Cellular localization of Type I restriction-modification enzymes is family dependent

Biochemical and Biophysical Research Communications

Volumn 319, Issue 2, 2004, Pages 375-380

  Holubova I ^a   Vejsadova S ^a   Firman, K ^b   Weiserova M ^a  

^a INSTITUTE OF MICROBIOLOGY   (Czech Republic)

^b UNIVERSITY OF PORTSMOUTH   (United Kingdom)

Author keywords

Membrane associated proteins; Protein localization; Proteolysis; Restriction modification; Spheroplast; Subcellular fraction

Indexed keywords

MEMBRANE ENZYME; TRYPSIN; TYPE I SITE SPECIFIC DEOXYRIBONUCLEASE;

ARTICLE; BACTERIAL STRAIN; CELL MEMBRANE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME ISOLATION; ENZYME LOCALIZATION; ENZYME SUBUNIT; ESCHERICHIA COLI; GENE INTERACTION; IMMUNOBLOTTING; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; SPHEROPLAST;

DEOXYRIBONUCLEASES, TYPE I SITE-SPECIFIC; DNA RESTRICTION ENZYMES; ESCHERICHIA COLI; SUBCELLULAR FRACTIONS;

ESCHERICHIA COLI;

EID: 2642579051     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.04.184     Document Type: Article

References (42)

