-
1
-
-
0033808265
-
Common methylation characteristics of sex chromosomes in somatic and germ cells from mouse, lemur and human
-
Bernardino, J., Lombard, M., Niveleau, A., and Dutrillaux, B. 2000. Common methylation characteristics of sex chromosomes in somatic and germ cells from mouse, lemur and human. Chromosome Res. 8: 513-525.
-
(2000)
Chromosome Res.
, vol.8
, pp. 513-525
-
-
Bernardino, J.1
Lombard, M.2
Niveleau, A.3
Dutrillaux, B.4
-
2
-
-
0021192752
-
Differentiation of two mouse cell lines is associated with hypomethylation of their genomes
-
Bestor, T.H., Hellewell, S.B., and Ingram, V.M. 1984. Differentiation of two mouse cell lines is associated with hypomethylation of their genomes. Mol. Cell. Biol. 4: 1800-1806.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 1800-1806
-
-
Bestor, T.H.1
Hellewell, S.B.2
Ingram, V.M.3
-
3
-
-
0019322245
-
DNA methylation and the frequency of CpG in animal DNA
-
Bird, A.P. 1980. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res. 8: 1499-1504.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 1499-1504
-
-
Bird, A.P.1
-
4
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
_. 1986. CpG-rich islands and the function of DNA methylation. Nature 321: 209-213.
-
(1986)
Nature
, vol.321
, pp. 209-213
-
-
-
5
-
-
0037970043
-
Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes
-
Chen, C.M., Chen, H.L., Hsiau, T.H., Hsiau, A.H., Shi, H., Brock, G.J., Wei, S.H., Caldwell, C.W., Yan, P.S., and Huang, T.H. 2003. Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes. Am. J. Pathol. 163: 37-45.
-
(2003)
Am. J. Pathol.
, vol.163
, pp. 37-45
-
-
Chen, C.M.1
Chen, H.L.2
Hsiau, T.H.3
Hsiau, A.H.4
Shi, H.5
Brock, G.J.6
Wei, S.H.7
Caldwell, C.W.8
Yan, P.S.9
Huang, T.H.10
-
6
-
-
20044362416
-
Epigenome analyses using BAC microarrays identify evolutionary conservation of tissue-specific methylation of SHANK3
-
Ching, T.T., Maunakea, A.K., Jun, P., Hong, C., Zardo, G., Pinkel, D., Albertson, D.G., Fridlyand, J., Mao, J.H., Shchors, K., et al. 2005. Epigenome analyses using BAC microarrays identify evolutionary conservation of tissue-specific methylation of SHANK3. Nat. Genet. 37: 645-651.
-
(2005)
Nat. Genet.
, vol.37
, pp. 645-651
-
-
Ching, T.T.1
Maunakea, A.K.2
Jun, P.3
Hong, C.4
Zardo, G.5
Pinkel, D.6
Albertson, D.G.7
Fridlyand, J.8
Mao, J.H.9
Shchors, K.10
-
7
-
-
0033562954
-
Acquisition of the H19 methylation imprint occurs differentially on the parental alleles during spermatogenesis
-
Davis, T.L., Trasler, J.M., Moss, S.B., Yang, G.J., and Bartolomei, M.S. 1999. Acquisition of the H19 methylation imprint occurs differentially on the parental alleles during spermatogenesis. Genomics 58: 18-28.
-
(1999)
Genomics
, vol.58
, pp. 18-28
-
-
Davis, T.L.1
Trasler, J.M.2
Moss, S.B.3
Yang, G.J.4
Bartolomei, M.S.5
-
8
-
-
4444346815
-
De novo quantitative bisulfite sequencing using the pyrosequencing technology
-
Dupont, J.M., Tost, J., Jammes, H., and Gut, I.G. 2004. De novo quantitative bisulfite sequencing using the pyrosequencing technology. Anal. Biochem. 333: 119-127.
-
(2004)
Anal. Biochem.
