메뉴 건너뛰기




Volumn 56, Issue 1, 2008, Pages 178-190

Intensive management affects composition of betaproteobacterial ammonia oxidizers in turfgrass systems

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; AMMONIA MONOOXYGENASE; OXIDOREDUCTASE; RNA 16S;

EID: 44849098683     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-007-9335-x     Document Type: Article
Times cited : (12)

References (48)
  • 1
    • 0035910145 scopus 로고    scopus 로고
    • Comparative phylogeny of the ammonia monooxygenase subunit a and 16S rRNA genes of ammonia-oxidizing bacteria
    • Aakra A, Utåker JB, Nes IF (2001) Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria. FEMS Microbiol Lett 205:237-242
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 237-242
    • Aakra, A.1    Utåker, J.B.2    Nes, I.F.3
  • 2
    • 0042197522 scopus 로고    scopus 로고
    • Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
    • Avrahami S, Liesack W, Conrad R (2003) Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ Microbiol 5:691-705
    • (2003) Environ Microbiol , vol.5 , pp. 691-705
    • Avrahami, S.1    Liesack, W.2    Conrad, R.3
  • 3
    • 0141786957 scopus 로고    scopus 로고
    • Liming induces growth of a diverse flora of ammonia-oxidising bacteria in acid spruce forest soil as determined by SSCP and DGGE
    • Bäckman JS, Hermansson A, Tebbe CC, Lindgren P-E (2003) Liming induces growth of a diverse flora of ammonia-oxidising bacteria in acid spruce forest soil as determined by SSCP and DGGE. Soil Biol Biochem 35:1337-1347
    • (2003) Soil Biol Biochem , vol.35 , pp. 1337-1347
    • Bäckman, J.S.1    Hermansson, A.2    Tebbe, C.C.3    Lindgren, P.-E.4
  • 4
    • 0036794991 scopus 로고    scopus 로고
    • Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria
    • Bollmann A, Bär-Gilissen MJ, Laanbroek HJ (2002) Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria. Appl Environ Microbiol 68:4751-4757
    • (2002) Appl Environ Microbiol , vol.68 , pp. 4751-4757
    • Bollmann, A.1    Bär-Gilissen, M.J.2    Laanbroek, H.J.3
  • 5
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns MA, Stephen JR, Kowalchuk GA, Prosser JI, Paul EA (1999) Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl Environ Microbiol 65:2994-3000
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Prosser, J.I.4    Paul, E.A.5
  • 6
    • 3843094830 scopus 로고    scopus 로고
    • Diversity and composition of tropical soil nitrifiers across a plant diversity gradient and among land-use types
    • Carney KM, Matson PA, Bohannan BM (2004) Diversity and composition of tropical soil nitrifiers across a plant diversity gradient and among land-use types. Ecol Lett 7:684-694
    • (2004) Ecol Lett , vol.7 , pp. 684-694
    • Carney, K.M.1    Matson, P.A.2    Bohannan, B.M.3
  • 7
    • 8744237221 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine river: Impact of Paris wastewater effluents
    • Cébron A, Coci M, Garnier J, Laanbroek HJ (2004) Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine river: impact of Paris wastewater effluents. Appl Environ Microbiol 70:6726-6737
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6726-6737
    • Cébron, A.1    Coci, M.2    Garnier, J.3    Laanbroek, H.J.4
  • 8
    • 0035705142 scopus 로고    scopus 로고
    • Impact of herbicides on the abundance and structure of indigenous β-subgroup ammonia-oxidizer communities in soil microcosms
    • Chang Y-J, Hussain A, Stephen JR, Mullen MD, White DC, Peacock A (2001) Impact of herbicides on the abundance and structure of indigenous β-subgroup ammonia-oxidizer communities in soil microcosms. Environ Toxicol Chem 20:2462-2468
    • (2001) Environ Toxicol Chem , vol.20 , pp. 2462-2468
    • Chang, Y.-J.1    Hussain, A.2    Stephen, J.R.3    Mullen, M.D.4    White, D.C.5    Peacock, A.6
  • 9
    • 27944442405 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis gel expansion (DGGEGE)-an attempt to resolve the limitations of co-migration in the DGGE of complex polymicrobial communities
