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Volumn 32, Issue 15, 2004, Pages 4657-4664

Design and synthesis of fluorescent substrates for human tyrosyl-DNA phosphodiesterase I

Author keywords

[No Author keywords available]

Indexed keywords

ANTINEOPLASTIC AGENT; DOUBLE STRANDED DNA; HYMECROMONE; NEW DRUG; NUCLEOTIDE; OLIGONUCLEOTIDE; PHOSPHATE; PHOSPHODIESTERASE; PHOSPHODIESTERASE INHIBITOR; PHOSPHOTYROSINE; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; SINGLE STRANDED DNA; TYROSINE; TYROSYL DNA PHOSPHODIESTERASE I; UMBELLIFERONE DERIVATIVE; UNCLASSIFIED DRUG; VANADIC ACID; 4-METHYLUMBELLIFERONE; DRUG DERIVATIVE; FLUORESCENT DYE; TDP1 PROTEIN, HUMAN; TYROSYL DNA PHOSPHODIESTERASE; TYROSYL-DNA PHOSPHODIESTERASE;

EID: 4344587481     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh796     Document Type: Article
Times cited : (25)

References (31)
  • 1
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • Wang,J.C. (2002) Cellular roles of DNA topoisomerases: a molecular perspective. Nature Rev. Mol. Cell Biol., 3, 430-440.
    • (2002) Nature Rev. Mol. Cell Biol. , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 2
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • Champoux,J.J. (2001) DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem., 70, 369-413.
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 3
    • 0030698003 scopus 로고    scopus 로고
    • Trapping of mammalian topoisomerase I and recombinations induced by damaged DNA containing nicks or gaps. Importance of DNA end phosphorylation and camptothecin effects
    • Pourquier,P., Pilon,A.A., Kohlhagen,G., Mazumder,A., Sharma,A. and Pommier,Y. (1997) Trapping of mammalian topoisomerase I and recombinations induced by damaged DNA containing nicks or gaps. Importance of DNA end phosphorylation and camptothecin effects. J. Biol. Chem., 272, 26441-26447.
    • (1997) J. Biol. Chem. , vol.272 , pp. 26441-26447
    • Pourquier, P.1    Pilon, A.A.2    Kohlhagen, G.3    Mazumder, A.4    Sharma, A.5    Pommier, Y.6
  • 4
    • 0031003701 scopus 로고    scopus 로고
    • Effects of uracil incorporation, DNA mismatches, and abasic sites on cleavage and religation activities of mammalian topoisomerase I
    • Pourquier,P., Ueng,L.M., Kohlhagen,G., Mazumder,A., Gupta,M., Kohn,K.W. and Pommier,Y. (1997) Effects of uracil incorporation, DNA mismatches, and abasic sites on cleavage and religation activities of mammalian topoisomerase I. J. Biol. Chem., 272, 7792-7796.
    • (1997) J. Biol. Chem. , vol.272 , pp. 7792-7796
    • Pourquier, P.1    Ueng, L.M.2    Kohlhagen, G.3    Mazumder, A.4    Gupta, M.5    Kohn, K.W.6    Pommier, Y.7
  • 6
    • 0038485624 scopus 로고    scopus 로고
    • Structural impact of the leukemia drug 1-beta-D-arabinofuranosylcytosine (Ara-C) on the covalent human topoisomerase I-DNA complex
    • Chrencik,J.E., Burgin,A.B., Pommier,Y., Stewart,L. and Redinbo,M.R. (2003) Structural impact of the leukemia drug 1-beta-D-arabinofuranosylcytosine (Ara-C) on the covalent human topoisomerase I-DNA complex. J. Biol. Chem., 278, 12461-12466.
    • (2003) J. Biol. Chem. , vol.278 , pp. 12461-12466
    • Chrencik, J.E.1    Burgin, A.B.2    Pommier, Y.3    Stewart, L.4    Redinbo, M.R.5
  • 7
    • 0038207882 scopus 로고    scopus 로고
    • Non-camptothecin DNA topoisomerase I inhibitors in cancer therapy
    • Meng,L.H., Liao,Z.Y. and Pommier,Y. (2003) Non-camptothecin DNA topoisomerase I inhibitors in cancer therapy. Curr. Top. Med. Chem., 3, 305-320.
    • (2003) Curr. Top. Med. Chem. , vol.3 , pp. 305-320
    • Meng, L.H.1    Liao, Z.Y.2    Pommier, Y.3
  • 8
    • 0038167666 scopus 로고    scopus 로고
    • The camptothecins
