Gene-centromere mapping of 312 loci in pink salmon by half-tetrad analysis

Genome

Volumn 43, Issue 3, 2000, Pages 538-549

  Lindner, K R ^a   Seeb, J E ^b   Habicht, C ^b   Knudsen, K L ^a   Kretschmer, E ^b   Reedy, D J ^a   Spruell, P ^a   Allendorf, F W ^a  

^a UNIVERSITY OF MONTANA   (United States)

^b ALASKA DEPARTMENT OF FISH AND GAME   (United States)

Author keywords

AFLP; Isoloci; Meiosis; Microsatellites; Oncorhynchus gorbuscha

Indexed keywords

ALLOENZYME; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; CENTROMERE; CROSSING OVER; DIPLOIDY; GENE LOCUS; GENE SEGREGATION; GENETIC RECOMBINATION; MICROSATELLITE DNA;

ONCORHYNCHUS GORBUSCHA; SALMONIDAE;

EID: 0033853966     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g00-016     Document Type: Article

References (52)

1. Aebersold, P.B., Winans, G.A., Teel, D.J., Milner, G.B., and Utter, F.M. 1987. Manual for starch gel electrophoresis: A method for the detection of genetic variation. NOAA Technical Report NMFS 61. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service.
2. Allendorf, F.W., and Danzmann, R.G. 1997. Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in male rainbow trout. Genetics, 145: 1083-1092.
3. Allendorf, F.W., and Seeb, L.W. 2000. Concordance of genetic divergence among sockeye salmon populations at allozyme, nuclear DNA, and mtDNA markers. Evolution, 54(2). In press.
4. Allendorf, F.W., and Thorgaard, G.H. 1984. Tetraploidy and the evolution of salmonid fishes. In Evolutionary Genetics of Fishes. Edited by B.J. Turner. Plenum Publishing Corp., New York. pp. 1-53.
5. Allendorf, F.W., and Waples, R.S. 1996. Conservation and genetics of salmonid fishes. In Conservation Genetics: Case Histories from Nature. Edited by J.C. Avise, and J.L. Hamrick. Chapman & Hall, New York. pp. 238-280.
6. Allendorf, F.W., Seeb, J.E., Knudsen, K.L., Thorgaard, G.H., and Leary, R.F. 1986. Gene-centromere mapping of 25 loci in rainbow trout. J. Hered. 77: 307-312.
7. Alonso-Blanco, C., Peters, A.J.M., Koornneef, M., Lister, C., Dean, C., Van den Bosch, N., Pot, J., and Kuiper, M.T.R. 1998. Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J. 14: 259-271.
8. Arai, K., Fujino, K., Sei, N., Chiba, T., and Kawamura, M. 1991. Estimating rate of gene-centromere recombination at 11 isozyme loci in Salvelinus species. Bull. Jpn. Soc. Sci. Fish. 57: 1043-1055.
9. Banks, M.A., Blouin, M.S., Baldwin, B.A., Rashbrook, V.K., Fitzgerald, H.A., Blankenship, S.M., and Hedgecock, D. 1999. Isolation and inheritance of novel microsatellites in chinook salmon (Oncorhynchus tschawytscha). J. Hered. 90: 281-288.
10. Burnham, C.R. 1962. Discussions in Cytogenetics. Burgess Publ. Co., St. Paul, Minn.
11. Condrey, M.J., and Bentzen, P. 1998. Characterization of coastal cutthroat trout (Oncorhynchus clarki clarki) microsatellites, and their conservation in other salmonids. Mol. Ecol. 7: 787-789.
12. Estoup, A., Presa, P., Kreig, F., Vaiman, D., and Guyomard, R. 1993. (CT)n and (GT)n microsatellites: A new class of genetic markers for Salmo trutta L. (brown trout). Heredity, 71: 488-496.
13. Ganal, M.W., Lapitan, N.L.V., and Tanksley, S.D. 1989. Pulsed field gel electrophoresis and physical mapping of large DNA fragments in the Tm-2a region of chromosome 9 in tomato. Mol. Gen. Genet. 225: 501-509.
14. Gharrett, A.J., Smoker, W.W., Reisenbichler, R.R., and Taylor, S.G. 1999. Outbreeding depression in hybrids between odd- and even-broodyear pink salmon. Aquaculture, 173: 117-130.
