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Volumn 12, Issue 9, 2004, Pages 406-411

Phylogenetic reconstruction and lateral gene transfer

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL COLONIZATION; BACTERIAL GENOME; BUCHNERA; CORRELATION ANALYSIS; ESCHERICHIA COLI; FRACTIONATION; GENE CONSTRUCT; GENE LOCATION; GENE SEQUENCE; GENE TRANSFER; GENETIC ANALYSIS; GENETIC CONSERVATION; GRAM NEGATIVE BACTERIUM; HAEMOPHILUS INFLUENZAE TYPE A; MOLECULAR EVOLUTION; MOLECULAR INTERACTION; MOLECULAR MECHANICS; MOLECULAR PHYLOGENY; NONHUMAN; ORTHOLOGY; PRIORITY JOURNAL; PROKARYOTE; PSEUDOMONAS AERUGINOSA; REVIEW; SALMONELLA TYPHIMURIUM; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; STATISTICAL SIGNIFICANCE; VIBRIO CHOLERAE; WOLBACHIA; XANTHOMONAS; XYLELLA FASTIDIOSA; YERSINIA;

EID: 4444353678     PISSN: 0966842X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tim.2004.07.002     Document Type: Article
Times cited : (97)

References (34)
  • 1
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • H. Ochman Lateral gene transfer and the nature of bacterial innovation Nature 405 2000 299 304
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1
  • 2
    • 0037306453 scopus 로고    scopus 로고
    • Ancient horizontal gene transfer
    • J.R. Brown Ancient horizontal gene transfer Nat. Rev. Genet. 4 2003 121 132
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 121-132
    • Brown, J.R.1
  • 3
    • 0034931273 scopus 로고    scopus 로고
    • The history of life
    • G.J. Olsen The history of life Nat. Genet. 28 2001 197 198
    • (2001) Nat. Genet. , vol.28 , pp. 197-198
    • Olsen, G.J.1
  • 4
    • 0037471694 scopus 로고    scopus 로고
    • How big is the iceberg of which organellar genes in nuclear genomes are but the tip?
    • W.F. Doolittle How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philos. Trans. R. Soc. Lond. B Biol. Sci. 358 2003 39 58
    • (2003) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.358 , pp. 39-58
    • Doolittle, W.F.1
  • 5
    • 0037168538 scopus 로고    scopus 로고
    • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    • R.A. Welch Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli Proc. Natl. Acad. Sci. U. S. A. 99 2002 17020 17024
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 17020-17024
    • Welch, R.A.1
  • 6
    • 0242354974 scopus 로고    scopus 로고
    • Horizontal gene transfer and phylogenetics
    • H. Philippe, and C.J. Douady Horizontal gene transfer and phylogenetics Curr. Opin. Microbiol. 6 2003 498 505
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 498-505
    • Philippe, H.1    Douady, C.J.2
  • 7
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: The case of the gamma proteobacteria
    • E. Lerat From gene trees to organismal phylogeny in prokaryotes: the case of the gamma proteobacteria PLoS Biol. 1 2003 E19
    • (2003) PLoS Biol. , vol.1
    • Lerat, E.1
  • 8
    • 0036137155 scopus 로고    scopus 로고
    • Eubacterial phylogeny based on translational apparatus proteins
    • C. Brochier Eubacterial phylogeny based on translational apparatus proteins Trends Genet. 18 2002 1 5
    • (2002) Trends Genet. , vol.18 , pp. 1-5
    • Brochier, C.1
  • 9
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • S.L. Baldauf A kingdom-level phylogeny of eukaryotes based on combined protein data Science 290 2000 972 977
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1
  • 10
    • 0036098562 scopus 로고    scopus 로고
    • Archaeal phylogeny based on ribosomal proteins
    • O. Matte-Tailliez Archaeal phylogeny based on ribosomal proteins Mol. Biol. Evol. 19 2002 631 639
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 631-639
    • Matte-Tailliez, O.1
  • 11
    • 0036061865 scopus 로고    scopus 로고
    • A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
    • V. Daubin A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history Genome Res. 12 2002 1080 1090
    • (2002) Genome Res. , vol.12 , pp. 1080-1090
    • Daubin, V.1
  • 12
    • 0042027842 scopus 로고    scopus 로고
    • Phylogenetics and the cohesion of bacterial genomes
    • V. Daubin Phylogenetics and the cohesion of bacterial genomes Science 301 2003 829 832
    • (2003) Science , vol.301 , pp. 829-832
    • Daubin, V.1
  • 13
    • 0035749071 scopus 로고    scopus 로고
    • Bacterial molecular phylogeny using supertree approach
    • V. Daubin Bacterial molecular phylogeny using supertree approach Genome Inform. Ser. Workshop Genome Inform. 12 2001 155 164
    • (2001) Genome Inform. Ser. Workshop Genome Inform. , vol.12 , pp. 155-164
    • Daubin, V.1
