-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International-Human-Genome-Sequencing-Consortium. Initial sequencing and analysis of the human genome. Nature 409 (2001) 860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
International-Human-Genome-Sequencing-Consortium1
-
2
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
SanMiguel P., Tikhonov A., Jin Y.K., Motchoulskaia N., Zakharov D., Melake-Berhan A., Springer P.S., Edwards K.J., Lee M., Avramova Z., and Bennetzen J.L. Nested retrotransposons in the intergenic regions of the maize genome. Science 274 (1996) 765-768
-
(1996)
Science
, vol.274
, pp. 765-768
-
-
SanMiguel, P.1
Tikhonov, A.2
Jin, Y.K.3
Motchoulskaia, N.4
Zakharov, D.5
Melake-Berhan, A.6
Springer, P.S.7
Edwards, K.J.8
Lee, M.9
Avramova, Z.10
Bennetzen, J.L.11
-
3
-
-
33749522239
-
Genetics: junk DNA as an evolutionary force
-
Biemont C., and Vieira C. Genetics: junk DNA as an evolutionary force. Nature 443 (2006) 521-524
-
(2006)
Nature
, vol.443
, pp. 521-524
-
-
Biemont, C.1
Vieira, C.2
-
4
-
-
5644237959
-
The molecular phylogeny of trypanosomes: evidence for an early divergence of the Salivaria
-
Haag J., O'Huigin C., and Overath P. The molecular phylogeny of trypanosomes: evidence for an early divergence of the Salivaria. Mol. Biochem. Parasitol. 91 (1998) 37-49
-
(1998)
Mol. Biochem. Parasitol.
, vol.91
, pp. 37-49
-
-
Haag, J.1
O'Huigin, C.2
Overath, P.3
-
5
-
-
22244441812
-
The genome of the African trypanosome Trypanosoma brucei
-
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C., Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., and El-Sayed N.M. The genome of the African trypanosome Trypanosoma brucei. Science 309 (2005) 416-422
-
(2005)
Science
, vol.309
, pp. 416-422
-
-
Berriman, M.1
Ghedin, E.2
Hertz-Fowler, C.3
Blandin, G.4
Renauld, H.5
Bartholomeu, D.C.6
Lennard, N.J.7
Caler, E.8
Hamlin, N.E.9
Haas, B.10
Bohme, U.11
Hannick, L.12
Aslett, M.A.13
Shallom, J.14
Marcello, L.15
Hou, L.16
Wickstead, B.17
Alsmark, U.C.18
Arrowsmith, C.19
Atkin, R.J.20
Barron, A.J.21
Bringaud, F.22
Brooks, K.23
Carrington, M.24
Cherevach, I.25
Chillingworth, T.J.26
Churcher, C.27
Clark, L.N.28
Corton, C.H.29
Cronin, A.30
Davies, R.M.31
Doggett, J.32
Djikeng, A.33
Feldblyum, T.34
Field, M.C.35
Fraser, A.36
Goodhead, I.37
Hance, Z.38
Harper, D.39
Harris, B.R.40
Hauser, H.41
Hostetler, J.42
Ivens, A.43
Jagels, K.44
Johnson, D.45
Johnson, J.46
Jones, K.47
Kerhornou, A.X.48
Koo, H.49
Larke, N.50
Landfear, S.51
Larkin, C.52
Leech, V.53
Line, A.54
Lord, A.55
Macleod, A.56
Mooney, P.J.57
Moule, S.58
Martin, D.M.59
Morgan, G.W.60
Mungall, K.61
Norbertczak, H.62
Ormond, D.63
Pai, G.64
Peacock, C.S.65
Peterson, J.66
Quail, M.A.67
Rabbinowitsch, E.68
Rajandream, M.A.69
Reitter, C.70
Salzberg, S.L.71
Sanders, M.72
Schobel, S.73
Sharp, S.74
Simmonds, M.75
Simpson, A.J.76
Tallon, L.77
Turner, C.M.78
Tait, A.79
Tivey, A.R.80
Van Aken, S.81
Walker, D.82
Wanless, D.83
Wang, S.84
White, B.85
White, O.86
Whitehead, S.87
Woodward, J.88
Wortman, J.89
Adams, M.D.90
Embley, T.M.91
Gull, K.92
Ullu, E.93
Barry, J.D.94
Fairlamb, A.H.95
Opperdoes, F.96
Barrell, B.G.97
Donelson, J.E.98
Hall, N.99
Fraser, C.M.100
Melville, S.E.101
El-Sayed, N.M.102
more..