, vol.333
, pp. 119-127
-
-
Dupont, J.M.1
Tost, J.2
Jammes, H.3
Gut, I.G.4
-
10
-
-
23044514669
-
Epigenetic differences arise during the lifetime of monozygotic twins
-
Fraga, M.F., Ballestar, E., Paz, M.F., Ropero, S., Setien, F., Ballestar, M.L., Heine-Suner, D., Cigudosa, J.C., Urioste, M., Benitez, J., et al. 2005. Epigenetic differences arise during the lifetime of monozygotic twins. Proc. Natl. Acad. Sci. 102: 10604-10609.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 10604-10609
-
-
Fraga, M.F.1
Ballestar, E.2
Paz, M.F.3
Ropero, S.4
Setien, F.5
Ballestar, M.L.6
Heine-Suner, D.7
Cigudosa, J.C.8
Urioste, M.9
Benitez, J.10
-
11
-
-
18844465619
-
Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS)
-
Frigola, J., Ribas, M., Risques, R.A., and Peinado, M.A. 2002. Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS). Nucleic Acids Res. 30: e28.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Frigola, J.1
Ribas, M.2
Risques, R.A.3
Peinado, M.A.4
-
12
-
-
0023216891
-
CpG islands in vertebrate genomes
-
Gardiner-Garden, M. and Frommer, M. 1987. CpG islands in vertebrate genomes. J. Mol. Biol. 196: 261-282.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 261-282
-
-
Gardiner-Garden, M.1
Frommer, M.2
-
13
-
-
0037072943
-
A unique developmental pattern of Oct-3/4 DNA methylation is controlled by a cis-demodification element
-
Gidekel, S. and Bergman, Y. 2002. A unique developmental pattern of Oct-3/4 DNA methylation is controlled by a cis-demodification element. J. Biol. Chem. 277: 34521-34530.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34521-34530
-
-
Gidekel, S.1
Bergman, Y.2
-
14
-
-
33646870108
-
Genome-wide profiling of promoter methylation in human
-
Hatada, I., Fukasawa, M., Kimura, M., Morita, S., Yamada, K., Yoshikawa, T., Yamanaka, S., Endo, C., Sakurada, A., Sato, M., et al. 2006. Genome-wide profiling of promoter methylation in human. Oncogene 25: 3059-3064.
-
(2006)
Oncogene
, vol.25
, pp. 3059-3064
-
-
Hatada, I.1
Fukasawa, M.2
Kimura, M.3
Morita, S.4
Yamada, K.5
Yoshikawa, T.6
Yamanaka, S.7
Endo, C.8
Sakurada, A.9
Sato, M.10
-
15
-
-
23044499067
-
Distinct epigenetic changes in the stromal cells of breast cancers
-
Hu, M., Yao, J., Cai, L., Bachman, K.E., van den Brule, F., Velculescu, V., and Polyak, K. 2005. Distinct epigenetic changes in the stromal cells of breast cancers. Nat. Genet. 37: 899-905.
-
(2005)
Nat. Genet.
, vol.37
, pp. 899-905
-
-
Hu, M.1
Yao, J.2
Cai, L.3
Bachman, K.E.4
Van Den Brule, F.5
Velculescu, V.6
Polyak, K.7
-
16
-
-
0035878329
-
CpG island of rat sphingosine kinase-1 gene: Tissue-dependent DNA methylation status and multiple alternative first exons
-
Imamura, T., Ohgane, J., Ito, S., Ogawa, T., Hattori, N., Tanaka, S., and Shiota, K. 2001. CpG island of rat sphingosine kinase-1 gene: Tissue-dependent DNA methylation status and multiple alternative first exons. Genomics 76: 117-125.
