Application of capillary isotachophoresis-based multidimensional separations coupled with electrospray ionization-tandem mass spectrometry for characterization of mouse brain mitochondrial proteome

Electrophoresis

Volumn 29, Issue 10, 2008, Pages 2215-2223

  Fang, Xueping ^a   Wang, Weijie ^b   Chandrasekaran, Krish ^c   Kristian, Tibor ^c   Balgley, Brian M ^b   Lee, Cheng S ^a  

^a Bldg 142   (United States)

^b Calibrant Biosystems Inc   (United States)

^c UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

Author keywords

Capillary electrophoresis; Capillary isotachophoresis; Electrospray ionization mass spectrometry; Mitochondria; Proteomics

Indexed keywords

CAPILLARY ELECTROPHORESIS; ELECTROSPRAY IONIZATION; MAMMALS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PEPTIDES;

CAPILLARY ISOTACHOPHORESIS; ELECTROSPRAY IONIZATION MASS SPECTROMETRY; MITOCHONDRIAL PROTEIN; MITOCHONDRIAS; MOUSE BRAIN; NON-REDUNDANT; PROTEIN IDENTIFICATION; PROTEOMICS; REFERENCE SET; SWISS-PROT;

MITOCHONDRIA;

MITOCHONDRIAL PROTEIN;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; BRAIN MITOCHONDRION; C57BL 6 MOUSE; CAPILLARY ZONE ELECTROPHORESIS; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; ISOTACHOPHORESIS; LIQUID CHROMATOGRAPHY; MALE; MITOCHONDRION; MOUSE; NONHUMAN; PEPTIDE MAPPING; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN ISOLATION; PROTEOMICS; REPRODUCIBILITY; SYNAPTIC MEMBRANE;

EID: 44649167770     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200700609     Document Type: Article

References (67)