-
6
-
-
22244453726
-
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
-
El-Sayed N.M., Myler P.J., Bartholomeu D.C., Nilsson D., Aggarwal G., Tran A.N., Ghedin E., Worthey E.A., Delcher A.L., Blandin G., Westenberger S.J., Caler E., Cerqueira G.C., Branche C., Haas B., Anupama A., Arner E., Aslund L., Attipoe P., Bontempi E., Bringaud F., Burton P., Cadag E., Campbell D.A., Carrington M., Crabtree J., Darban H., da Silveira J.F., de Jong P., Edwards K., Englund P.T., Fazelina G., Feldblyum T., Ferella M., Frasch A.C., Gull K., Horn D., Hou L., Huang Y., Kindlund E., Klingbeil M., Kluge S., Koo H., Lacerda D., Levin M.J., Lorenzi H., Louie T., Machado C.R., McCulloch R., McKenna A., Mizuno Y., Mottram J.C., Nelson S., Ochaya S., Osoegawa K., Pai G., Parsons M., Pentony M., Pettersson U., Pop M., Ramirez J.L., Rinta J., Robertson L., Salzberg S.L., Sanchez D.O., Seyler A., Sharma R., Shetty J., Simpson A.J., Sisk E., Tammi M.T., Tarleton R., Teixeira S., Van Aken S., Vogt C., Ward P.N., Wickstead B., Wortman J., White O., Fraser C.M., Stuart K.D., and Andersson B. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science 309 (2005) 409-415
-
(2005)
Science
, vol.309
, pp. 409-415
-
-
El-Sayed, N.M.1
Myler, P.J.2
Bartholomeu, D.C.3
Nilsson, D.4
Aggarwal, G.5
Tran, A.N.6
Ghedin, E.7
Worthey, E.A.8
Delcher, A.L.9
Blandin, G.10
Westenberger, S.J.11
Caler, E.12
Cerqueira, G.C.13
Branche, C.14
Haas, B.15
Anupama, A.16
Arner, E.17
Aslund, L.18
Attipoe, P.19
Bontempi, E.20
Bringaud, F.21
Burton, P.22
Cadag, E.23
Campbell, D.A.24
Carrington, M.25
Crabtree, J.26
Darban, H.27
da Silveira, J.F.28
de Jong, P.29
Edwards, K.30
Englund, P.T.31
Fazelina, G.32
Feldblyum, T.33
Ferella, M.34
Frasch, A.C.35
Gull, K.36
Horn, D.37
Hou, L.38
Huang, Y.39
Kindlund, E.40
Klingbeil, M.41
Kluge, S.42
Koo, H.43
Lacerda, D.44
Levin, M.J.45
Lorenzi, H.46
Louie, T.47
Machado, C.R.48
McCulloch, R.49
McKenna, A.50
Mizuno, Y.51
Mottram, J.C.52
Nelson, S.53
Ochaya, S.54
Osoegawa, K.55
Pai, G.56
Parsons, M.57
Pentony, M.58
Pettersson, U.59
Pop, M.60
Ramirez, J.L.61
Rinta, J.62
Robertson, L.63
Salzberg, S.L.64
Sanchez, D.O.65
Seyler, A.66
Sharma, R.67
Shetty, J.68
Simpson, A.J.69
Sisk, E.70
Tammi, M.T.71
Tarleton, R.72
Teixeira, S.73
Van Aken, S.74
Vogt, C.75
Ward, P.N.76
Wickstead, B.77
Wortman, J.78
White, O.79
Fraser, C.M.80
Stuart, K.D.81
Andersson, B.82
more..