    • Gafan GP, Spratt DA (2005) Denaturing gradient gel electrophoresis gel expansion (DGGEGE)-an attempt to resolve the limitations of co-migration in the DGGE of complex polymicrobial communities. FEMS Microbiol Lett 253:303-307
    • (2005) FEMS Microbiol Lett , vol.253 , pp. 303-307
    • Gafan, G.P.1    Spratt, D.A.2
  • 10
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 11
    • 24344487936 scopus 로고    scopus 로고
    • Plant invasion alters nitrogen cycling by modifying the soil nitrifying community
    • Hawkes CV, Wren IF, Herman DJ, Firestone MK (2005) Plant invasion alters nitrogen cycling by modifying the soil nitrifying community. Ecol Lett 8:976-985
    • (2005) Ecol Lett , vol.8 , pp. 976-985
    • Hawkes, C.V.1    Wren, I.F.2    Herman, D.J.3    Firestone, M.K.4
  • 12
    • 0027184336 scopus 로고
    • The phylogeny of autotrophic ammonia-oxidizing bacteria determined by analysis of 16S ribosomal RNA gene sequences
    • Head IM, Hiorns WD, Embley TM, McCarthy AJ, Saunders JR (1993) The phylogeny of autotrophic ammonia-oxidizing bacteria determined by analysis of 16S ribosomal RNA gene sequences. J Gen Microbiol 139:1147-1153
    • (1993) J Gen Microbiol , vol.139 , pp. 1147-1153
    • Head, I.M.1    Hiorns, W.D.2    Embley, T.M.3    McCarthy, A.J.4    Saunders, J.R.5
  • 13
    • 0033014445 scopus 로고    scopus 로고
    • Nitrous oxide production and methane oxidation by different ammonia-oxidizing bacteria
    • Jiang QQ, Bakken LR (1999) Nitrous oxide production and methane oxidation by different ammonia-oxidizing bacteria. Appl Environ Microbiol 65:2679-2684
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2679-2684
    • Jiang, Q.Q.1    Bakken, L.R.2
  • 14
    • 0009016498 scopus 로고    scopus 로고
    • Assessing the functional implications of soil biodiversity in ecosystems
    • Jones TH, Bradford MA (2001) Assessing the functional implications of soil biodiversity in ecosystems. Ecol Res 16:845-858
    • (2001) Ecol Res , vol.16 , pp. 845-858
    • Jones, T.H.1    Bradford, M.A.2
  • 16
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk GA, Stephen JR, De Boer W, Prosser JL, Embley TM, Woldendorp JW (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63:1489-1497
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    De Boer, W.3    Prosser, J.L.4    Embley, T.M.5    Woldendorp, J.W.6
  • 17
    • 0034548634 scopus 로고    scopus 로고
    • Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands
    • Kowalchuk GA, Steinstra AW, Heilig GH, Stephen JR, Woldendorp JW (2000) Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands. Environ Microbiol 2:99-110
    • (2000) Environ Microbiol , vol.2 , pp. 99-110
    • Kowalchuk, G.A.1    Steinstra, A.W.2    Heilig, G.H.3    Stephen, J.R.4    Woldendorp, J.W.5
  • 18
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: A model for molecular microbial ecology
    • Kowalchuk GA, Stephen JR (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55:485-529
    • (2001) Annu Rev Microbiol , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 19
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 22
    • 0030618810 scopus 로고    scopus 로고
    • Effects of soil osmotic potential on nitrification, ammonification, N-assimilation, and nitrous oxide production
    • Low AP, Stark JM, Dudley LM (1997) Effects of soil osmotic potential on nitrification, ammonification, N-assimilation, and nitrous oxide production. Soil Sci 162:16-27
    • (1997) Soil Sci , vol.162 , pp. 16-27
    • Low, A.P.1    Stark, J.M.2    Dudley, L.M.3
  • 23
    • 0028240270 scopus 로고
    • Molecular analysis of enrichment cultures of marine ammonia oxidizers
    • McCaig AE, Embley TM, Prosser JI (1994) Molecular analysis of enrichment cultures of marine ammonia oxidizers. FEMS Microbiol Lett 120:363-368
    • (1994) FEMS Microbiol Lett , vol.120 , pp. 363-368
    • McCaig, A.E.1    Embley, T.M.2    Prosser, J.I.3
  • 24
    • 0027153142 scopus 로고
    • Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea
    • McTavish H, Fuchs JA, Hooper AB (1993) Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea. J Bacteriol 175:2436-2444