15. Greene, B.A., and Seeb, J.E. 1997. SINE and transposon sequences generate high-resolution DNA fingerprints, "SINE prints," that exhibit faithful Mendelian inheritance in pink salmon (Oncorhynchus gorbuscha). Mol. Mar. Biol. Biotechnol. 6: 328-338.
16. Grewe, P.M., Billington, N., and Hebert, P.D.N. 1990. Phylogenetic relationships among members of Salvelinus inferred from mitochondrial DNA divergence. Can. J. Fish. Aquat. Sci. 47: 984-991.
17. Guyomard, R. 1986. Gene segregation in gynogenetic brown trout (Salmo trutta L.): Systematically high frequencies of post-reduction. Genet. Sel. Evol. 18: 385-392.
18. Heard, W.R. 1991. Life history of pink salmon (Oncorhynchus gorbuscha). In Pacific Salmon Life Histories. Edited by C. Groot and L. Margolis. UBC Press, Vancouver, B.C., Canada. pp. 119-230.
19. Jeffreys, A.J., Wilson, V., and Thein, S.L. 1985. Hypervariable "minisatellite" regions in human DNA. Nature, 314: 67-73.
20. Johnson, K.R., Wright, J.E., and May, B. 1987. Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics, 116: 579-591.
21. Johnson, S.L., Gates, M.A., Johnson, M., Talbot, W.S., Horne, S., Baik, K., Rude, S., Wong, J.R., and Postlethwait, J.H. 1996. Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics, 142: 1277-1288.
22. Keim, P., Schupp, J.M., Travis, S.E., Clayton, K., Zhu, T., Shi, L.A., Ferreira, A., and Webb, D.M. 1997. A high-density soybean genetic map based on AFLP markers. Crop Sci. 37: 537-543.
23. May, B., and Johnson, K.R. 1993. Composite linkage map of salmonid fishes (Salvelinus, Salmo, Oncorhynchus). In Genetic Maps: Locus Maps of Complex Genomes. Book 4. Edited by S.J. O'Brien. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. pp. 4309-4317.
24. May, B., Johnson, K.R., and Wright, J.E. 1989. Sex linkage in salmonids: Evidence from a hybridized genome of brook trout and Arctic charr. Biochem. Genet. 27: 291-301.
25. McConnell, S.K., O'Reilly, P.T., Hamilton, L, Wright, J.M., and Bentzen, P. 1995. Polymorphic microsatellite loci from Atlantic salmon (Salmo salar): Genetic differentiation of North American and European populations. Can. J. Fish. Aquat. Sci. 52: 1863-1872.
26. Mueller, U.G., and Wolfenbarger, L.L. 1999. AFLP genotyping and fingerprinting. Trends Ecol. Evol. 14: 389-394.
27. Naruse, K., Shimada, A., and Shima, A. 1988. Gene-centromere mapping for 5 visible mutant loci in multiple recessive tester stock of the medaka (Oryzias latipes). Zool. Sci. 5: 489-492.
28. Nelson, R.J., and Beacham, T.D. 1999. Isolation and cross species amplification of microsatellite loci useful for study of Pacific salmon. Anim. Genet. 30: 228-229.
29. Olsen, J.B., Bentzen, P., and Seeb, J.E. 1998. Characterization of seven microsatellite loci derived from pink salmon. Mol. Ecol. 7: 1087-1089.
30. O'Reilly, P.T., Hamilton, L.C., McConnell, S.K., and Wright, J.M. 1996. Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Can. J. Fish. Aquat. Sci. 53: 2292-2298.
31. Phillips, R.B., and Kapuscinski, A.R. 1988. High frequency of translocation heterozygotes in odd-year populations of pink salmon (Oncorhynchus gorbuscha). Cytogenet. Cell Genet. 48: 178-182.
32. Qi, X., Stam, P., and Lindhout, P. 1998. Use of locus-specific AFLP markers to construct a high-density molecular map in barley. Theor. Appl. Genet. 96: 376-384.
33. Rice, W.R. 1989. Analyzing tables of statistical tests. Evolution, 43: 223-225.
34. Roberts, P.A. 1965. Difference in the behavior of eu- and heterochromatin: Crossing over. Nature, 205: 725-726.
35. Sakamoto, T., Okamoto, N., Nakamura, Y., and Sato, T. 1994. Dinucleotide-repeat polymorphism in DNA of rainbow trout and its application to fisheries science. J. Fish Biol. 44: 1093-1096.