-
7
-
-
22244437571
-
The genome of the kinetoplastid parasite, Leishmania major
-
Ivens A.C., Peacock C.S., Worthey E.A., Murphy L., Aggarwal G., Berriman M., Sisk E., Rajandream M.A., Adlem E., Aert R., Anupama A., Apostolou Z., Attipoe P., Bason N., Bauser C., Beck A., Beverley S.M., Bianchettin G., Borzym K., Bothe G., Bruschi C.V., Collins M., Cadag E., Ciarloni L., Clayton C., Coulson R.M., Cronin A., Cruz A.K., Davies R.M., De Gaudenzi J., Dobson D.E., Duesterhoeft A., Fazelina G., Fosker N., Frasch A.C., Fraser A., Fuchs M., Gabel C., Goble A., Goffeau A., Harris D., Hertz-Fowler C., Hilbert H., Horn D., Huang Y., Klages S., Knights A., Kube M., Larke N., Litvin L., Lord A., Louie T., Marra M., Masuy D., Matthews K., Michaeli S., Mottram J.C., Muller-Auer S., Munden H., Nelson S., Norbertczak H., Oliver K., O′Neil S., Pentony M., Pohl T.M., Price C., Purnelle B., Quail M.A., Rabbinowitsch E., Reinhardt R., Rieger M., Rinta J., Robben J., Robertson L., Ruiz J.C., Rutter S., Saunders D., Schafer M., Schein J., Schwartz D.C., Seeger K., Seyler A., Sharp S., Shin H., Sivam D., Squares R., Squares S., Tosato V., Vogt C., Volckaert G., Wambutt R., Warren T., Wedler H., Woodward J., Zhou S., Zimmermann W., Smith D.F., Blackwell J.M., Stuart K.D., Barrell B., and Myler P.J. The genome of the kinetoplastid parasite, Leishmania major. Science 309 (2005) 436-442
-
(2005)
Science
, vol.309
, pp. 436-442
-
-
Ivens, A.C.1
Peacock, C.S.2
Worthey, E.A.3
Murphy, L.4
Aggarwal, G.5
Berriman, M.6
Sisk, E.7
Rajandream, M.A.8
Adlem, E.9
Aert, R.10
Anupama, A.11
Apostolou, Z.12
Attipoe, P.13
Bason, N.14
Bauser, C.15
Beck, A.16
Beverley, S.M.17
Bianchettin, G.18
Borzym, K.19
Bothe, G.20
Bruschi, C.V.21
Collins, M.22
Cadag, E.23
Ciarloni, L.24
Clayton, C.25
Coulson, R.M.26
Cronin, A.27
Cruz, A.K.28
Davies, R.M.29
De Gaudenzi, J.30
Dobson, D.E.31
Duesterhoeft, A.32
Fazelina, G.33
Fosker, N.34
Frasch, A.C.35
Fraser, A.36
Fuchs, M.37
Gabel, C.38
Goble, A.39
Goffeau, A.40
Harris, D.41
Hertz-Fowler, C.42
Hilbert, H.43
Horn, D.44
Huang, Y.45
Klages, S.46
Knights, A.47
Kube, M.48
Larke, N.49
Litvin, L.50
Lord, A.51
Louie, T.52
Marra, M.53
Masuy, D.54
Matthews, K.55
Michaeli, S.56
Mottram, J.C.57
Muller-Auer, S.58
Munden, H.59
Nelson, S.60
Norbertczak, H.61
Oliver, K.62
ONeil, S.63
Pentony, M.64
Pohl, T.M.65
Price, C.66
Purnelle, B.67
Quail, M.A.68
Rabbinowitsch, E.69
Reinhardt, R.70
Rieger, M.71
Rinta, J.72
Robben, J.73
Robertson, L.74
Ruiz, J.C.75
Rutter, S.76
Saunders, D.77
Schafer, M.78
Schein, J.79
Schwartz, D.C.80
Seeger, K.81
Seyler, A.82
Sharp, S.83
Shin, H.84
Sivam, D.85
Squares, R.86
Squares, S.87
Tosato, V.88
Vogt, C.89
Volckaert, G.90
Wambutt, R.91
Warren, T.92
Wedler, H.93
Woodward, J.94
Zhou, S.95
Zimmermann, W.96
Smith, D.F.97
Blackwell, J.M.98
Stuart, K.D.99
Barrell, B.100
Myler, P.J.101
more..
-
8
-
-
34347339518
-
Comparative genomic analysis of three Leishmania species that cause diverse human disease
-
Peacock C.S., Seeger K., Harris D., Murphy L., Ruiz J.C., Quail M.A., Peters N., Adlem E., Tivey A., Aslett M., Kerhornou A., Ivens A., Fraser A., Rajandream M.A., Carver T., Norbertczak H., Chillingworth T., Hance Z., Jagels K., Moule S., Ormond D., Rutter S., Squares R., Whitehead S., Rabbinowitsch E., Arrowsmith C., White B., Thurston S., Bringaud F., Baldauf S.L., Faulconbridge A., Jeffares D., Depledge D.P., Oyola S.O., Hilley J.D., Brito L.O., Tosi L.R., Barrell B., Cruz A.K., Mottram J.C., Smith D.F., and Berriman M. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat. Genet. 39 (2007) 839-847
-
(2007)
Nat. Genet.
, vol.39
, pp. 839-847
-
-
Peacock, C.S.1
Seeger, K.2
Harris, D.3
Murphy, L.4
Ruiz, J.C.5
Quail, M.A.6
Peters, N.7
Adlem, E.8
Tivey, A.9
Aslett, M.10
Kerhornou, A.11
Ivens, A.12
Fraser, A.13
Rajandream, M.A.14
Carver, T.15
Norbertczak, H.16
Chillingworth, T.17
Hance, Z.18
Jagels, K.19
Moule, S.20
Ormond, D.21
Rutter, S.22
Squares, R.23
Whitehead, S.24
Rabbinowitsch, E.25
Arrowsmith, C.26
White, B.27
Thurston, S.28
Bringaud, F.29
Baldauf, S.L.30
Faulconbridge, A.31
Jeffares, D.32
Depledge, D.P.33
Oyola, S.O.34
Hilley, J.D.35
Brito, L.O.36
Tosi, L.R.37
Barrell, B.38
Cruz, A.K.39
Mottram, J.C.40
Smith, D.F.41
Berriman, M.42
more..