-
(2001)
Genomics
, vol.76
, pp. 117-125
-
-
Imamura, T.1
Ohgane, J.2
Ito, S.3
Ogawa, T.4
Hattori, N.5
Tanaka, S.6
Shiota, K.7
-
17
-
-
0036274359
-
The fundamental role of epigenetic events in cancer
-
Jones, P.A. and Baylin, S.B. 2002. The fundamental role of epigenetic events in cancer. Nat. Rev. Genet. 3: 415-428.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 415-428
-
-
Jones, P.A.1
Baylin, S.B.2
-
18
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J., Sugnet, C.W., Furey, T.S., Roskin, K.M., Pringle, T.H., Zahler, A.M., and Haussler, D. 2002. The human genome browser at UCSC. Genome Res. 12: 996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
19
-
-
0035511649
-
Bisulfite genomic sequencing of microdissected cells
-
Kerjean, A., Vieillefond, A., Thiounn, N., Sibony, M., Jeanpierre, M., and Jouannet, P. 2001. Bisulfite genomic sequencing of microdissected cells. Nucleic Acids Res. 29: E106.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Kerjean, A.1
Vieillefond, A.2
Thiounn, N.3
Sibony, M.4
Jeanpierre, M.5
Jouannet, P.6
-
20
-
-
31744433660
-
Evidence for an instructive mechanism of de novo methylation in cancer cells
-
Keshet, I., Schlesinger, Y., Farkash, S., Rand, E., Hecht, M., Segal, E., Pikarski, E., Young, R.A., Niveleau, A., Cedar, H., et al. 2006. Evidence for an instructive mechanism of de novo methylation in cancer cells. Nat. Genet. 38: 149-153.
-
(2006)
Nat. Genet.
, vol.38
, pp. 149-153
-
-
Keshet, I.1
Schlesinger, Y.2
Farkash, S.3
Rand, E.4
Hecht, M.5
Segal, E.6
Pikarski, E.7
Young, R.A.8
Niveleau, A.9
Cedar, H.10
-
21
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
Kim, T.H., Barrera, L.O., Zheng, M., Qu, C., Singer, M.A., Richmond, T.A., Wu, Y., Green, R.D., and Ren, B. 2005. A high-resolution map of active promoters in the human genome. Nature 426: 876-880.
-
(2005)
Nature
, vol.426
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
Richmond, T.A.6
Wu, Y.7
Green, R.D.8
Ren, B.9
-
22
-
-
0038576158
-
The power and the promise of DNA methylation markers
-
Laird, P.W. 2003. The power and the promise of DNA methylation markers. Nat. Rev. Cancer 3: 253-266.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 253-266
-
-
Laird, P.W.1
-
23
-
-
0026742792
-
CpG islands as gene markers in the human genome
-
Larsen, F., Gundersen, G., Lopez, R., and Prydz, H. 1992. CpG islands as gene markers in the human genome. Genomics 13: 1095-1107.
-
(1992)
Genomics
, vol.13
, pp. 1095-1107
-
-
Larsen, F.1
Gundersen, G.2
Lopez, R.3
Prydz, H.4
-
24
-
-
0032542364
-
Genetic instabilities in human cancers
-
Lengauer, C., Kinzler, K.W., and Vogelstein, B. 1998. Genetic instabilities in human cancers. Nature 396: 643-649.
-
(1998)
Nature
, vol.396
, pp. 643-649
-
-
Lengauer, C.1
Kinzler, K.W.2
Vogelstein, B.3
-
25
-
-
23744484912
-
Profiling DNA methylation patterns using genomic tiling microarrays
-
Lippman, Z., Gendrel, A.V., Colot, V., and Martienssen, R. 2005. Profiling DNA methylation patterns using genomic tiling microarrays. Nat. Methods 2: 219-224.
-
(2005)
Nat. Methods
, vol.2
, pp. 219-224
-
-
Lippman, Z.1
Gendrel, A.V.2
Colot, V.3
Martienssen, R.4
-
26
-
-
0037238396
-
Beckwith-Wiedemann syndrome and assisted reproduction technology (ART)
-
Maher, E.R., Brueton, L.A., Bowdin, S.C., Luharia, A., Cooper, W., Cole, T.R., Macdonald, F., Sampson, J.R., Barratt, C.L., Reik, W., et al. 2003. Beckwith-Wiedemann syndrome and assisted reproduction technology (ART). J. Med. Genet. 40: 62-64.