    • (1993) J Bacteriol , vol.175 , pp. 2436-2444
    • McTavish, H.1    Fuchs, J.A.2    Hooper, A.B.3
  • 26
    • 0027460328 scopus 로고
    • Profiling complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 27
    • 0036242855 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
    • Nicolaisen MH, Ramsing NB (2002) Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J Microbiol Methods 50:189-203
    • (2002) J Microbiol Methods , vol.50 , pp. 189-203
    • Nicolaisen, M.H.1    Ramsing, N.B.2
  • 28
    • 0030014717 scopus 로고    scopus 로고
    • The gene encoding ammonia monooxygenase subunit a exists in three nearly identical copies in Nitrosospira sp. NpAV
    • Norton JM, Low JM, Klotz MG (1996) The gene encoding ammonia monooxygenase subunit A exists in three nearly identical copies in Nitrosospira sp. NpAV. FEMS Microbiol Lett 139:181-188
    • (1996) FEMS Microbiol Lett , vol.139 , pp. 181-188
    • Norton, J.M.1    Low, J.M.2    Klotz, M.G.3
  • 29
    • 33846678004 scopus 로고    scopus 로고
    • Low nitrification rates in acid Scots pine forest soils are due to pH-related factors
    • Nugroho RA, Röling WFM, Laverman AM, Verhoef HA (2007) Low nitrification rates in acid Scots pine forest soils are due to pH-related factors. Microb Ecol 53:89-97
    • (2007) Microb Ecol , vol.53 , pp. 89-97
    • Nugroho, R.A.1    Röling, W.F.M.2    Laverman, A.M.3    Verhoef, H.A.4
  • 30
    • 0035432486 scopus 로고    scopus 로고
    • Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil
    • Oved T, Shaviv A, Goldrath T, Mandelbaum RT, Minz D (2001) Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 67:3426-3433
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3426-3433
    • Oved, T.1    Shaviv, A.2    Goldrath, T.3    Mandelbaum, R.T.4    Minz, D.5
  • 32
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
    • Purkhold U, Pommerening-Röser A, Juretschko S, Schmid MC, Koops HP, Wagner M (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66:5368-5382
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5368-5382
    • Purkhold, U.1    Pommerening-Röser, A.2    Juretschko, S.3    Schmid, M.C.4    Koops, H.P.5    Wagner, M.6
  • 33
    • 0141502465 scopus 로고    scopus 로고
    • 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: Extension of the dataset and proposal of a new lineage within the nitrosomonads
    • Purkhold U, Wagner M, Timmermann G, Pommerening-Röser A, Koops HP (2003) 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int J Syst Evol Microbiol 53:1485-1494
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1485-1494
    • Purkhold, U.1    Wagner, M.2    Timmermann, G.3    Pommerening-Röser, A.4    Koops, H.P.5
  • 35
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J (2004) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506
    • (2004) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 36
    • 29744462956 scopus 로고    scopus 로고
    • Soil microbial biomass, activity and nitrogen transformations in a turfgrass chronosequence
    • Shi W, Yao H, Bowman D (2006a) Soil microbial biomass, activity and nitrogen transformations in a turfgrass chronosequence. Soil Biol Biochem 38:311-319
    • (2006) Soil Biol Biochem , vol.38 , pp. 311-319
    • Shi, W.1    Yao, H.2    Bowman, D.3
  • 37
    • 33746613155 scopus 로고    scopus 로고
    • Soil microbial biomass and nitrogen dynamics in a turfgrass chronosequence: A short-term response to turfgrass clipping addition
    • Shi W, Muruganandam S, Bowman D (2006b) Soil microbial biomass and nitrogen dynamics in a turfgrass chronosequence: a short-term response to turfgrass clipping addition. Soil Biol Biochem 38:2032-2042
    • (2006) Soil Biol Biochem , vol.38 , pp. 2032-2042
    • Shi, W.1    Muruganandam, S.2    Bowman, D.3
  • 38
    • 0030250971 scopus 로고    scopus 로고
    • Kinetic characteristics of ammonium-oxidizer communities in a California oak woodland-annual grassland