-
9
-
-
10744220441
-
Gene synteny and evolution of genome architecture in trypanosomatids
-
Ghedin E., Bringaud F., Peterson J., Myler P., Berriman M., Ivens A., Andersson B., Bontempi E., Eisen J., Angiuoli S., Wanless D., Von Arx A., Murphy L., Lennard N., Salzberg S., Adams M.D., White O., Hall N., Stuart K., Fraser C.M., and El-Sayed N.M. Gene synteny and evolution of genome architecture in trypanosomatids. Mol. Biochem. Parasitol. 134 (2004) 183-191
-
(2004)
Mol. Biochem. Parasitol.
, vol.134
, pp. 183-191
-
-
Ghedin, E.1
Bringaud, F.2
Peterson, J.3
Myler, P.4
Berriman, M.5
Ivens, A.6
Andersson, B.7
Bontempi, E.8
Eisen, J.9
Angiuoli, S.10
Wanless, D.11
Von Arx, A.12
Murphy, L.13
Lennard, N.14
Salzberg, S.15
Adams, M.D.16
White, O.17
Hall, N.18
Stuart, K.19
Fraser, C.M.20
El-Sayed, N.M.21
more..
-
10
-
-
0002617455
-
-
Craig A.G., Craigie R., Gellert M., and Lambowitz A.M. (Eds), ASM Press, Washington, DC
-
Eickbush T.H., and Malik H.S. In: Craig A.G., Craigie R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), ASM Press, Washington, DC 1111-1144
-
(2002)
Mobile DNA II
, pp. 1111-1144
-
-
Eickbush, T.H.1
Malik, H.S.2
-
11
-
-
0025815642
-
Site-specific retrotransposons of the trypanosomatid protozoa
-
Aksoy S. Site-specific retrotransposons of the trypanosomatid protozoa. Parasitol. Today 7 (1991) 281-285
-
(1991)
Parasitol. Today
, vol.7
, pp. 281-285
-
-
Aksoy, S.1
-
12
-
-
0023131902
-
Ingi, a 5.2-kb dispersed sequence element from Trypanosoma brucei that carries half of a smaller mobile element at either end and has homology with mammalian LINEs
-
Kimmel B.E., Ole-MoiYoi O.K., and Young J.R. Ingi, a 5.2-kb dispersed sequence element from Trypanosoma brucei that carries half of a smaller mobile element at either end and has homology with mammalian LINEs. Mol. Cell. Biol. 7 (1987) 1465-1475
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 1465-1475
-
-
Kimmel, B.E.1
Ole-MoiYoi, O.K.2
Young, J.R.3
-
13
-
-
0023660569
-
Trypanosoma brucei repeated element with unusual structural and transcriptional properties
-
Murphy N.B., Pays A., Tebabi P., Coquelet H., Guyaux M., Steinert M., and Pays E. Trypanosoma brucei repeated element with unusual structural and transcriptional properties. J. Mol. Biol. 195 (1987) 855-871
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 855-871
-
-
Murphy, N.B.1
Pays, A.2
Tebabi, P.3
Coquelet, H.4
Guyaux, M.5
Steinert, M.6
Pays, E.7
-
14
-
-
0028902026
-
Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: homology of the first ORF with the ape family of DNA repair enzymes
-
Martin F., Maranon C., Olivares M., Alonso C., and Lopez M.C. Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: homology of the first ORF with the ape family of DNA repair enzymes. J. Mol. Biol. 247 (1995) 49-59
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 49-59
-
-
Martin, F.1
Maranon, C.2
Olivares, M.3
Alonso, C.4
Lopez, M.C.5
-
15
-
-
1542510039
-
The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei
-
Bringaud F., Biteau N., Zuiderwijk E., Berriman M., El-Sayed N.M., Ghedin E., Melville S.E., Hall N., and Baltz T. The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Mol. Biol. Evol. 21 (2004) 520-528
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 520-528
-
-
Bringaud, F.1
Biteau, N.2
Zuiderwijk, E.3
Berriman, M.4
El-Sayed, N.M.5
Ghedin, E.6
Melville, S.E.7
Hall, N.8
Baltz, T.9
-
16
-
-
30744459346
-
The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site-specificity for insertion
-
Bringaud F., Bartholomeu D.C., Blandin G., Delcher A., Baltz T., El-Sayed N.M., and Ghedin E. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site-specificity for insertion. Mol. Biol. Evol. 23 (2006) 411-420
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 411-420
-
-
Bringaud, F.1
Bartholomeu, D.C.2
Blandin, G.3
Delcher, A.4
Baltz, T.5
El-Sayed, N.M.6
Ghedin, E.7
-
17
-
-
0037057105
-
Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi
-
Bringaud F., García-Pérez J.L., Heras S.R., Ghedin E., El-Sayed N.M., Andersson B., Baltz T., and Lopez M.C. Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Mol. Biochem. Parasitol. 124 (2002) 73-78
-
(2002)
Mol. Biochem. Parasitol.