-
(2003)
J. Med. Genet.
, vol.40
, pp. 62-64
-
-
Maher, E.R.1
Brueton, L.A.2
Bowdin, S.C.3
Luharia, A.4
Cooper, W.5
Cole, T.R.6
Macdonald, F.7
Sampson, J.R.8
Barratt, C.L.9
Reik, W.10
-
27
-
-
0043163750
-
Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: Applications of virtual image restriction landmark genomic scanning (Vi-RLGS)
-
Matsuyama, T., Kimura, M.T., Koike, K., Abe, T., Nakano, T., Asami, T., Ebisuzaki, T., Held, W.A., Yoshida, S., and Nagase, H. 2003. Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: Applications of virtual image restriction landmark genomic scanning (Vi-RLGS). Nucleic Acids Res. 31: 4490-4496.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4490-4496
-
-
Matsuyama, T.1
Kimura, M.T.2
Koike, K.3
Abe, T.4
Nakano, T.5
Asami, T.6
Ebisuzaki, T.7
Held, W.A.8
Yoshida, S.9
Nagase, H.10
-
28
-
-
0034764307
-
SSAHA: A fast search method for large DNA databases
-
Ning, Z., Cox, A.J., and Mullikin, J.C. 2001. SSAHA: A fast search method for large DNA databases. Genome Res. 11: 1725-1729.
-
(2001)
Genome Res.
, vol.11
, pp. 1725-1729
-
-
Ning, Z.1
Cox, A.J.2
Mullikin, J.C.3
-
29
-
-
0036852098
-
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
-
Nuwaysir, E.F., Huang, W., Albert, T.J., Singh, J., Nuwaysir, K., Pitas, A., Richmond, T., Gorski, T., Berg, J.P., Ballin, J., et al. 2002. Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res. 12: 1749-1755.
-
(2002)
Genome Res.
, vol.12
, pp. 1749-1755
-
-
Nuwaysir, E.F.1
Huang, W.2
Albert, T.J.3
Singh, J.4
Nuwaysir, K.5
Pitas, A.6
Richmond, T.7
Gorski, T.8
Berg, J.P.9
Ballin, J.10
-
30
-
-
0037373891
-
A systematic profile of DNA methylation in human cancer cell lines
-
Paz, M.F., Fraga, M.F., Avila, S., Guo, M., Pollan, M., Herman, J.G., and Esteller, M. 2003. A systematic profile of DNA methylation in human cancer cell lines. Cancer Res. 63: 1114-1121.
-
(2003)
Cancer Res.
, vol.63
, pp. 1114-1121
-
-
Paz, M.F.1
Fraga, M.F.2
Avila, S.3
Guo, M.4
Pollan, M.5
Herman, J.G.6
Esteller, M.7
-
31
-
-
0035183199
-
Determinants of CpG islands: Expression in early embryo and isochore structure
-
Ponger, L., Duret, L., and Mouchiroud, D. 2001. Determinants of CpG islands: Expression in early embryo and isochore structure. Genome Res. 11: 1854-1860.
-
(2001)
Genome Res.
, vol.11
, pp. 1854-1860
-
-
Ponger, L.1
Duret, L.2
Mouchiroud, D.3
-
32
-
-
32044455298
-
Large-scale structure of genomic methylation patterns
-
Rollins, R.A., Haghighi, F., Edwards, J.R., Das, R., Zhang, M.Q., Ju, J., and Bestor, T.H. 2006. Large-scale structure of genomic methylation patterns. Genome Res. 16: 157-163.
-
(2006)
Genome Res.
, vol.16
, pp. 157-163
-
-
Rollins, R.A.1
Haghighi, F.2
Edwards, J.R.3
Das, R.4
Zhang, M.Q.5
Ju, J.6
Bestor, T.H.7
-
33
-
-
0032873017
-
Identification of the gene-richest bands in human prometaphase chromosomes
-
Saccone, S., Federico, C., Solovei, I., Croquette, M.F., Della Valle, G., and Bernardi, G. 1999. Identification of the gene-richest bands in human prometaphase chromosomes. Chromosome Res. 7: 379-386.
-
(1999)
Chromosome Res.