    • Pizzolato,J.F. and Saltz,L.B. (2003) The camptothecins. Lancet, 361, 2235-2242.
    • (2003) Lancet , vol.361 , pp. 2235-2242
    • Pizzolato, J.F.1    Saltz, L.B.2
  • 9
    • 0033569666 scopus 로고    scopus 로고
    • Yeast gene for a Tyr-DNA phosphodiesterase that repairs topoisomerase I complexes
    • Pouliot,J.J., Yao,K.C., Robertson,C.A. and Nash,H.A. (1999) Yeast gene for a Tyr-DNA phosphodiesterase that repairs topoisomerase I complexes. Science, 286, 552-555.
    • (1999) Science , vol.286 , pp. 552-555
    • Pouliot, J.J.1    Yao, K.C.2    Robertson, C.A.3    Nash, H.A.4
  • 10
    • 0442298041 scopus 로고    scopus 로고
    • Engineered resistance to camptothecin and antifolates by retroviral coexpression of tyrosyl DNA phosphodiesterase-I and thymidylate synthase
    • Nivens,M.C., Felder,T., Galloway,A.H., Pena,M.M., Pouliot,J.J. and Spencer,H.T. (2004) Engineered resistance to camptothecin and antifolates by retroviral coexpression of tyrosyl DNA phosphodiesterase-I and thymidylate synthase. Cancer Chemother. Pharmacol., 53, 107-115.
    • (2004) Cancer Chemother. Pharmacol. , vol.53 , pp. 107-115
    • Nivens, M.C.1    Felder, T.2    Galloway, A.H.3    Pena, M.M.4    Pouliot, J.J.5    Spencer, H.T.6
  • 11
    • 0037069381 scopus 로고    scopus 로고
    • Repair of topoisomerase I covalent complexes in the absence of the tyrosyl-DNA phosphodiesterase Tdp1
    • Liu,C., Pouliot,J.J. and Nash,H.A. (2002) Repair of topoisomerase I covalent complexes in the absence of the tyrosyl-DNA phosphodiesterase Tdp1. Proc. Natl Acad. Sci. USA, 99, 14970-14975.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 14970-14975
    • Liu, C.1    Pouliot, J.J.2    Nash, H.A.3
  • 12
    • 0037108948 scopus 로고    scopus 로고
    • Yeast Tdp1 and Rad1-Rad10 function as redundant pathways for repairing Top1 replicative damage
    • Vance,J.R. and Wilson,T.E. (2002) Yeast Tdp1 and Rad1-Rad10 function as redundant pathways for repairing Top1 replicative damage. Proc. Natl Acad. Sci. USA, 99, 13669-13674.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13669-13674
    • Vance, J.R.1    Wilson, T.E.2
  • 13
    • 0023712476 scopus 로고
    • The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae
    • Weinert,T.A. and Hartwell,L.H. (1988) The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae. Science, 241, 317-322.
    • (1988) Science , vol.241 , pp. 317-322
    • Weinert, T.A.1    Hartwell, L.H.2
  • 14
    • 1242339593 scopus 로고    scopus 로고
    • Repair of DNA covalently linked to protein
    • Connelly,J.C. and Leach,D.R. (2004) Repair of DNA covalently linked to protein. Mol. Cell, 13, 307-316.
    • (2004) Mol. Cell , vol.13 , pp. 307-316
    • Connelly, J.C.1    Leach, D.R.2
  • 15
    • 0036178630 scopus 로고    scopus 로고
    • The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1
    • Davies,D.R., Interthal,H., Champoux,J.J. and Hol,W.G. (2002) The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1. Structure (Camb.), 10, 237-248.
    • (2002) Structure (Camb.) , vol.10 , pp. 237-248
    • Davies, D.R.1    Interthal, H.2    Champoux, J.J.3    Hol, W.G.4
  • 16
    • 0037073479 scopus 로고    scopus 로고
    • Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate and tungstate-inhibited structures
    • Davies,D.R., Interthal,H., Champoux,J.J. and Hol,W.G. (2002) Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate and tungstate-inhibited structures. J. Mol. Biol., 324, 917-932.
    • (2002) J. Mol. Biol. , vol.324 , pp. 917-932
    • Davies, D.R.1    Interthal, H.2    Champoux, J.J.3    Hol, W.G.4
  • 17
    • 0242515794 scopus 로고    scopus 로고
    • Crystal structure of a transition state mimic for tdp1 assembled from vanadate, DNA, and a topoisomerase I-derived peptide