, vol.124
, pp. 73-78
-
-
Bringaud, F.1
García-Pérez, J.L.2
Heras, S.R.3
Ghedin, E.4
El-Sayed, N.M.5
Andersson, B.6
Baltz, T.7
Lopez, M.C.8
-
18
-
-
0021141004
-
Complete nucleotide sequence of an unusual mobile element from Trypanosoma brucei
-
Hasan G., Turner M.J., and Cordingley J.S. Complete nucleotide sequence of an unusual mobile element from Trypanosoma brucei. Cell 37 (1984) 333-341
-
(1984)
Cell
, vol.37
, pp. 333-341
-
-
Hasan, G.1
Turner, M.J.2
Cordingley, J.S.3
-
19
-
-
34848913443
-
Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania
-
Bringaud F., Muller M., Cerqueira G.C., Smith M., Rochette A., El-Sayed N.M., Papadopoulou B., and Ghedin E. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania. PLoS Pathog. 3 (2007) e136
-
(2007)
PLoS Pathog.
, vol.3
-
-
Bringaud, F.1
Muller, M.2
Cerqueira, G.C.3
Smith, M.4
Rochette, A.5
El-Sayed, N.M.6
Papadopoulou, B.7
Ghedin, E.8
-
20
-
-
0034058369
-
The short interspersed repetitive element of Trypanosoma cruzi, SIRE, is part of VIPER, an unusual retroelement related to long terminal repeat retrotransposons
-
Vazquez M., Ben-Dov C., Lorenzi H., Moore T., Schijman A., and Levin M.J. The short interspersed repetitive element of Trypanosoma cruzi, SIRE, is part of VIPER, an unusual retroelement related to long terminal repeat retrotransposons. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 2128-2133
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 2128-2133
-
-
Vazquez, M.1
Ben-Dov, C.2
Lorenzi, H.3
Moore, T.4
Schijman, A.5
Levin, M.J.6
-
21
-
-
30544451181
-
The VIPER elements of trypanosomes constitute a novel group of tyrosine recombinase-encoding retrotransposons
-
Lorenzi H.A., Robledo G., and Levin M.J. The VIPER elements of trypanosomes constitute a novel group of tyrosine recombinase-encoding retrotransposons. Mol. Biochem. Parasitol. 145 (2006) 184-194
-
(2006)
Mol. Biochem. Parasitol.
, vol.145
, pp. 184-194
-
-
Lorenzi, H.A.1
Robledo, G.2
Levin, M.J.3
-
22
-
-
30544435268
-
Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements
-
Bringaud F., Ghedin E., Blandin G., Bartholomeu D.C., Caler E., Levin M.J., Baltz T., and El-Sayed N.M. Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Mol. Biochem. Parasitol. 145 (2006) 158-170
-
(2006)
Mol. Biochem. Parasitol.
, vol.145
, pp. 158-170
-
-
Bringaud, F.1
Ghedin, E.2
Blandin, G.3
Bartholomeu, D.C.4
Caler, E.5
Levin, M.J.6
Baltz, T.7
El-Sayed, N.M.8
-
23
-
-
33846528971
-
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
-
Carlton J.M., Hirt R.P., Silva J.C., Delcher A.L., Schatz M., Zhao Q., Wortman J.R., Bidwell S.L., Alsmark U.C., Besteiro S., Sicheritz-Ponten T., Noel C.J., Dacks J.B., Foster P.G., Simillion C., Van de Peer Y., Miranda-Saavedra D., Barton G.J., Westrop G.D., Muller S., Dessi D., Fiori P.L., Ren Q., Paulsen I., Zhang H., Bastida-Corcuera F.D., Simoes-Barbosa A., Brown M.T., Hayes R.D., Mukherjee M., Okumura C.Y., Schneider R., Smith A.J., Vanacova S., Villalvazo M., Haas B.J., Pertea M., Feldblyum T.V., Utterback T.R., Shu C.L., Osoegawa K., de Jong P.J., Hrdy I., Horvathova L., Zubacova Z., Dolezal P., Malik S.B., Logsdon Jr. J.M., Henze K., Gupta A., Wang C.C., Dunne R.L., Upcroft J.A., Upcroft P., White O., Salzberg S.L., Tang P., Chiu C.H., Lee Y.S., Embley T.M., Coombs G.H., Mottram J.C., Tachezy J., Fraser-Liggett C.M., and Johnson P.J. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315 (2007) 207-212
-
(2007)
Science
, vol.315
, pp. 207-212
-
-
Carlton, J.M.1
Hirt, R.P.2
