Agnostic particle tracking for three-dimensional motion of cellular granules and membrane-tethered bead dynamics

Biophysical Journal

Volumn 94, Issue 6, 2008, Pages 2374-2384

  Desai, Kalpit V ^a   Gary Bishop, T ^b   Vicci, Leandra ^b   O'Brien Sr , E Timothy ^c   Taylor II, Russell M ^b   Superfine, Richard ^c  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b Brooks Computer Science Building   (United States)

^c University of North Carolina at Chapel Hill   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; BIOPHYSICS; CALIBRATION; CELL MEMBRANE; CYTOLOGY; DIFFUSION; ELASTICITY; EQUIPMENT DESIGN; HUMAN; INSTRUMENTATION; KINETICS; LASER; MEMBRANE; METABOLISM; METHODOLOGY; MICROSCOPY; THREE DIMENSIONAL IMAGING;

ANIMALS; BIOPHYSICS; CALIBRATION; CELL MEMBRANE; CYTOLOGICAL TECHNIQUES; DIFFUSION; ELASTICITY; EQUIPMENT DESIGN; HUMANS; IMAGING, THREE-DIMENSIONAL; KINETICS; LASERS; MEMBRANES; MICROSCOPY, VIDEO; MODELS, BIOLOGICAL;

EID: 44049107497     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1529/biophysj.107.114140     Document Type: Article

References (65)

