Monoallelic expression of multiple genes in the CNS

PLoS ONE

Volumn 2, Issue 12, 2007, Pages

  Wang, Jinhui ^a   Valo, Zuzana ^a   Smith, David ^a   Singer Sam, Judith ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; DNA; PROTEIN AGC1; PROTEIN OLFR; PROTEIN P4HA3; PROTEIN S14; PROTEIN THRSP;

ALLELE; ANIMAL CELL; ARTICLE; CENTRAL NERVOUS SYSTEM; CHROMOSOME 7; CONTROLLED STUDY; DNA METHYLATION; DNA SEQUENCE; GENE CLUSTER; GENE EXPRESSION; GENE IDENTIFICATION; GENE LOCATION; HIPPOCAMPUS; MICROARRAY ANALYSIS; MOLECULAR PROBE; MOUSE; NEURAL STEM CELL; NONHUMAN; ORGANISM HYBRIDIZATION; SEQUENCE ANALYSIS; ANIMAL; C57BL MOUSE; DNA MICROARRAY; HUMAN; MALE; METABOLISM;

MUS;

ALLELES; ANIMALS; CENTRAL NERVOUS SYSTEM; GENE EXPRESSION; HUMANS; MALE; MICE; MICE, INBRED C57BL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 44149086383     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0001293     Document Type: Article

References (43)