Silva, J.C.3
Delcher, A.L.4
Schatz, M.5
Zhao, Q.6
Wortman, J.R.7
Bidwell, S.L.8
Alsmark, U.C.9
Besteiro, S.10
Sicheritz-Ponten, T.11
Noel, C.J.12
Dacks, J.B.13
Foster, P.G.14
Simillion, C.15
Van de Peer, Y.16
Miranda-Saavedra, D.17
Barton, G.J.18
Westrop, G.D.19
Muller, S.20
Dessi, D.21
Fiori, P.L.22
Ren, Q.23
Paulsen, I.24
Zhang, H.25
Bastida-Corcuera, F.D.26
Simoes-Barbosa, A.27
Brown, M.T.28
Hayes, R.D.29
Mukherjee, M.30
Okumura, C.Y.31
Schneider, R.32
Smith, A.J.33
Vanacova, S.34
Villalvazo, M.35
Haas, B.J.36
Pertea, M.37
Feldblyum, T.V.38
Utterback, T.R.39
Shu, C.L.40
Osoegawa, K.41
de Jong, P.J.42
Hrdy, I.43
Horvathova, L.44
Zubacova, Z.45
Dolezal, P.46
Malik, S.B.47
Logsdon Jr., J.M.48
Henze, K.49
Gupta, A.50
Wang, C.C.51
Dunne, R.L.52
Upcroft, J.A.53
Upcroft, P.54
White, O.55
Salzberg, S.L.56
Tang, P.57
Chiu, C.H.58
Lee, Y.S.59
Embley, T.M.60
Coombs, G.H.61
Mottram, J.C.62
Tachezy, J.63
Fraser-Liggett, C.M.64
Johnson, P.J.65
more..
-
24
-
-
0142247085
-
Trans and cis splicing in trypanosomatids: mechanism, factors, and regulation
-
Liang X.H., Haritan A., Uliel S., and Michaeli S. Trans and cis splicing in trypanosomatids: mechanism, factors, and regulation. Eukaryot. Cell 2 (2003) 830-840
-
(2003)
Eukaryot. Cell
, vol.2
, pp. 830-840
-
-
Liang, X.H.1
Haritan, A.2
Uliel, S.3
Michaeli, S.4
-
25
-
-
0037090528
-
Life without transcriptional control? From fly to man and back again
-
Clayton C.E. Life without transcriptional control? From fly to man and back again. EMBO J. 21 (2002) 1881-1888
-
(2002)
EMBO J.
, vol.21
, pp. 1881-1888
-
-
Clayton, C.E.1
-
26
-
-
0038730932
-
Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region
-
Martinez-Calvillo S., Yan S., Nguyen D., Fox M., Stuart K., and Myler P.J. Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region. Mol. Cell. 11 (2003) 1291-1299
-
(2003)
Mol. Cell.
, vol.11
, pp. 1291-1299
-
-
Martinez-Calvillo, S.1
Yan, S.2
Nguyen, D.3
Fox, M.4
Stuart, K.5
Myler, P.J.6
-
27
-
-
6344234341
-
Transcription initiation and termination on Leishmania major chromosome 3
-
Martinez-Calvillo S., Nguyen D., Stuart K., and Myler P.J. Transcription initiation and termination on Leishmania major chromosome 3. Eukaryot. Cell 3 (2004) 506-517
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 506-517
-
-
Martinez-Calvillo, S.1
Nguyen, D.2
Stuart, K.3
Myler, P.J.4
-
28
-
-
34249862482
-
The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts
-
Heras S.R., Lopez M.C., Olivares M., and Thomas M.C. The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts. Nucleic Acids Res. 35 (2007) 2199-2214
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2199-2214
-
-
Heras, S.R.1
Lopez, M.C.2
Olivares, M.3
Thomas, M.C.4
-
29
-
-
34250179515
-
Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi
-
Obado S.O., Bot C., Nilsson D., Andersson B., and Kelly J.M. Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi. Genome Biol. 8 (2007) R37
-
(2007)
Genome Biol.
, vol.8
-
-
Obado, S.O.1
Bot, C.2
Nilsson, D.3
Andersson, B.4
Kelly, J.M.5
-
30
-
-
12744273368
-
Functional mapping of a trypanosome centromere by chromosome fragmentation identifies a 16-kb GC-rich transcriptional "strand-switch" domain as a major feature
-
Obado S.O., Taylor M.C., Wilkinson S.R., Bromley E.V., and Kelly J.M. Functional mapping of a trypanosome centromere by chromosome fragmentation identifies a 16-kb GC-rich transcriptional "strand-switch" domain as a major feature. Genome Res. 15 (2005) 36-43
-
(2005)
Genome Res.
