-
(1998)
Biol. Chem
, vol.379
, pp. 585-589
-
-
Weiserová, M.1
Firman, K.2
-
94
-
-
0026338873
-
Restriction and modification systems
-
Wilson, G. G., and N. E. Murray. 1991. Restriction and modification systems. Annu. Rev. Genet. 25:585-627.
-
(1991)
Annu. Rev. Genet
, vol.25
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
95
-
-
0015456242
-
R-factor-controlled restriction and modification of deoxyribonucleic acid: Restriction mutants
-
Yoshimori, R., D. Roulland-Dussoix, and H. W. Boyer. 1972. R-factor-controlled restriction and modification of deoxyribonucleic acid: restriction mutants. J. Bacteriol. 112:1275-1279.
-
(1972)
J. Bacteriol
, vol.112
, pp. 1275-1279
-
-
Yoshimori, R.1
Roulland-Dussoix, D.2
Boyer, H.W.3
-
97
-
-
0016734523
-
Multiple steps in DNA recognition by restriction endonuclease from E. coli K
-
Yuan, R., T. A. Bickle, W. Ebbers, and C. Brack. 1975. Multiple steps in DNA recognition by restriction endonuclease from E. coli K. Nature 256:556-560.
-
(1975)
Nature
, vol.256
, pp. 556-560
-
-
Yuan, R.1
Bickle, T.A.2
Ebbers, W.3
Brack, C.4
-
98
-
-
0030762387
-
The HsdR subunit of R.EcoR124II: Cloning and over-expression of the gene and unexpected properties of the subunit
-
Zinkevich, V., L. Popova, V. Kryukov, A. Abadjieva, I. Bogdarina, P. Janscák, and K. Firman. 1997. The HsdR subunit of R.EcoR124II: cloning and over-expression of the gene and unexpected properties of the subunit. Nucleic Acids Res. 25:503-510.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 503-510
-
-
Zinkevich, V.1
Popova, L.2
Kryukov, V.3
Abadjieva, A.4
Bogdarina, I.5
Janscák, P.6
Firman, K.7
-
99
-
-
0041886795
-
Magnetic tweezers: A sensitive tool to study DNA and chromatin at the single-molecule level
-
Zlatanova, J., and S. H. Leuba. 2003. Magnetic tweezers: a sensitive tool to study DNA and chromatin at the single-molecule level. Biochem. Cell Biol. 81:151-159.
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(2003)
Biochem. Cell Biol
, vol.81
, pp. 151-159
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Zlatanova, J.1
Leuba, S.H.2
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