1. Torrey EF, Bowler AE, Taylor EH, Gottesman II (1994) Schizophrenia and Manic-Depressive Disorder. New York: HarperCollins. pp 274.
2. Malissen M, Trucy J, Jouvin-Marche E, Cazenave PA, Scollay R, et al. (1992) Regulation of TCR α and β gene allelic exclusion during T-cell development. Immunol Today 13: 315-322.
3. Rimm IJ, Bloch DB, Seidman JG (1989) Allelic exclusion and lymphocyte development. Lessons from transgenic mice. Mol Biol Med 6: 355-364.
4. Held W, Raulet DH (1997) Expression of the Ly49A gene in murine natural killer cell clones is predominantly but not exclusively mono-allelic. Eur J Immunol 27: 2876-2884.
5. Holländer GA, Zuklys S, Morel C, Mizoguchi E, Mobisson K, et al. (1998) Monoallelic expression of the interleukin-2 locus. Science 279: 2118-2121.
6. Bix M, Locksley RM (1998) Independent and epigenetic regulation of the interleukin-4 alleles in CD4+ T cells. Science 281: 1352-1354.
7. Rivière I, Sunshine MJ, Littman DR (1998) Regulation of IL-4 expression by activation of individual alleles. Immunity 9: 217-228.
8. Kelly BL, Locksley RM (2000) Coordinate regulation of the IL-4, IL-13, and IL-5 cytokine cluster in Th2 clones revealed by allelic expression patterns. J Immunol 165: 2982-2986.
9. Chess A, Simon I, Cedar H, Axel R (1994) Allelic inactivation regulates olfactory receptor gene expression. Cell 78: 823-834.
10. Rodriguez I, Feinstein P, Mombaerts P (1999) Variable patterns of axonal projections of sensory neurons in the mouse vomeronasal system. Cell 97: 199-208.
11. Nutt SL, Vambrie S, Steinlein P, Kozmik Z, Rolink A, et al. (1999) Independent regulation of the two Pax5 alleles during B-cell development. Nat Genet 21: 390-395.
12. Sano Y, Shimada T, Nakashima H, Nicholson RH, Eliason JF, et al. (2001) Random monoallelic expression of three genes clustered within 60 kb of mouse t complex genomic DNA. Genome Res 11: 1833-1841.
13. Gimelbrant AA, Ensminger AW, Qi P, Zucker J, Chess A (2005) Monoallelic expression and asynchronous replication of p120 catenin in mouse and human cells. J Biol Chem 280: 1354-1359.
14. Mann JR, Szabo PE, Reed MR, Singer-Sam J (2000) Methylated DNA sequences in genomic imprinting. Crit Rev Eukaryot Gene Expression 10: 241-257.
15. Goldmit M, Bergman Y (2004) Monoallelic gene expression: a repertoire of recurrent themes. Immunol Rev 200: 197-214.
16. Shen SI, Gao C, Singer-Sam J (1998) Use of a reverse transcriptase-polymerase chain reaction assay to analyze allele-specific expression in individual hippocampal neurons. Mol Genet Metab 63: 96-102.
17. Rhoades KL, Singh N, Simon I, Glidden B, Cedar H, et al. (2000) Allele-specific expression patterns of interleukin-2 and Pax-5 revealed by a sensitive single-cell RT-PCR analysis. Curr Biol 10: 789-792.
18. Strichman-Almashanu LZ, Lee RS, Onyango PO, Perlman E, Flam F, et al. (2002) A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes. Genome Res 12: 543-554.
19. Yamada Y, Watanabe H, Miura F, Soejima H, Uchiyama M, et al. (2004) A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q. Genome Res 14: 247-266.
20. Khulan B, Thompson RF, Ye K, Fazzari MJ, Suzuki M, et al. (2006) Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Res 16: 1046-1055.
21. Pfister S, Schlaeger C, Mendrzyk F, Wittmann A, Benner A, et al. (2007) Array-based profiling of reference-independent methylation status (aPRIMES) identifies frequent promoter methylation and consecutive downregulation of ZIC2 in pediatric medulloblastoma. Nucleic Acids Res 35: e51.
22. Schumacher A, Kapranov P, Kaminsky Z, Flanagan J, Assadzadeh A, et al. (2006) Microarray-based DNA methylation profiling: technology and applications. Nucleic Acids Res 34: 528-542.
23. Nicholls RD, Knepper JL (2001) Genome organization, function, and imprinting in Prader-Willi and Angelman syndromes. Annu Rev Genomics Hum Genet 2: 153-175.
24. Gabriel JM, Gray TA, Stubbs L, Saitoh S, Ohta T, et al. (1998) Structure and function correlations at the imprinted mouse Snrpn locus. Mamm Genome 9: 788-793.
25. Godfrey PA, Malnic B, Buck LB (2004) The mouse olfactory receptor gene family. Proc Natl Acad Sci U S A 101: 2156-2161.
26. Malnic B, Godfrey PA, Buck LB (2004) The human olfactory receptor gene family. Proc Natl Acad Sci U S A 101: 2584-2589.
27. Grillasca JP, Gastaldi M, Khiri H, Dace A, Peyrol N, et al. (1997) Cloning and initial characterization of human and mouse Spot 14 genes. FEBS Lett 401: 38-42.
28. Rinchik EM, Bultman SJ, Horsthemke B, Lee ST, Strunk KM, et al. (1993) A gene for the mouse pink-eyed dilution locus and for human type II oculocutaneous albinism. Nature 361: 72-76.
29. Hanel ML, Wevrick R (2001) Establishment and maintenance of DNA methylation patterns in mouse Ndn: implications for maintenance of imprinting in target genes of the imprinting center. Mol Cell Biol 21: 2384-2392.
30. Chai JH, Locke DP, Ohta T, Greally JM, Nicholls RD (2001) Retrotransposed genes such as Frat3 in the mouse Chromosome 7C Prader-Willi syndrome region acquire the imprinted status of their insertion site. Mamm Genome 12: 813-821.
31. Gimelbrant AA, Chess A (2006) An epigenetic state associated with areas of gene duplication. Genome Res 16: 723-729.
32. Pham NV, Nguyen MT, Hu JF, Vu TH, Hoffman AR (1998) Dissociation of IGF2 and H19 imprinting in human brain. Brain Res 810: 1-8.
33. Albrecht U, Sutcliffe JS, Cattanach BM, Beechey CV, Armstrong D, et al. (1997) Imprinted expression of the murine Angelman syndrome gene, Ube3a, in hippocampal and Purkinje neurons. Nat Genet 17: 75-78.
34. Singh N, Ebrahimi FA, Gimelbrant AA, Ensminger AW, Tackett MR, et al. (2003) Coordination of the random asynchronous replication of autosomal loci. Nat Genet 33: 339-341.
35. Glusman G, Sosinsky A, Ben-Asher E, Avidan N, Sonkin D, et al. (2000) Sequence, structure, and evolution of a complete human olfactory receptor gene cluster. Genomics 63: 227-245.
36. Allen E, Horvath S, Tong F, Kraft P, Spiteri E, et al. (2003) High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes. Proc Natl Acad Sci U S A 100: 9940-9945.
37. Rodin SN, Riggs AD (2003) Epigenetic silencing may aid evolution by gene duplication. J Mol Evol 56: 718-729.
38. Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
39. Rittenhouse E, Dunn LC, Cookingham J, Calo C, Spiegelman M, et al. (1978) Cartilage matrix deficiency (cmd): a new autosomal recessive lethal mutation in the mouse. Journal of Embryology & Experimental Morphology 43: 71-84.
40. Moncur JT, Park JP, Memoli VA, Mohandas TK, Kinlaw WB (1998) The "Spot 14" gene resides on the telomeric end of the 11q13 amplicon and is expressed in lipogenic breast cancers: implications for control of tumor metabolism. Proc Natl Acad Sci U S A 95: 6989-6994.
41. Van Den Diepstraten C, Papay K, Bolender Z, Brown A, Pickering JG (2003) Cloning of a novel prolyl 4-hydroxylase subunit expressed in the fibrous cap of human atherosclerotic plaque. Circulation 108: 508-511.
42. Consortium MGS (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
43. Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, et al. (2004) The UCSC Table Browser data retrieval tool. Nucleic Acids Res 32: D493-496.