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Volumn 2, Issue 6, 2004, Pages

Integrative analysis of the mitochondrial proteome in yeast

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME; MITOCHONDRIAL PROTEIN;

EID: 16644368723     PISSN: 15449173     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pbio.0020160     Document Type: Article
Times cited : (171)

References (40)
  • 1
    • 0033199506 scopus 로고    scopus 로고
    • Association between the endoplasmic reticulum and mitochondria of yeast facilitates interorganelle transport of phospholipids through membrane contact
    • Find this article online
    • Achleitner G, Gaigg B, Krasser A, Kainersdorfer E, Kohlwein SD, et al. (1999) Association between the endoplasmic reticulum and mitochondria of yeast facilitates interorganelle transport of phospholipids through membrane contact. Eur J Biochem 264: 545-553. Find this article online
    • (1999) Eur J Biochem , vol.264 , pp. 545-553
    • Achleitner, G.1    Gaigg, B.2    Krasser, A.3    Kainersdorfer, E.4    Kohlwein, S.D.5
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Find this article online
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. Find this article online
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 3
    • 0347269094 scopus 로고    scopus 로고
    • MitoP2: An integrated database on mitochondrial proteins in yeast and man
    • Find this article online
    • Andreoli C, Prokisch H, Hortnagel K, Mueller JC, Munsterkotter M, et al. (2004) MitoP2: An integrated database on mitochondrial proteins in yeast and man. Nucleic Acids Res 32: D459-D462. Find this article online
    • (2004) Nucleic Acids Res , vol.32
    • Andreoli, C.1    Prokisch, H.2    Hortnagel, K.3    Mueller, J.C.4    Munsterkotter, M.5
  • 4
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • Find this article online
    • DeRisi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686. Find this article online
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 5
    • 0034655980 scopus 로고    scopus 로고
    • Disruption of cytoplasmic and mitochondrial folylpolyglutamate synthetase activity in Saccharomyces cerevisiae
    • Find this article online
    • DeSouza L, Shen Y, Bognar AL (2000) Disruption of cytoplasmic and mitochondrial folylpolyglutamate synthetase activity in Saccharomyces cerevisiae. Arch Biochem Biophys 376: 299-312. Find this article online
    • (2000) Arch Biochem Biophys , vol.376 , pp. 299-312
    • DeSouza, L.1    Shen, Y.2    Bognar, A.L.3
  • 6
    • 0031804542 scopus 로고    scopus 로고
    • Nuclear power and mitochondrial disease
    • Find this article online
    • DiMauro S, Schon EA (1998) Nuclear power and mitochondrial disease. Nat Genet 19: 214-215. Find this article online
    • (1998) Nat Genet , vol.19 , pp. 214-215
    • DiMauro, S.1    Schon, E.A.2
  • 7
    • 0036198860 scopus 로고    scopus 로고
    • Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae
    • Find this article online
    • Dimmer KS, Fritz S, Fuchs F, Messerschmitt M, Weinbach N, et al. (2002) Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae. Mol Biol Cell 13: 847-853. Find this article online
    • (2002) Mol Biol Cell , vol.13 , pp. 847-853
    • Dimmer, K.S.1    Fritz, S.2    Fuchs, F.3    Messerschmitt, M.4    Weinbach, N.5
  • 8
    • 0034714135 scopus 로고    scopus 로고
    • A Bayesian system integrating expression data with sequence patterns for localizing proteins: Comprehensive application to the yeast genome
    • Find this article online
    • Drawid A, Gerstein M (2000) A Bayesian system integrating expression data with sequence patterns for localizing proteins: Comprehensive application to the yeast genome. J Mol Biol 301: 1059-1075. Find this article online
    • (2000) J Mol Biol , vol.301 , pp. 1059-1075
    • Drawid, A.1    Gerstein, M.2
  • 9
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Find this article online
    • Eng JK, McCormack AL, Yates JR (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5: 976-989. Find this article online
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 10
    • 0042854999 scopus 로고    scopus 로고
    • Proteome analysis by mass spectrometry
    • Find this article online
    • Ferguson PL, Smith RD (2003) Proteome analysis by mass spectrometry. Annu Rev Biophys Biomol Struct 32: 399-424. Find this article online
    • (2003) Annu Rev Biophys Biomol Struct , vol.32 , pp. 399-424
    • Ferguson, P.L.1    Smith, R.D.2
  • 11
    • 0030747938 scopus 로고    scopus 로고
    • Human genetic diseases: A cross-talk between man and yeast
    • Find this article online
    • Foury F (1997) Human genetic diseases: A cross-talk between man and yeast. Gene 195: 1-10. Find this article online
    • (1997) Gene , vol.195 , pp. 1-10
    • Foury, F.1
  • 12
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Find this article online
    • Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147. Find this article online
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1    Bosche, M.2    Krause, R.3    Grandi, P.4    Marzioch, M.5
  • 13
    • 0142215475 scopus 로고    scopus 로고