36. Sakamoto, T., Danzmann, R.G., Gharb, K., Howard, P., Ozaki, A., Khoo, S.K., Worman, R.A., Okamoto, N., Ferguson, M.M., Holm, L.-E., Guyomard, R., and Hoyheim. 2000. A microsatellite linkage map of rainbow trout characterized by large sex-specific differences in recombination rates. Genetics, In press.
37. Sanchez, J.A., Clabby, C., Ramos, D., Blanco, G., Flavin, F., Vazquez, E., and Powell, R. 1996. Protein and microsatellite single locus variability in Salmo salar L. (Atlantic salmon). Heredity, 77: 423-432.
38. Scribner, K.T., Gust, J.R., and Fields, R.L. 1996. Isolation and characterization of novel microsatellite loci: Cross-species amplification and population genetic applications. Can. J. Fish Aquat. Sci. 53: 685-693.
39. Seeb, J.E., and Seeb, L.W. 1986. Gene mapping of isozyme loci in chum salmon (Oncorhynchus keta). J. Hered. 77: 399-402.
40. Seeb, J.E., Habicht, C., Templin, W.D., Shaklee, J.B., Seeb, L.W., and Utter, F.M. 1999. Allozyme and mtDNA variation describe ecologically important genetic structure of even-year pink salmon inhabiting Prince William Sound, Alaska. Ecol. Freshw. Fish, 8: 122-140.
41. Shaklee, J.B., Allendorf, F.W., Morizot, D.C., and Whitt, G.S. 1990. Gene nomenclature for protein-coding loci in fish. Trans. Am. Fish. Soc. 119: 2-15.
42. Slettan, A., Olsaker, I., and Lie, O. 1996. Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Anim. Genet. 27: 57-64.
43. Small, M.P., Beacham, T.D., Withler, R.E., and Nelson, R.J. 1998. Discriminating coho salmon (Oncorhynchus kisutch) populations within the Fraser River, British Columbia, using microsatellite DNA markers. Mol. Ecol. 7: 141-155.
44. Smith, C.T., Koop, B.F., and Nelson, R.J. 1998. Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmonids. Mol. Ecol. 11: 1614-1616.
45. Spruell, P., Pilgrim, K.L., Greene, B.A., Habicht, C., Knudsen, K.L., Lindner, K.R., Sage, G.K., Seeb, J.E., and Allendorf, F.W. 1999. Inheritance of nuclear DNA markers in haploid pink salmon embryos. J. Hered. 90: 289-296.
46. Streisinger, G., Singer, F., Walker, C., Knauber, D., and Dower, N. 1986. Segregation analyses and gene-centromere distances in zebrafish. Genetics, 112: 311-319.
47. Tanksley, S.D., Ganal, M.W., Prince, J.P., de Vicente, M.C., Bonierbale, M.W., Broun, P., Fulton, T.M., Giovannoni, J.J., Grandillo, S., Martin, G.B., Messeguer, R., Miller, J.C., Miller, L., Paterson, A.H., Pineda, O., Röder, M.S., Wing, R.A., Wu, W., and Young, D. 1992. High density molecular linkage maps of the tomato and potato genomes. Genetics, 132: 1141-1160.
48. Thorgaard, G.H., Allendorf, F.W., and Knudsen, K.L. 1983. Gene-centromere mapping in rainbow trout: High interference over long map distances. Genetics, 103: 771-783.
49. Wright, J.E., Johnson, K., Hollister, A., and May, B. 1983. Meiotic models to explain classical linkage, pseudolinkage and chromosome pairing in tetraploid derivative salmonids. In Isozymes: Current Topics in Biological and Medical Research. Edited by M.C. Rattazzi, J.G. Scandalios, and G.S. Whitt. Alan R. Liss, New York. pp. 239-260.
50. Young, W.P., Wheeler, P.A., Coryell, V.H., Keim, P., and Thorgaard, G.H. 1998. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics, 148: 1-13.
51. Young, W.P., Shupp, J.M., and Keim, P. 1999. DNA methylation and AFLP marker distribution in the soybean genome. Theor. Appl. Genet. 99: 785-792.
52. Zhao, H.Y., and Speed, T.P. 1998. Statistical analysis of half-tetrads. Genetics, 150: 473-48.