, vol.7
, pp. 379-386
-
-
Saccone, S.1
Federico, C.2
Solovei, I.3
Croquette, M.F.4
Della Valle, G.5
Bernardi, G.6
-
34
-
-
32644448942
-
Microarray-based DNA methylation profiling: Technology and applications
-
Schumacher, A., Kapranov, P., Kaminsky, Z., Flanagan, J., Assadzadeh, A., Yau, P., Virtanen, C., Winegarden, N., Cheng, J., Gingeras, T., et al. 2006. Microarray-based DNA methylation profiling: Technology and applications. Nucleic Acids Res. 34: 528-542.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 528-542
-
-
Schumacher, A.1
Kapranov, P.2
Kaminsky, Z.3
Flanagan, J.4
Assadzadeh, A.5
Yau, P.6
Virtanen, C.7
Winegarden, N.8
Cheng, J.9
Gingeras, T.10
-
35
-
-
25844494223
-
Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH
-
Selzer, R.R., Richmond, T.A., Pofahl, N.J., Green, R.D., Eis, P.S., Nair, P., Brothman, A.R., and Stallings, R.L. 2005. Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH. Genes Chromosomes Cancer 44: 305-319.
-
(2005)
Genes Chromosomes Cancer
, vol.44
, pp. 305-319
-
-
Selzer, R.R.1
Richmond, T.A.2
Pofahl, N.J.3
Green, R.D.4
Eis, P.S.5
Nair, P.6
Brothman, A.R.7
Stallings, R.L.8
-
36
-
-
0036734599
-
Epigenetic marks by DNA methylation specific to stem, germ and somatic cells in mice
-
Shiota, K., Kogo, Y., Ohgane, J., Imamura, T., Urano, A., Nishino, K., Tanaka, S., and Hattori, N. 2002. Epigenetic marks by DNA methylation specific to stem, germ and somatic cells in mice. Genes Cells 7: 961-969.
-
(2002)
Genes Cells
, vol.7
, pp. 961-969
-
-
Shiota, K.1
Kogo, Y.2
Ohgane, J.3
Imamura, T.4
Urano, A.5
Nishino, K.6
Tanaka, S.7
Hattori, N.8
-
37
-
-
0018785482
-
Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II
-
Singer, J., Roberts-Ems, J., and Riggs, A.D. 1979. Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II. Science 203: 1019-1021.
-
(1979)
Science
, vol.203
, pp. 1019-1021
-
-
Singer, J.1
Roberts-Ems, J.2
Riggs, A.D.3
-
38
-
-
14744267496
-
Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression
-
Song, F., Smith, J.F., Kimura, M.T., Morrow, A.D., Matsuyama, T., Nagase, H., and Held, W.A. 2005. Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression. Proc. Natl. Acad. Sci. 102: 3336-3341.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 3336-3341
-
-
Song, F.1
Smith, J.F.2
Kimura, M.T.3
Morrow, A.D.4
Matsuyama, T.5
Nagase, H.6
Held, W.A.7
-
39
-
-
14644396228
-
Detection and interpretation of altered methylation patterns in cancer cells
-
Ushijima, T. 2005. Detection and interpretation of altered methylation patterns in cancer cells. Nat. Rev. Cancer 5: 223-231.
-
(2005)
Nat. Rev. Cancer
, vol.5
, pp. 223-231
-
-
Ushijima, T.1
-
40
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
Weber, M., Davies, J.J., Wittig, D., Oakeley, E.J., Haase, M., Lam, W.L., and Schubeler, D. 2005. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37: 853-862.
-
(2005)
Nat. Genet.
, vol.37
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
41
-
-
0031873353
-
Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice
-
Wolff, G.L., Kodell, R.L., Moore, S.R., and Cooney, C.A. 1998. Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice. FASEB J. 12: 949-957.
-
(1998)
FASEB J.
, vol.12
, pp. 949-957
-
-
Wolff, G.L.1
Kodell, R.L.2
Moore, S.R.3
Cooney, C.A.4
-
42
-
-
0036322489
-
Applications of CpG island microarrays for high-throughput analysis of DNA methylation
-
Yan, P.S., Chen, C.M., Shi, H., Rahmatpanah, F., Wei, S.H., and Huang, T.H. 2002. Applications of CpG island microarrays for high-throughput analysis of DNA methylation. J. Nutr. 132: 2430S-2434S.
-
(2002)
J. Nutr.
, vol.132
-
-
Yan, P.S.1
Chen, C.M.2
Shi, H.3
Rahmatpanah, F.4
Wei, S.H.5
Huang, T.H.6
-
43
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder, J.A., Walsh, C.P., and Bestor, T.H. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13: 335-340.
-
(1997)
Trends Genet.
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
|