    • Global analysis of protein expression in yeast
    • Find this article online
    • Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, et al. (2003) Global analysis of protein expression in yeast. Nature 425: 737-741. Find this article online
    • (2003) Nature , vol.425 , pp. 737-741
    • Ghaemmaghami, S.1    Huh, W.K.2    Bower, K.3    Howson, R.W.4    Belle, A.5
  • 14
    • 0028800976 scopus 로고
    • Isolation of highly purified mitochondria from Saccharomyces cerevisiae
    • Find this article online
    • Glick BS, Pon LA (1995) Isolation of highly purified mitochondria from Saccharomyces cerevisiae. Methods Enzymol 260: 213-223. Find this article online
    • (1995) Methods Enzymol , vol.260 , pp. 213-223
    • Glick, B.S.1    Pon, L.A.2
  • 15
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Find this article online
    • Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415: 180-183. Find this article online
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3    Bader, G.D.4    Moore, L.5
  • 16
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Find this article online
    • Huh WK, Falvo JV, Gerke LC, Carroll AS, Howson RW, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425: 686-691. Find this article online
    • (2003) Nature , vol.425 , pp. 686-691
    • Huh, W.K.1    Falvo, J.V.2    Gerke, L.C.3    Carroll, A.S.4    Howson, R.W.5
  • 17
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Find this article online
    • Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 98: 4569-4574. Find this article online
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5
  • 18
    • 0037087575 scopus 로고    scopus 로고
    • Subcellular localization of the yeast proteome
    • Find this article online
    • Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16: 707-719. Find this article online
    • (2002) Genes Dev , vol.16 , pp. 707-719
    • Kumar, A.1    Agarwal, S.2    Heyman, J.A.3    Matson, S.4    Heidtman, M.5
  • 19
    • 0037263985 scopus 로고    scopus 로고
    • Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state
    • Find this article online
    • Lascaris R, Bussemaker HJ, Boorsma A, Piper M, van der Spek H, et al. (2003) Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state. Genome Biol 4: R3. Find this article online
    • (2003) Genome Biol , vol.4
    • Lascaris, R.1    Bussemaker, H.J.2    Boorsma, A.3    Piper, M.4    Van Der Spek, H.5
  • 20
    • 0037143692 scopus 로고    scopus 로고
    • Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
    • Find this article online
    • Lipton MS, Pasa-Tolic L, Anderson GA, Anderson DJ, Auberry DL, et al. (2002) Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc Natl Acad Sci U S A 99: 11049-11054. Find this article online
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 11049-11054
    • Lipton, M.S.1    Pasa-Tolic, L.2    Anderson, G.A.3    Anderson, D.J.4    Auberry, D.L.5
  • 21
    • 0036200898 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNAs targeted to yeast mitochondria
    • Find this article online
    • Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, et al. (2002) Genome-wide analysis of mRNAs targeted to yeast mitochondria. EMBO Rep 3: 159-164. Find this article online
    • (2002) EMBO Rep , vol.3 , pp. 159-164
    • Marc, P.1    Margeot, A.2    Devaux, F.3    Blugeon, C.4    Corral-Debrinski, M.5
  • 22
  • 23
    • 0032972509 scopus 로고    scopus 로고
    • PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization
    • Find this article online
    • Nakai K, Horton P (1999) PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci 24: 34-36. Find this article online
    • (1999) Trends Biochem Sci , vol.24 , pp. 34-36
    • Nakai, K.1    Horton, P.2
  • 24
    • 1042266670 scopus 로고    scopus 로고
    • The yeast mitochondrial proteome: A study of fermentative and respiratory growth
    • Find this article online
    • Ohlmeier S, Kastaniotis AJ, Hiltunen JK, Bergmann U (2003) The yeast mitochondrial proteome: A study of fermentative and respiratory growth. J Biol Chem 279: 3956-3979. Find this article online
    • (2003) J Biol Chem , vol.279 , pp. 3956-3979
    • Ohlmeier, S.1    Kastaniotis, A.J.2    Hiltunen, J.K.3    Bergmann, U.4
  • 25
    • 0037370373 scopus 로고    scopus 로고
    • Proteomics: The first decade and beyond
    • Find this article online
    • Patterson SD, Aebersold RH (2003) Proteomics: The first decade and beyond. Nat Genet 33: (Suppl): 311-323. Find this article online
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 311-323
    • Patterson, S.D.1    Aebersold, R.H.2
  • 26
    • 0037093121 scopus 로고    scopus 로고
    • Systematic identification of mitochondrial proteins by LC-MS/MS
    • Find this article online
    • Pflieger D, Le Caer JP, Lemaire C, Bernard BA, Dujardin G, et al. (2002) Systematic identification of mitochondrial proteins by LC-MS/MS. Anal Chem 74: 2400-2406. Find this article online
    • (2002) Anal Chem , vol.74 , pp. 2400-2406
    • Pflieger, D.1    Le Caer, J.P.2    Lemaire, C.3    Bernard, B.A.4    Dujardin, G.5
  • 27
    • 0033954322 scopus 로고    scopus 로고
    • MITOP, the mitochondrial proteome database: 2000 Update