1. Roberts R.J., Belfort M., Bestor T., Bhagwat A.S., Bickle T.A., Bitinaite J., Blumenthal R.M., Degtyarev S., Dryden D.T., Dybvig K., Firman K., Gromova E.S., Gumport R.I., Halford S.E., Hattman S., Heitman J., Hornby D.P., Janulaitis A., Jeltsch A., Josephsen J., Kiss A., Klaenhammer T.R., Kobayashi I., Kong H., Kruger D.H., Lacks S., Marinus M.G., Miyahara M., Morgan R.D., Murray N.E., Nagaraja V., Piekarowicz A., Pingoud A., Raleigh E., Rao D.N., Reich N., Repin V.E., Selker E.U., Shaw P.C., Stein D.C., Stoddard B.L., Szybalski W., Trautner T.A., Van Etten J.L., Vitor J.M., Wilson G.G., Xu S.Y. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res. 31:2003;1805-1812
2. Murray N.E. Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol. Mol. Biol. Rev. 64:2000;412-434
3. Dryden D.T., Murray N.E., Rao D.N. Nucleoside triphosphate-dependent restriction enzymes. Nucleic Acids Res. 29:2001;3728-3741
4. Sharp P.M., Kelleher J.E., Daniel A.S., Cowan G.M., Murray N.E. Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria. Proc. Natl. Acad. Sci. USA. 89:1992;9836-9840
5. Murray N.E. Immigration control of DNA in bacteria: self versus non-self. Microbiology. 148:2002;3-20
6. Wilson G.G., Murray N.E. Restriction and modification systems. Annu. Rev. Genet. 25:1991;585-627
7. Barcus V.A., Titheradge A.J., Murray N.E. The diversity of alleles at the hsd locus in natural populations of Escherichia coli. Genetics. 140:1995;1187-1197
8. Raleigh E.A. Organization and function of the mcrBC genes of Escherichia coli K-12. Mol. Microbiol. 6:1992;1079-1086
9. Glover S.W., Firman K., Watson G., Price C., Donaldson S. The alternate expression of two restriction and modification systems. Mol. Gen. Genet. 190:1983;65-69
10. Tyndall C., Meister J., Bickle T.A. The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene. J. Mol. Biol. 237:1994;266-274
11. Glover S.W., Colson C. Genetics of host-controlled restriction and modification in Escherichia coli. Genet. Res. 13:1969;227-240
12. Dryden D.T., Cooper L.P., Thorpe P.H., Byron O. The in vitro assembly of the EcoKI type I DNA restriction/modification enzyme and its in vivo implications. Biochemistry. 36:1997;1065-1076
13. Janscak P., Dryden D.T., Firman K. Analysis of the subunit assembly of the type IC restriction-modification enzyme EcoR124I. Nucleic Acids Res. 26:1998;4439-4445
14. Janscak P., Bickle T.A. The DNA recognition subunit of the type IB restriction-modification enzyme EcoAI tolerates circular permutations of its polypeptide chain. J. Mol. Biol. 284:1998;937-948
15. Loenen W.A., Daniel A.S., Braymer H.D., Murray N.E. Organization and sequence of the hsd genes of Escherichia coli K-12. J. Mol. Biol. 198:1987;159-170
16. Prakash-Cheng A., Chung S.S., Ryu J. The expression and regulation of hsdK genes after conjugative transfer. Mol. Gen. Genet. 241:1993;491-496
17. Firman K., Dutta Ch., Weiserová M., Janscák P. The role of subunit assembly in the functional control of type I restriction-modification enzymes. Mol. Biol. Today. 1:2000;34-41
18. Jensen R.B., Shapiro L. Proteins on the move: dynamic protein localization in prokaryotes. Trends Cell Biol. 10:2000;483-488
19. Schell J., Glover S.W. On the localization of a factor responsible for host-controlled restriction in Escherichia coli K(P1). Genet. Res. 7:1966;277-279
20. Holubova I., Vejsadova S., Weiserova M., Firman K. Localization of the Type I restriction-modification enzyme EcoKI in the bacterial cell. Biochem. Biophys. Res. Commun. 270:2000;46-51
21. Doronina V.A., Murray N.E. The proteolytic control of restriction activity in Escherichia coli K-12. Mol. Microbiol. 39:2001;416-428
22. Sambrook J.C., Fritsch E.F., Maniatas T. Molecular Cloning: A Laboratory Manual. second ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
23. Taylor I., Patel J., Firman K., Kneale G. Purification and biochemical characterisation of the EcoR124 type I modification methylase. Nucleic Acids Res. 20:1992;179-186
24. Janscak P., Sandmeier U., Bickle T.A. Single amino acid substitutions in the HsdR subunit of the type IB restriction enzyme EcoAI uncouple the DNA translocation and DNA cleavage activities of the enzyme. Nucleic Acids Res. 27:1999;2638-2643
25. Minsky A., Summers R.G., Knowles J.R. Secretion of beta-lactamase into the periplasm of Escherichia coli: evidence for a distinct release step associated with a conformational change. Proc. Natl. Acad. Sci. USA. 83:1986;4180-4184
26. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:1970;680-685
27. Nestle M., Roberts W.K. An extracellular nuclease from Serratia marcescens. II. Specificity of the enzyme. J. Biol. Chem. 244:1969;5219-5225
28. Baichwal V., Liu D., Ames G.F. The ATP-binding component of a prokaryotic traffic ATPase is exposed to the periplasmic (external) surface. Proc. Natl. Acad. Sci. USA. 90:1993;620-624
29. Hubacek J., Weiserova M., Janscak P., Firman K. Restriction endonucleases R.EcoKI and R.EcoR124I are probably located in different environments within the bacterial cell. Folia Microbiol. 39:1994;162-165
30. Tapiero H., Zwingelstein G., Fourcade A., Portoukalian J. The effect of dimethyl sulfoxide on the membrane dynamics and the phospholipid composition of two different cell lines. Ann. N. Y. Acad. Sci. 411:1983;383-388
31. Makovets S., Titheradge A.J., Murray N.E. ClpX and ClpP are essential for the efficient acquisition of genes specifying type IA and IB restriction systems. Mol. Microbiol. 28:1998;25-35
32. Kulik E., Bickle T. Regulation of the activity of the type IC EcoR124I restriction enzyme. J. Mol. Biol. 264:1996;891-906
33. Patel J., Taylor I., Dutta C.F., Kneale G., Firman K. High-level expression of the cloned genes encoding the subunits of and intact DNA methyltransferase, M.EcoR124. Gene. 112:1992;21-27
34. Leibowitz P.J., Schaechter M. The attachment of the bacterial chromosome to the cell membrane. Int. Rev. Cytol. 41:1975;1-28
35. Pansegrau W., Lanka E. Mechanisms of initiation and termination reactions in conjugative DNA processing. Independence of tight substrate binding and catalytic activity of relaxase (TraI) of IncPalpha plasmid RP4. J. Biol. Chem. 271:1996;13068-13076
36. Mosig G., Macdonald P. A new membrane-associated DNA replication protein, the gene 69 product of bacteriophage T4, shares a patch of homology with the Escherichia coli dnaA protein. J. Mol. Biol. 189:1986;243-248
37. Makovets S., Powell L.M., Titheradge A.J., Blakely G.W., Murray N.E. Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease? Mol. Microbiol. 51:2004;135-147
38. Studier F.W., Rosenberg A.H., Dunn J.J., Dubendorff J.W. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185:1990;60-89
39. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 33:1985;103-119
40. Firman K., Price C., Glover S.W. The EcoR124 and EcoR124/3 restriction and modification systems: cloning the genes. Plasmid. 14:1985;224-234
41. Zinkevich V., Popova L., Kryukov V., Abadjieva A., Bogdarina I., Janscak P., Firman K. The HsdR subunit of R.EcoR124II: cloning and over-expression of the gene and unexpected properties of the subunit. Nucleic Acids Res. 25:1997;503-511
42. Fuller-Pace F.V., Cowan G.M., Murray N.E. EcoA and EcoE: alternatives to the EcoK family of type I restriction and modification systems of Escherichia coli. J. Mol. Biol. 186:1985;65-75