1. Crick, F. H. C., and A. F. W. Hughes. 1949. The physical properties of cytoplasm: a study by means of the magnetic particle method. Exp. Cell Res. Suppl. 1:37-80.
2. Yagi, K. 1961. The mechanical and colloidal properties of amoeba protoplasm and their relations to the mechanism of amoeboid movement. Comp. Biochem. Physiol. 3:73-80.
3. Abercrombie, M., J. E. M. Heaysman, and S. M. Pegrum. 1970. The locomotion of fibroblasts in culture: III. Movements of particles on the dorsal surface of the leading lamella. Exp. Cell Res. 62:389-398.
4. Barak, L. S., and W. W. Webb. 1982. Diffusion of low density lipoprotein-receptor complex on human fibroblasts. J. Cell Biol. 95: 846-852.
5. Geerts, H., M. de Brabander, and R. Nuydens. 1991. Nanovid microscopy. Nature. 351:765-766.
6. Schnapp, B. J., J. Gelles, and M. P. Sheetz. 1988. Nanometer-scale measurements using video light-microscopy. Cell Motil. Cytoskeleton. 10:47-53.
7. Fujiwara, T., K. Ritchie, H. Murakoshi, K. Jacobson, and A. Kusumi. 2002. Phospholipids undergo hop diffusion in compartmentalized cell membrane. J. Cell Biol. 157:1071-1082.
8. Murase, K., T. Fujiwara, Y. Umemura, K. Suzuki, R. Iino, H. Yamashita, M. Saito, H. Murakoshi, K. Ritchie, and A. Kusumi. 2004. Ultrafine membrane compartments for molecular diffusion as revealed by single molecule techniques. Biophys. J. 86:4075-4093.
9. Yildiz, A., J. N. Forkey, S. A. McKinney, T. Ha, Y. E. Goldman, and P. R. Selvin. 2003. Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science. 300:2061-2065.
10. Yildiz, A., and P. R. Selvin. 2005. Fluorescence imaging with one nanometer accuracy: application to molecular motors. Acc. Chem. Res. 38:574-582.
11. Speidel, M., A. Jon, and E. L. Florin. 2003. Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging. Opt. Lett. 28:69-71.
12. Carter, B. C., G. T. Shubeita, and S. P. Gross. 2005. Tracking single particles: a user-friendly quantitative evaluation. Phys. Biol. 2:60-72.
13. Kao, H. P., and A. S. Verkman. 1994. Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position. Biophys. J. 67:1291-1300.
14. Levi, V., Q. Q. Ruan, and E. Gratton. 2005. 3-D particle tracking in a two-photon microscope: application to the study of molecular dynamics in cells. Biophys. J. 88:2919-2928.
15. Ghislain, L. P., and W. W. Webb. 1993. Scanning-force microscope based on an optical trap. Opt. Lett. 18:1678-1680.
16. Lang, M. J., C. L. Asbury, J. W. Shaevitz, and S. M. Block. 2002. An automated two-dimensional optical force clamp for single molecule studies. Biophys. J. 83:491-501.
17. Rohrbach, A., and E. H. K. Stelzer. 2002. Three-dimensional position detection of optically trapped dielectric particles. J. Appl. Phys. 91:5474-5488.
18. Rohrbach, A., and E. H. K. Stelzer. 2002. Trapping forces, force constants, and potential depths for dielectric spheres in the presence of spherical aberrations. Appl. Opt. 41:2494-2507.
19. Rohrbach, A., H. Kress, and E. H. K. Stelzer. 2003. Three-dimensional tracking of small spheres in focused laser beams: influence of the detection angular aperture. Opt. Lett. 28:411-413.
20. Amblard, F., B. Yurke, A. Pargellis, and S. Leibler. 1996. A magnetic manipulator for studying local rheology and micromechanical properties of biological systems. Rev. Sci. Instrum. 67:818-827.
21. Assi, F., R. Jenks, J. Yang, C. Love, and M. Prentiss. 2002. Massively parallel adhesion and reactivity measurements using simple and inexpensive magnetic tweezers. J. Appl. Phys. 92:5584-5586.
22. Barbic, M., J. J. Mock, A. P. Gray, and S. Schultz. 2001. Scanning probe electromagnetic tweezers. Appl. Phys. Lett. 79:1897-1899.
23. Fisher, J. K., J. Cribb, K. V. Desai, L. Vicci, B. Wilde, K. Keller, R. M. Taylor, J. Haase, K. Bloom, E. T. O'Brien, and R. Superfine. 2006. Thin-foil magnetic force system for high-numerical-aperture microscopy. Rev. Sci. Instrum. 77:023702.
24. Gosse, C., and V. Croquette. 2002. Magnetic tweezers: micromanipulation and force measurement at the molecular level. Biophys. J. 82: 3314-3329.
25. Haber, C., and D. Wirtz. 2000. Magnetic tweezers for DNA micromanipulation. Rev. Sci. Instrum. 71:4561-4570.
26. Huang, H., C. Y. Dong, H. S. Kwon, J. D. Sutin, R. D. Kamm, and P. T. So. 2002. Three-dimensional cellular deformation analysis with a two-photon magnetic manipulator workstation. Biophys. J. 82:2211-2223.
27. Strick, T. R., J. F. Allemand, D. Bensimon, A. Bensimon, and V. Croquette. 1996. The elasticity of a single supercoiled DNA molecule. Science. 271:1835-1837.
28. Valberg, P. A., and D. F. Albertini. 1985. Cytoplasmic motions, rheology, and structure probed by a novel magnetic particle method. J. Cell Biol. 101:130-140.
29. Ziemann, F., J. Radler, and E. Sackmann. 1994. Local measurements of viscoelastic moduli of entangled actin networks using an oscillating magnetic bead micro-rheometer. Biophys. J. 66:2210-2216.
30. Liu, Y., D. K. Cheng, G. J. Sonek, M. W. Berns, C. F. Chapman, and B. J. Tromberg. 1995. Evidence for localized cell heating induced by infrared optical tweezers. Biophys. J. 68:2137-2144.
31. Peterman, E. J. G., F. Gittes, and C. F. Schmidt. 2003. Laser-induced heating in optical traps. Biophys. J. 84:1308-1316.
32. Schonle, A., and S. W. Hell. 1998. Heating by absorption in the focus of an objective lens. Opt. Lett. 23:325-327.