, vol.15
, pp. 36-43
-
-
Obado, S.O.1
Taylor, M.C.2
Wilkinson, S.R.3
Bromley, E.V.4
Kelly, J.M.5
-
31
-
-
36549005184
-
Developmental regulation of gene expression in trypanosomatid parasitic protozoa, Curr. Opin
-
Haile S., and Papadopoulou B. Developmental regulation of gene expression in trypanosomatid parasitic protozoa, Curr. Opin. Microbiol. 10 (2007) 569-577
-
(2007)
Microbiol.
, vol.10
, pp. 569-577
-
-
Haile, S.1
Papadopoulou, B.2
-
32
-
-
0037205486
-
A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3′-untranslated region element
-
Boucher N., Wu Y., Dumas C., Dube M., Sereno D., Breton M., and Papadopoulou B. A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3′-untranslated region element. J. Biol. Chem. 277 (2002) 19511-19520
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 19511-19520
-
-
Boucher, N.1
Wu, Y.2
Dumas, C.3
Dube, M.4
Sereno, D.5
Breton, M.6
Papadopoulou, B.7
-
33
-
-
27444434267
-
Distinct 3′-untranslated region elements regulate stage-specific mRNA accumulation and translation in Leishmania
-
McNicoll F., Muller M., Cloutier S., Boilard N., Rochette A., Dube M., and Papadopoulou B. Distinct 3′-untranslated region elements regulate stage-specific mRNA accumulation and translation in Leishmania. J. Biol. Chem. 280 (2005) 35238-35246
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 35238-35246
-
-
McNicoll, F.1
Muller, M.2
Cloutier, S.3
Boilard, N.4
Rochette, A.5
Dube, M.6
Papadopoulou, B.7
-
34
-
-
22244472295
-
Comparative genomics of trypanosomatid parasitic protozoa
-
El-Sayed N.M., Myler P.J., Bartholomeu D.C., Nilsson D., Aggarwal G., Tran A.N., Ghedin E., Worthey E.A., Delcher A.L., Blandin G., Westenberger S.J., Caler E., Cerqueira G.C., Branche C., Haas B., Anupama A., Arner E., Aslund L., Attipoe P., Bontempi E., Bringaud F., Burton P., Cadag E., Campbell D.A., Carrington M., Crabtree J., Darban H., da Silveira J.F., de Jong P., Edwards K., Englund P.T., Fazelina G., Feldblyum T., Ferella M., Frasch A.C., Gull K., Horn D., Hou L., Huang Y., Kindlund E., Klingbeil M., Kluge S., Koo H., Lacerda D., Levin M.J., Lorenzi H., Louie T., Machado C.R., McCulloch R., McKenna A., Mizuno Y., Mottram J.C., Nelson S., Ochaya S., Osoegawa K., Pai G., Parsons M., Pentony M., Pettersson U., Pop M., Ramirez J.L., Rinta J., Robertson L., Salzberg S.L., Sanchez D.O., Seyler A., Sharma R., Shetty J., Simpson A.J., Sisk E., Tammi M.T., Tarleton R., Teixeira S., Van Aken S., Vogt C., Ward P.N., Wickstead B., Wortman J., White O., Fraser C.M., Stuart K.D., and Andersson B. Comparative genomics of trypanosomatid parasitic protozoa. Science 309 (2005) 404-409
-
(2005)
Science
, vol.309
, pp. 404-409
-
-
El-Sayed, N.M.1
Myler, P.J.2
Bartholomeu, D.C.3
Nilsson, D.4
Aggarwal, G.5
Tran, A.N.6
Ghedin, E.7
Worthey, E.A.8
Delcher, A.L.9
Blandin, G.10
Westenberger, S.J.11
Caler, E.12
Cerqueira, G.C.13
Branche, C.14
Haas, B.15
Anupama, A.16
Arner, E.17
Aslund, L.18
Attipoe, P.19
Bontempi, E.20
Bringaud, F.21
Burton, P.22
Cadag, E.23
Campbell, D.A.24
Carrington, M.25
Crabtree, J.26
Darban, H.27
da Silveira, J.F.28
de Jong, P.29
Edwards, K.30
Englund, P.T.31
Fazelina, G.32
Feldblyum, T.33
Ferella, M.34
Frasch, A.C.35
Gull, K.36
Horn, D.37
Hou, L.38
Huang, Y.39
Kindlund, E.40
Klingbeil, M.41
Kluge, S.42
Koo, H.43
Lacerda, D.44
Levin, M.J.45
Lorenzi, H.46
Louie, T.47
Machado, C.R.48
McCulloch, R.49
McKenna, A.50
Mizuno, Y.51
Mottram, J.C.52
Nelson, S.53
Ochaya, S.54
Osoegawa, K.55
Pai, G.56
Parsons, M.57
Pentony, M.58
Pettersson, U.59
Pop, M.60
Ramirez, J.L.61
Rinta, J.62
Robertson, L.63
Salzberg, S.L.64
Sanchez, D.O.65
Seyler, A.66
Sharma, R.67
Shetty, J.68
Simpson, A.J.69
Sisk, E.70
Tammi, M.T.71
Tarleton, R.72
Teixeira, S.73
Van Aken, S.74
Vogt, C.75
Ward, P.N.76
Wickstead, B.77
Wortman, J.78
White, O.79
Fraser, C.M.80
Stuart, K.D.81
Andersson, B.82
more..