1. Green, D. R., Reed, J. C., Science 1998, 281, 1309-1312.
2. Lenaz, G., Biochim. Biophys. Acta 1998, 1366, 53-67.
3. Schapira, A. H., Biochim, Biophys. Acta 1999, 1410, 99-102.
4. Leonard, J. V., Schapira, A. H., Lancet 2000, 355, 299-304.
5. Melov, S., Ann. N. Y. Acad. Sci. 2000, 908, 219-225.
6. Hirano, M., Davidson, M., DiMauro, S., Curr. Opin. Cardiol. 2001, 16, 201-210.
7. Lopez, M. F., Melov, S., Circ. Res. 2002, 90, 380-389.
8. Boveris, A., Cadenas, E., Stoppani, A. O. M., Biochem. J. 1976, 156, 435-444.
9. Raha, S., McEachern, G. E., Myint, A. T., Robinson, B. H., Free Radic. Biol. Med. 2000, 29, 170-180.
10. Harman, D. J., Am. Geriatr. Soc. 1972, 20, 145-147.
11. Chang, J., Van Remmen, H., Cornell, J., Richardson, A., Ward, W. F., Mech. Aging Dev. 2003, 124, 33-41.
12. Lithgow, T., FEBS Lett. 2000, 476, 22-26.
13. Koehler, C. M., FEBS Lett. 2000, 476, 27-31.
14. McDonald, T. G., Van Eyk, J. E., Basic Res. Cardiol. 2003, 98, 219-227.
15. Lopez, M. F., Kristal, B. S., Chernokalskays, E., Lazarev, A. et al., Electrophoresis 2000, 21, 3427-3440.
16. Hanson, B. J., Schulenberg, B., Patton, W. F., Capaldi, R. A., Electrophoresis 2001, 22, 950-959.
17. Sickmann, A., Reinders, J., Wagner, Y., Joppich, C. et al., Proc. Natl. Acad. Sci. USA 2003, 100, 13207-13212.
18. Reinders, J., Zahedi, R. P., Pfanner, N., Meisinger, C., Sickmann, A., J. Proteome Res. 2006, 5, 1543-1554.
19. McDonald, T., Sheng, S., Stanley, B., Chen, D. et al., Mol. Cell. Proteomics 2006, 5, 2392-2411.
20. Pflieger, D., Le Caer, J.-P., Lemaire, C., Bernard, B. A. et al., Anal. Chem. 2002, 74, 2400-2406.
21. Taylor, S. W., Warnock, D. E., Glenn, G. M., Zhang, B. et al., J. Proteome Res. 2002, 1, 451-458.
22. Taylor, S. W., Fahy, E., Zhang, B., Glenn, G. M. et al., Nat. Biotechnol. 2003, 21, 281-286.
23. Mootha, V. K., Bunkenborg, J., Olsen, J. V., Hjerrild, M. et al., Cell 2003, 115, 629-640.
24. Gaucher, S. P., Taylor, S. W., Fahy, E., Zhang, B. et al., J. Proteome Res. 2004, 3, 495-505.
25. Prokisch, H., Scharfe, C., Camp, D. G., II, Xiao, W. et al., PLoS Biol. 2004, 2, e160.
26. Arnold, R. J., Hrncirova, P., Annaiah, K., Novotny, M. V., J. Proteome Res. 2004, 3, 653-657.
27. Rezaul, K., Wu, L., Mayya, V., Hwang, S. I., Han, D., Mol. Cell. Proteomics 2005, 4, 169-181.
28. Jiang, X. S., Dai, J., Sheng, Q. H., Zhang, L. et al., Mol. Cell. Proteomics 2005, 4, 12-34.
29. Kislinger, T., Cox, B., Kannan, A., Chung, C. et al., Cell 2006, 125, 173-186.
30. Forner, F., Foster, L. J., Campanaro, S., Valle, G., Mann, M., Mol. Cell. Proteomics 2006, 5, 608-619.
31. Johnson, D. T., Harris, R. A., French, S., Blair, P. V. et al., Am. J. Physiol. Cell Physiol. 2007, 292, C698-C707.
32. DiMauro, S., Schon, E. A., Nat. Genet. 1998, 19, 214-215.
33. Taylor, S. W., Fahy, E., Ghosh, S. S., Trends Biotechnol. 2003, 21, 82-88.
34. Calvo, S., Mohit, J., Xie, X., Sheth, S. A. et al., Nat. Genet. 2006, 38, 576-582.
35. Stegehuis, D. S., Irth, H., Tjaden, U. R., Van Der Greef, J., J. Chromatogr. 1991, 538, 393-402.
36. Foret, F., Szoko, E., Karger, B. L., Electrophoresis 1993, 14, 417-428.
37. Gebauer, P., Boček, P., Electrophoresis 2000, 21, 3898-3904.
38. An, Y., Cooper, J. W., Balgley, B. M., Lee, C. S., Electrophoresis 2006, 27, 3599-3608.
39. Fang, X., Yang, L., Wang, W., Song, T. et al., Anal. Chem. 2007, 79, 5785-5792.
40. Chandrasekaran, K., Hazelton, J. L., Wang, Y., Fiskum, G., Kristian, T., J. Neurosci. 2006, 26, 13123-13127.
41. Dunkley, P. R., Heath, J. W., Harrison, S. M., Jarvie, R E. et al., Brain Res. 1988, 441, 59-71.
42. Brown, M. R., Sullivan, P. G., Dorenbos, K. A., Modafferi, E. A. et al., J. Neurosci. Methods 2004, 737, 299-303.
43. Kristian, T., Hopkins, I. B., McKenna, M. C., Fiskum, G., J. Neurosci. Methods 2006, 152, 136-143.
44. Yang, L., Lee, C. S., Hofstadler, S. A., Pasa-Tolic, L., Smith, R. D., Anal. Chem. 1998, 70, 3235-3241.
45. Geer, L. Y., Markey, S. P., Kowalak, J. A., Wagner, L. et al., J. Proteome Res. 2004, 3, 958-964.
46. Elias, J. E., Haas, W., Faherty, B. K., Gygi, S. P., Nat. Methods 2005, 2, 667-675.
47. Balgley, B. M., Laudeman, T., Yang, L., Song, T., Lee, C. S., Mol. Cell. Proteomics 2007, 6, 1599-1608.
48. Mohan, D., Shen, Y, Smith, R. D., Lee, C. S., Electrophoresis 2002, 23, 3160-3167.
49. Mohan, D., Pasa-Tolic, L., Masselon, C. D., Tolic, N. et al., Anal. Chem. 2003, 75, 4432-4440.
50. Chen, J., Balgley, B. M., DeVoe, D. L., Lee, C. S., Anal. Chem. 2003, 75, 3145-3152.
51. Wang, Y., Rudnick, P. A., Evans, E. L., Zhuang, Z. et al., Anal. Chem. 2005, 77, 6549-6556.
52. Guo, T., Rudnick, P. A., Wang, W., Lee, C. S. et al., J. Proteome Res. 2006, 5, 1469-1478.
53. Wang, W., Guo, T., Rudnick, P. A., Song, T. et al., Anal. Chem. 2007, 79, 1002-1009.
54. Wolters, D. A., Washburn, M. P., Yates, J. R., III, Anal. Chem. 2001, 73, 5683-5690.
55. Motoyama, A., Venable, J. D., Ruse, C. I., Yates, J. R., III, Anal. Chem. 2006, 78, 5109-5118.
56. Liu, H., Sadygov, R. G., Yates, J. R., III, Anal. Chem. 2004, 76, 4193-4201.
57. Elias, J. E., Gygi, S. P., Nat. Methods 2007, 4, 207-214.
58. Prokisch, H., Andreoli, C., Ahting, U., Heiss, K. et al., Nucleic Acids Res. 2006, 34, D705-D711.
59. Andreoli, C., Prokisch, H., Hortnagel, K., Mueller, J. C. et al., Nucleic Acids Res. 2004, 32, D459-D462.
60. Kuwana, T., Smith, J. J., Muzio, M., Dixit, V. et al., J. Biol. Chem. 1998, 273, 16589-16594.
61. Susin, S. A., Lorenzo, H. K., Zamzami, N. I., Marzo, A. et al., Nature 1999, 397, 441-446.
62. Nicholls, D. G., Budd, S. L., Physiol. Rev. 2000, 80, 315-360.
63. Kagan, V. E., Tyurina, Y. Y., Ann. N. Y. Acad. Sci. 1998, 854, 425-434.
64. Gunter, T. E., Buntinas, L., Sparagna, G. C., Gunter, K. K., Biochim. Biophys. Acta 1998, 1366, 5-15.
65. Beckman, K. B., Ames, B. N., Physiol. Rev. 1998, 78, 547-581.
66. Kovacic, P., Jacintho, J. D., Curr. Med. Chem. 2001, 8, 773-796.
67. Verma, M., Kagan, J., Sidransky, D., Srivastava, S., Nat. Rev. Cancer 2003, 3, 789-795.