33. Vermeulen, K. C., J. van Mameren, G. J. M. Stienen, E. J. G. Peterman, G. J. L. Wuite, and C. F. Schmidt. 2006. Calibrating bead displacements in optical tweezers using acousto-optic deflectors. Rev. Sci. Instrum. 77:013704-013706.
34. Kleinbaum, D. G., L. L. Kupper, and K. E. Muller. 1988. Applied Regression Analysis and Other Multivariable Methods, 2nd ed. PWS-Kent Pub, Boston, MA. 228-250.
35. Born, M., and E. Wolf. 1980. Principles of Optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light, 6th. ed. Pergamon Press, Oxford.
36. Pralle, A., M. Prummer, E. L. Florin, E. H. Stelzer, and J. K. Horber. 1999. Three-dimensional high-resolution particle tracking for optical tweezers by forward scattered light. Microsc. Res. Tech. 44:378-386.
37. Feitosa, M. I. M., and O. N. Mesquita. 1991. Wall-drag effect on diffusion of colloidal particles near surfaces: a photon correlation study. Phys. Rev. A. 44:6677.
38. Saxton, M. J., and K. Jacobson. 1997. Single-particle tracking: applications to membrane dynamics. Annu. Rev. Biophys. Biomol. Struct. 26:373-399.
39. Mason, T. G., K. Ganesan, J. H. van Zanten, D. Wirtz, and S. C. Kuo. 1997. Particle tracking microrheology of complex fluids. Phys. Rev. Lett. 79:3282-3285.
40. Mathlouthi, M., and J. Génotelle. 1995. Rheological Properties of Sucrose Solutions and Suspensions. Blackie Academic & Professional, London.
41. Caspi, A., R. Granek, and M. Elbaum. 2002. Diffusion and directed motion in cellular transport. Phys. Rev. E. 66:011916.
42. Ragsdale, G. K., J. Phelps, and K. Luby-Phelps. 1997. Viscoelastic response of fibroblasts to tension transmitted through adherens junctions. Biophys. J. 73:2798-2808.
43. Tseng, Y., T. P. Kole, and D. Wirtz. 2002. Micromechanical mapping of live cells by multiple-particle-tracking microrheology. Biophys. J. 83:3162-3176.
44. Nan, X., P. A. Sims, P. Chen, and X. S. Xie. 2005. Observation of individual microtubule motor steps in living cells with endocytosed quantum dots. J. Phys. Chem. B. 109:24220-24224.
45. Daniels, B. R., B. C. Masi, and D. Wirtz. 2006. Probing single-cell micromechanics in vivo: the microrheology of C. elegans developing embryos. Biophys. J. 90:4712-4719.
46. Yamada, S., D. Wirtz, and S. C. Kuo. 2000. Mechanics of living cells measured by laser tracking microrheology. Biophys. J. 78:1736-1747.
47. Tolic-Norrelykke, I. M., E.-L. Munteanu, G. Thon, L. Oddershede, and K. Berg-Sorensen. 2004. Anomalous diffusion in living yeast cells. Phys. Rev. Lett. 93:078102-078104.
48. Golding, I., and E. C. Cox. 2006. Physical nature of bacterial cytoplasm. Phys. Rev. Lett. 96:098102-098104.
49. Wolfgang, F., W. Monika, and S. Erich. 2001. Dictyostelium cells' cytoplasm as an active viscoplastic body. Eur. Biophys. J. V30:284-294.
50. Wilhelm, C., F. Gazeau, and J. C. Bacri. 2003. Rotational magnetic endosome microrheology: viscoelastic architecture inside living cells. Phys. Rev. E. 67:061908-061912.
51. Gittes, F., and F. C. MacKintosh. 1998. Dynamic shear modulus of a semiflexible polymer network. Phys. Rev. E. 58:R1241.
52. Morse, D. C. 1998. Viscoelasticity of tightly entangled solutions of semiflexible polymers. Phys. Rev. E. 58:R1237.
53. Erwin, F. 2002. Physics in cell biology: on the physics of biopolymers and molecular motors. ChemPhysChem. 3:270-275.
54. Doi, M., and S. F. Edwards. 1986. The Theory of Polymer Dynamics. Oxford University Press, New York.
55. Schnurr, B., F. Gittes, F. C. MacKintosh, and C. F. Schmidt. 1997. Determining microscopic viscoelasticity in flexible and semiflexible polymer networks from thermal fluctuations. Macromolecules. 30:7781-7792.
56. Janmey, P. A., U. Euteneuer, P. Traub, and M. Schliwa. 1991. Viscoelastic properties of vimentin compared with other filamentous biopolymer networks. J. Cell Biol. 113:155-160.
57. Leterrier, J. F., J. Kas, J. Hartwig, R. Vegners, and P. A. Janmey. 1996. Mechanical effects of neurofilament cross-bridges. Modulation by phosphorylation, lipids, and interactions with f-actin. J. Biol. Chem. 271:15687-15694.
58. Ma, L., J. Xu, P. A. Coulombe, and D. Wirtz. 1999. Keratin filament suspensions show unique micromechanical properties. J. Biol. Chem. 274:19145-19151.
59. Coulombe, P. A., O. Bousquet, L. Ma, S. Yamada, and D. Wirtz. 2000. The 'ins' and 'outs' of intermediate filament organization. Trends Cell Biol. 10:420-428.
60. Mucke, N., L. Kreplak, R. Kirmse, T. Wedig, H. Herrmann, U. Aebi, and J. Langowski. 2004. Assessing the flexibility of intermediate filaments by atomic force microscopy. J. Mol. Biol. 335:1241-1250.
61. Kusumi, A., Y. Sako, and M. Yamamoto. 1993. Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells. Biophys. J. 65:2021-2040.
62. Kusumi, A., and Y. Sako. 1996. Cell surface organization by the membrane skeleton. Curr. Opin. Cell Biol. 8:566-574.
63. Edidin, M., S. C. Kuo, and M. P. Sheetz. 1991. Lateral movements of membrane glycoproteins restricted by dynamic cytoplasmic barriers. Science. 254:1379-1382.
64. Chen, Y., W. R. Thelin, B. Yang, S. L. Milgram, and K. Jacobson. 2006. Transient Anchorage of Cross-Linked Glycosyl-Phosphatidylinositol-Anchored Proteins Depends on Cholesterol, Src Family Kinases, Caveolin, and Phosphoinositides. Rockefeller University Press, New York. 169.
65. Weisberg, S. 1985. Applied Linear Regression. Wiley, New York.