-
35
-
-
0028298732
-
A short interspersed repetitive element provides a new 3′ acceptor site for trans-splicing in certain ribosomal P2 beta protein genes of Trypanosoma cruzi
-
Vazquez M.P., Schijman A.G., and Levin M.J. A short interspersed repetitive element provides a new 3′ acceptor site for trans-splicing in certain ribosomal P2 beta protein genes of Trypanosoma cruzi. Mol. Biochem. Parasitol. 64 (1994) 327-336
-
(1994)
Mol. Biochem. Parasitol.
, vol.64
, pp. 327-336
-
-
Vazquez, M.P.1
Schijman, A.G.2
Levin, M.J.3
-
36
-
-
13444267356
-
Analysis of the highly efficient pre-mRNA processing region HX1 of Trypanosoma cruzi
-
Ben-Dov C.P., Levin M.J., and Vazquez M.P. Analysis of the highly efficient pre-mRNA processing region HX1 of Trypanosoma cruzi. Mol. Biochem. Parasitol. 140 (2005) 97-105
-
(2005)
Mol. Biochem. Parasitol.
, vol.140
, pp. 97-105
-
-
Ben-Dov, C.P.1
Levin, M.J.2
Vazquez, M.P.3
-
37
-
-
19244386014
-
Analysis of the distribution of SIRE in the nuclear genome of Trypanosoma cruzi
-
Vazquez M., Lorenzi H., Schijman A.G., Ben-Dov C., and Levin M.J. Analysis of the distribution of SIRE in the nuclear genome of Trypanosoma cruzi. Gene 239 (1999) 207-216
-
(1999)
Gene
, vol.239
, pp. 207-216
-
-
Vazquez, M.1
Lorenzi, H.2
Schijman, A.G.3
Ben-Dov, C.4
Levin, M.J.5
-
38
-
-
0032410928
-
Double-stranded RNA induces mRNA degradation in Trypanosoma brucei
-
Ngo H., Tschudi C., Gull K., and Ullu E. Double-stranded RNA induces mRNA degradation in Trypanosoma brucei. Proc. Natl. Acad. Sci. U.S.A. 95 (1998) 14687-14692
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 14687-14692
-
-
Ngo, H.1
Tschudi, C.2
Gull, K.3
Ullu, E.4
-
40
-
-
0035160923
-
RNA interference in Trypanosoma brucei: cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs
-
Djikeng A., Shi H., Tschudi C., and Ullu E. RNA interference in Trypanosoma brucei: cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs. RNA 7 (2001) 1522-1530
-
(2001)
RNA
, vol.7
, pp. 1522-1530
-
-
Djikeng, A.1
Shi, H.2
Tschudi, C.3
Ullu, E.4
-
41
-
-
0347418186
-
Tests of cytoplasmic RNA interference (RNAi) and construction of a tetracycline-inducible T7 promoter system in Trypanosoma cruzi
-
DaRocha W.D., Otsu K., Teixeira S.M., and Donelson J.E. Tests of cytoplasmic RNA interference (RNAi) and construction of a tetracycline-inducible T7 promoter system in Trypanosoma cruzi. Mol. Biochem. Parasitol. 133 (2004) 175-186
-
(2004)
Mol. Biochem. Parasitol.
, vol.133
, pp. 175-186
-
-
DaRocha, W.D.1
Otsu, K.2
Teixeira, S.M.3
Donelson, J.E.4
-
42
-
-
0037884861
-
Improvements in transfection efficiency and tests of RNA interference (RNAi) approaches in the protozoan parasite Leishmania
-
Robinson K.A., and Beverley S.M. Improvements in transfection efficiency and tests of RNA interference (RNAi) approaches in the protozoan parasite Leishmania. Mol. Biochem. Parasitol. 128 (2003) 217-228
-
(2003)
Mol. Biochem. Parasitol.
, vol.128
, pp. 217-228
-
-
Robinson, K.A.1
Beverley, S.M.2
|