Capillary isoelectric focusing-based multidimensional concentration/separation platform for proteome analysis

Analytical Chemistry

Volumn 75, Issue 13, 2003, Pages 3145-3152

  Chen, Jinzhi ^a   Balgley, Brian M ^b,d   DeVoe, Donald L ^c,d   Lee, Cheng S ^a,d  

^a Bldg 142   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

^c UNIVERSITY OF MARYLAND   (United States)

^d Calibrant Biosystems Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAPILLARITY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; ION EXCHANGE; MIXTURES; POLYPEPTIDES; SEPARATION; YEAST;

CAPILLARY ISOELECTRIC FOCUSING (CIEF);

PROTEINS;

FUNGAL PROTEIN; PROTEOME;

ARTICLE; CAPILLARY ELECTROPHORESIS; CODON; CONCENTRATION (PARAMETERS); DIFFUSION; ION EXCHANGE CHROMATOGRAPHY; ISOELECTRIC FOCUSING; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; PROTEIN ANALYSIS; YEAST;

CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, CAPILLARY; ISOELECTRIC FOCUSING; PEPTIDE FRAGMENTS; PROTEOME; REPRODUCIBILITY OF RESULTS; SACCHAROMYCES CEREVISIAE PROTEINS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TRYPSIN;

EID: 0037999986     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac034014+     Document Type: Article

References (40)

1. Persidis, A. Nature Biotechnol. 1998, 16, 393.
2. Hood, L. J. Proteome Res. 2002, 1, 399.
3. Klose, J.; Kobalz, U. Electrophoresis 1995, 16, 1034.
4. Jungblut, P.; Thiede, B.; Zimny-Arndt, U.; Muller, E.-C.; Scheler, C.; Wittmann-Liebold, B.; Otto, A. Electrophoresis 1996, 17, 839.
5. Rabilloud, T. Anal. Chem. 2000, 72, 48A.
6. Righetti, P. G.; Castagna, A.; Herbert, B. Anal. Chem. 2001, 73, 320A.
7. Gygi, S. P.; Corthals, G. L.; Zhang, Y.; Rochon, Y.; Aebersold, R. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 9390.
8. Smith, R. D. Nature Biotechnol. 2000, 18, 1041.
9. Tang, Q.; Harrata, A. K.; Lee, C. S. Anal. Chem. 1995, 67, 3515.
10. Tang, Q.; Harrata, A. K.; Lee, C. S. Anal. Chem. 1997, 69, 3177.
11. Jensen, P. K.; Pasa-Tolic, L.; Anderson, G. A.; Horner, J. A.; Lipton, M. S.; Bruce, J. E.; Smith, R. D. Anal. Chem. 1999, 71, 2076.
12. Wall, D. B.; Kachman, M. T.; Gong, S.; Hinderer, R.; Parus, S.; Misek, D. E.; Hanash, S. M.; Lubman, D. M. Anal. Chem. 2000, 72, 1099.
13. Kachman, M. T.; Wang, H.; Schwartz, D. R.; Cho, K. R.; Lubman, D. M. Anal. Chem. 2002, 74, 1779.
14. McCormack, A. L.; Schieltz, D. M.; Goode, B.; Yang, S.; Barnes, G.; Drubin, D.; Yates, J. R., III. Anal. Chem. 1997, 69, 767.
15. Link, A. J.; Eng, J.; Schieltz, D. M.; Carmack, E.; Mize, G.J.; Morris, D. R.; Garvik, B. M.; Yates, J. R., III. Nature Biotechnol. 1999, 17, 676.
16. Washburn, M. P.; Wolters, D.; Yates, J. R., III. Nature Biotechnol. 2001, 19, 242.
17. Wolters, D. A.; Washburn, M. P.; Yates, J. R., III. Anal. Chem. 2001, 73, 5683.
18. Washburn, M. P.; Ulaszek, R.; Deciu, C.; Schieltz, D. M.; Yates, J. R., III. Anal. Chem. 2002, 74, 1650.
19. Li, W.; Hendrickson, C. L.; Emmett, M. R.; Marshall, A. G. Anal. Chem. 1999, 71, 4397.
20. Martin, S. E.; Shabanowitz, J.; Hunt, D. F.; Marto, J. A. Anal. Chem. 2000, 72, 4266.
21. Shen, Y.; Zhao, R.; Belov, M. E.; Conrads, T. P.; Anderson, G. A.; Tang, K.; Pasa-Tolic, L.; Veenstra, T. D.; Lipton, M. S.; Udseth, H. R.; Smith, R. D. Anal. Chem. 2001, 73, 1766.
22. Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Nature Biotechnol. 1999, 17, 994.
23. Han, D. K.; Eng, J.; Zhou, H.; Aebersold, R. Nature Biotechnol. 2001, 19, 946.
24. Gygi, S. P.; Rist, B.; Griffin, T. J.; Eng, J.; Aebersold, R. J. Proteome Res. 2002, 1, 47.
25. VerBerkmoes, N. C.; Bundy, J. L.; Hauser, L.; Asano, K. G.; Razumovskaya, J.; Larimer, F.; Hettich, R. L.; Stephenson, J. J., Jr. J. Proteome Res. 2002, 1, 239.
26. Bonner, R. F.; Emmert-Buck, M. R.; Cole, K.; Pohida, T.; Chuaqui, R.; Goldstein, S.; Liotta, L. A. Science 1997, 278, 1481.
27. Hsieh, S.; Jorgenson, J. W. Anal. Chem. 1996, 68, 1212.
28. MacNair, J. E.; Lewis, K. C.; Jorgenson, J. W. Anal. Chem. 1997, 69, 983.
29. Quenzer, T. L.; Emmett, M. R.; Hendrickson, C. L.; Kelly, P. H.; Marshall, A. G. Anal. Chem. 2001, 73, 1721.
30. Shen, Y.; Zhao, R.; Berger, S. J.; Anderson, G. A.; Rodriguez, N.; Smith, R. D. Anal. Chem. 2002, 74, 4235.
31. Pasa-Tolic, L.; Harkewicz, R.; Anderson, G. A.; Tolic, N.; Shen, Y.; Zhao, R.; Thrall, B.; Masselon, C.; Smith, R. D. J. Am. Soc. Mass Spectrom. 2002, 13, 954.
32. Conti, M.; Gelfi, C.; Righetti, P. G. Electrophoresis 1995, 16, 1485.
33. Conti, M.; Galassi, M.; Bossi, A.; Righetti, P. G. J. Chromatogr., A 1997, 757, 237.
34. Chen, J.; Baehrecke, E. H.; Shen, Y.; Smith, R. D.; Lee, C. S. Electrophoresis 2002, 23, 3143.
35. Schleif, R. F.; Wensink, P. C. Practical Methods in Molecular Biology; Springer-Verlag: New York, 1981; Chapter 1.
36. Shen, Y.; Smith R. D. J. Microcolumn Sep. 2000, 12, 135.
37. Yates, J. R., III; Carmack, E.; Hays, L.; Link, A. J.; Eng, J. K. Methods Mol. Biol. 1999, 112, 553.
38. Rodriguez-Diaz, R.; Wehr, T.; Zhu, M.; Levi, V. Capillary Isoelectric Focusing. In Handbook of Capillary Electrophoresis: Landers, J. P., Ed.; CRC Press: Boca Raton, FL, 1997; p 101.
39. Mohan, D.; Lee, C. S. J. Chromatogr., A 2002, 979, 271.
40. Juraschek, R.; Dulcks, T.; Karas, M. J. Am. Soc. Mass Spectrom. 1999, 10, 300.