    • Find this article online
    • Scharfe C, Zaccaria P, Hoertnagel K, Jaksch M, Klopstock T, et al. (2000) MITOP, the mitochondrial proteome database: 2000 update. Nucleic Acids Res 28: 155-158. Find this article online
    • (2000) Nucleic Acids Res , vol.28 , pp. 155-158
    • Scharfe, C.1    Zaccaria, P.2    Hoertnagel, K.3    Jaksch, M.4    Klopstock, T.5
  • 28
    • 0035870175 scopus 로고    scopus 로고
    • Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics
    • Find this article online
    • Shen Y, Zhao R, Belov ME, Conrads TP, Anderson GA, et al. (2001) Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics. Anal Chem 73: 1766-1775. Find this article online
    • (2001) Anal Chem , vol.73 , pp. 1766-1775
    • Shen, Y.1    Zhao, R.2    Belov, M.E.3    Conrads, T.P.4    Anderson, G.A.5
  • 29
    • 0345687191 scopus 로고    scopus 로고
    • The proteome of Saccharomyces cerevisiae mitochondria
    • Find this article online
    • Sickmann A, Reinders J, Wagner Y, Joppich C, Zahedi R, et al. (2003) The proteome of Saccharomyces cerevisiae mitochondria. Proc Natl Acad Sci U S A 100: 13207-13212. Find this article online
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 13207-13212
    • Sickmann, A.1    Reinders, J.2    Wagner, Y.3    Joppich, C.4    Zahedi, R.5
  • 30
    • 2942589051 scopus 로고    scopus 로고
    • Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences
    • In press
    • Small I, Peeters N, Legeai F, Lurin C (2004) Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics In press.
    • (2004) Proteomics
    • Small, I.1    Peeters, N.2    Legeai, F.3    Lurin, C.4
  • 31
    • 0036253914 scopus 로고    scopus 로고
    • An accurate mass tag strategy for quantitative and high-throughput proteome measurements
    • Find this article online
    • Smith RD, Anderson GA, Lipton MS, Pasa-Tolic L, Shen Y, et al. (2002) An accurate mass tag strategy for quantitative and high-throughput proteome measurements. Proteomics 2: 513-523. Find this article online
    • (2002) Proteomics , vol.2 , pp. 513-523
    • Smith, R.D.1    Anderson, G.A.2    Lipton, M.S.3    Pasa-Tolic, L.4    Shen, Y.5
  • 33
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Find this article online
    • Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623-627. Find this article online
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3    Mansfield, T.A.4    Judson, R.S.5
  • 34
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • Find this article online
    • von Mering C, Krause R, Snel B, Cornell M, Oliver SG, et al. (2002) Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417: 399-403. Find this article online
    • (2002) Nature , vol.417 , pp. 399-403
    • Von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5
  • 35
    • 0033525773 scopus 로고    scopus 로고
    • Mitochondrial diseases in man and mouse
    • Find this article online
    • Wallace DC (1999) Mitochondrial diseases in man and mouse. Science 283: 1482-1488. Find this article online
    • (1999) Science , vol.283 , pp. 1482-1488
    • Wallace, D.C.1
  • 36
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Find this article online
    • Washburn MP, Wolters D, Yates JR (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19: 242-247. Find this article online
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 37
    • 0037453060 scopus 로고    scopus 로고
    • Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
    • Find this article online
    • Washburn MP, Koller A, Oshiro G, Ulaszek RR, Plouffe D, et al. (2003) Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 100: 3107-3112. Find this article online
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 3107-3112
    • Washburn, M.P.1    Koller, A.2    Oshiro, G.3    Ulaszek, R.R.4    Plouffe, D.5
  • 38
    • 0037337777 scopus 로고    scopus 로고
    • 'Omics' of the mitochondrion
    • Find this article online
    • Westermann B, Neupert W (2003) 'Omics' of the mitochondrion. Nat Biotechnol 21: 239-240. Find this article online
    • (2003) Nat Biotechnol , vol.21 , pp. 239-240
    • Westermann, B.1    Neupert, W.2
  • 39
    • 0038561131 scopus 로고    scopus 로고
    • A method for the comprehensive proteomic analysis of membrane proteins
    • Find this article online
    • Wu CC, MacCoss MJ, Howell KE, Yates JR (2003) A method for the comprehensive proteomic analysis of membrane proteins. Nat Biotechnol 21: 532-538. Find this article online
    • (2003) Nat Biotechnol , vol.21 , pp. 532-538
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Yates, J.R.4
  • 40
    • 10744226861 scopus 로고    scopus 로고
    • Improved proteome analysis of Saccharomyces cerevisiae mitochondria by free-flow electrophoresis
    • Find this article online
    • Zischka H, Weber G, Weber PJ, Posch A, Braun RJ, et al. (2003) Improved proteome analysis of Saccharomyces cerevisiae mitochondria by free-flow electrophoresis. Proteomics 3: 906-916. Find this article online
    • (2003) Proteomics , vol.3 , pp. 906-916
    • Zischka, H.1    Weber, G.2    Weber, P.J.3    Posch, A.4    Braun, R.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.