    • Stark JM, Firestone MK (1996) Kinetic characteristics of ammonium-oxidizer communities in a California oak woodland-annual grassland. Soil Biol Biochem 28:1307-1317
    • (1996) Soil Biol Biochem , vol.28 , pp. 1307-1317
    • Stark, J.M.1    Firestone, M.K.2
  • 39
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rDNA sequences related to b-subgroup ammonia-oxidizing bacteria
    • Stephen JR, McCaig AE, Smith Z, Prosser JI, Embley TM (1996) Molecular diversity of soil and marine 16S rDNA sequences related to b-subgroup ammonia-oxidizing bacteria. Appl Environ Microbiol 62:4147-4154
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 40
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen JR, Kowalchuk GA, Bruns MAV, McCaig AE, Phillips CJ, Embley TM, Prosser JI (1998) Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl Environ Microbiol 64:2958-2965
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2958-2965
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.A.V.3    McCaig, A.E.4    Phillips, C.J.5    Embley, T.M.6    Prosser, J.I.7
  • 41
    • 0036566806 scopus 로고    scopus 로고
    • Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by reconditioning PCR
    • Thompson JR, Marcelino LA, Polz MF (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by reconditioning PCR. Nucleic Acids Res 30:2083-2088
    • (2002) Nucleic Acids Res , vol.30 , pp. 2083-2088
    • Thompson, J.R.1    Marcelino, L.A.2    Polz, M.F.3
  • 42
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik V, Ovreas L, Thingstad TF (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296:1064-1066
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Ovreas, L.2    Thingstad, T.F.3
  • 43
    • 0036135250 scopus 로고    scopus 로고
    • Grassland management regimens reduce small-scale heterogeneity and species diversity of proteobacterial ammonia oxidizer populations
    • Webster G, Embley TM, Prosser JI (2002) Grassland management regimens reduce small-scale heterogeneity and species diversity of proteobacterial ammonia oxidizer populations. Appl Environ Microbiol 68:20-30
    • (2002) Appl Environ Microbiol , vol.68 , pp. 20-30
    • Webster, G.1    Embley, T.M.2    Prosser, J.I.3
  • 44
    • 17844403255 scopus 로고    scopus 로고
    • Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils
    • Webster G, Embley TM, Freitag TE, Smith Z, Prosser JI (2005) Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils. Environ Microbiol 7:676-684
    • (2005) Environ Microbiol , vol.7 , pp. 676-684
    • Webster, G.1    Embley, T.M.2    Freitag, T.E.3    Smith, Z.4    Prosser, J.I.5
  • 45
    • 33748564323 scopus 로고    scopus 로고
    • Soil microbial community structure and diversity in a turfgrass chronosequence: Land-use change versus turfgrass management
    • Yao H, Bowman D, Shi W (2006) Soil microbial community structure and diversity in a turfgrass chronosequence: land-use change versus turfgrass management. Appl Soil Ecol 34:209-218
    • (2006) Appl Soil Ecol , vol.34 , pp. 209-218
    • Yao, H.1    Bowman, D.2    Shi, W.3
  • 46
    • 18444404637 scopus 로고    scopus 로고
    • Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire
    • Yeager CM, Northup DE, Grow CC, Barns SM, Kuske CR (2005) Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire. Appl Environ Microbiol 71:2713-2722
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2713-2722
    • Yeager, C.M.1    Northup, D.E.2    Grow, C.C.3    Barns, S.M.4    Kuske, C.R.5
  • 47
    • 9644263929 scopus 로고    scopus 로고
    • Optimized sequence retrieval from single bands of temperature gradient gel electrophoresis profiles of the amplified 16S rDNA fragments from an activated sludge system
    • Zhang X, Yan X, Gao P, Wang L, Zhou Z, Zhao L (2005) Optimized sequence retrieval from single bands of temperature gradient gel electrophoresis profiles of the amplified 16S rDNA fragments from an activated sludge system. J Microbiol Methods 60:1-11
    • (2005) J Microbiol Methods , vol.60 , pp. 1-11
    • Zhang, X.1    Yan, X.2    Gao, P.3    Wang, L.4    Zhou, Z.5    Zhao, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.