  • 14
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • B. Snel Genome phylogeny based on gene content Nat. Genet. 21 1999 108 110
    • (1999) Nat. Genet. , vol.21 , pp. 108-110
    • Snel, B.1
  • 15
    • 0032778047 scopus 로고    scopus 로고
    • The genomic tree as revealed from whole proteome comparisons
    • F. Tekaia The genomic tree as revealed from whole proteome comparisons Genome Res. 9 1999 550 557
    • (1999) Genome Res. , vol.9 , pp. 550-557
    • Tekaia, F.1
  • 16
    • 0036499057 scopus 로고    scopus 로고
    • SHOT: A web server for the construction of genome phylogenies
    • J.O. Korbel SHOT: a web server for the construction of genome phylogenies Trends Genet. 18 2002 158 162
    • (2002) Trends Genet. , vol.18 , pp. 158-162
    • Korbel, J.O.1
  • 17
    • 0037022379 scopus 로고    scopus 로고
    • The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
    • E. Bapteste The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba Proc. Natl. Acad. Sci. U. S. A. 99 2002 1414 1419
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 1414-1419
    • Bapteste, E.1
  • 18
    • 0037352585 scopus 로고    scopus 로고
    • The genetic core of the universal ancestor
    • J.K. Harris The genetic core of the universal ancestor Genome Res. 13 2003 407 412
    • (2003) Genome Res. , vol.13 , pp. 407-412
    • Harris, J.K.1
  • 19
    • 0036593395 scopus 로고    scopus 로고
    • Ancient phylogenetic relationships
    • S. Gribaldo, and H. Philippe Ancient phylogenetic relationships Theor. Popul. Biol. 61 2002 391 408
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 391-408
    • Gribaldo, S.1    Philippe, H.2
  • 20
    • 0035793056 scopus 로고    scopus 로고
    • Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences
    • E.J. Feil Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences Proc. Natl. Acad. Sci. U. S. A. 98 2001 182 187
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 182-187
    • Feil, E.J.1
  • 21
    • 0034831587 scopus 로고    scopus 로고
    • Defining the core of nontransferable prokaryotic genes: The euryarchaeal core
    • C.L. Nesbo Defining the core of nontransferable prokaryotic genes: the euryarchaeal core J. Mol. Evol. 53 2001 340 350
    • (2001) J. Mol. Evol. , vol.53 , pp. 340-350
    • Nesbo, C.L.1
  • 22
    • 2242447089 scopus 로고    scopus 로고
    • Whole-genome analysis of photosynthetic prokaryotes
    • J. Raymond Whole-genome analysis of photosynthetic prokaryotes Science 298 2002 1616 1620
    • (2002) Science , vol.298 , pp. 1616-1620
    • Raymond, J.1
  • 23
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • H. Shimodaira, and M. Hasegawa Multiple comparisons of log-likelihoods with applications to phylogenetic inference Mol. Biol. Evol. 16 1999 1114 1116
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 24
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • H. Shimodaira, and M. Hasegawa CONSEL: for assessing the confidence of phylogenetic tree selection Bioinformatics 17 2001 1246 1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 25
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • H. Shimodaira An approximately unbiased test of phylogenetic tree selection Syst. Biol. 51 2002 492 508
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 26
    • 0034942865 scopus 로고    scopus 로고
    • Universal trees based on large combined protein sequence data sets
    • J.R. Brown Universal trees based on large combined protein sequence data sets Nat. Genet. 28 2001 281 285
    • (2001) Nat. Genet. , vol.28 , pp. 281-285
    • Brown, J.R.1
  • 28
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • R. Jain Horizontal gene transfer among genomes: the complexity hypothesis Proc. Natl. Acad. Sci. U. S. A. 96 1999 3801 3806
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 3801-3806
    • Jain, R.1
  • 30
    • 0027738868 scopus 로고
    • Horizontal transfer of ATPase genes-the tree of life becomes a net of life
    • E. Hilario, and J.P. Gogarten Horizontal transfer of ATPase genes-the tree of life becomes a net of life Biosystems 31 1993 111 119
    • (1993) Biosystems , vol.31 , pp. 111-119
    • Hilario, E.1    Gogarten, J.P.2
  • 31
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • W.F. Doolittle Phylogenetic classification and the universal tree Science 284 1999 2124 2129
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 34
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • H.A. Schmidt TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing Bioinformatics 18 2002 502 504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.