    • Davies,D.R., Interthal,H., Champoux,J.J. and Hol,W.G. (2003) Crystal structure of a transition state mimic for tdp1 assembled from vanadate, DNA, and a topoisomerase I-derived peptide. Chem. Biol., 10, 139-147.
    • (2003) Chem. Biol. , vol.10 , pp. 139-147
    • Davies, D.R.1    Interthal, H.2    Champoux, J.J.3    Hol, W.G.4
  • 18
    • 0842282752 scopus 로고    scopus 로고
    • Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes
    • Davies,D.R., Interthal,H., Champoux,J.J. and Hol,W.G. (2004) Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J. Med. Chem., 47, 829-837.
    • (2004) J. Med. Chem. , vol.47 , pp. 829-837
    • Davies, D.R.1    Interthal, H.2    Champoux, J.J.3    Hol, W.G.4
  • 21
    • 0035834150 scopus 로고    scopus 로고
    • The tyrosyl-DNA phosphodiesteraseTdp1 is a member of the phospholipase D superfamily
    • Interthal,H., Pouliot,J.J. and Champoux,J.J. (2001) The tyrosyl-DNA phosphodiesteraseTdp1 is a member of the phospholipase D superfamily. Proc. Natl Acad. Sci. USA, 98, 12009-12014.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 12009-12014
    • Interthal, H.1    Pouliot, J.J.2    Champoux, J.J.3
  • 22
    • 0034257921 scopus 로고    scopus 로고
    • Vaccinia topoisomerase and Cre recombinase catalyze direct ligation of activated DNA substrates containing a 3′ -para-nitrophenyl phosphate ester
    • Woodfield,G., Cheng,C., Shuman,S. and Burgin,A.B. (2000) Vaccinia topoisomerase and Cre recombinase catalyze direct ligation of activated DNA substrates containing a 3′-para-nitrophenyl phosphate ester. Nucleic Acids Res., 28, 3323-3331.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3323-3331
    • Woodfield, G.1    Cheng, C.2    Shuman, S.3    Burgin, A.B.4
  • 23
    • 0036373079 scopus 로고    scopus 로고
    • Kinetic studies of human tyrosyl-DNA phosphodiesterase, an enzyme in the topoisomerase I DNA repair pathway
    • Cheng,T.J., Rey,P.G., Poon,T. and Kan,C.C. (2002) Kinetic studies of human tyrosyl-DNA phosphodiesterase, an enzyme in the topoisomerase I DNA repair pathway. Eur. J. Biochem., 269, 3697-3704.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 3697-3704
    • Cheng, T.J.1    Rey, P.G.2    Poon, T.3    Kan, C.C.4
  • 24
    • 0024100692 scopus 로고
    • Chemical development in the design of oligonucleotide probes for binding to DNA and RNA
    • Shabarova,Z.A. (1988) Chemical development in the design of oligonucleotide probes for binding to DNA and RNA. Biochimie, 70, 1323-1334.
    • (1988) Biochimie , vol.70 , pp. 1323-1334
    • Shabarova, Z.A.1
  • 25
    • 0036493236 scopus 로고    scopus 로고
    • Processing of nucleopeptides mimicking the topoisomerase I-DNA covalent complex by tyrosyl-DNA phosphodiesterase
    • Debethune,L., Kohlhagen,G., Grandas,A. and Pommier,Y. (2002) Processing of nucleopeptides mimicking the topoisomerase I-DNA covalent complex by tyrosyl-DNA phosphodiesterase. Nucleic Acids Res., 30, 1198-1204.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1198-1204
    • Debethune, L.1    Kohlhagen, G.2    Grandas, A.3    Pommier, Y.4
  • 26
    • 0026710324 scopus 로고
    • Amplification systems in immunoenzymatic techniques
    • Avrameas,S. (1992) Amplification systems in immunoenzymatic techniques. J. Immunol. Methods, 150, 23-32.
    • (1992) J. Immunol. Methods , vol.150 , pp. 23-32
    • Avrameas, S.1
  • 27
    • 0024534631 scopus 로고
    • A rapid micro method for counting cells 'in situ' using a fluorogenic alkaline phosphatase enzyme assay
    • Huschtscha,L.I., Lucibello,F.C. and Bodmer,W.F. (1989) A rapid micro method for counting cells 'in situ' using a fluorogenic alkaline phosphatase enzyme assay. In Vitro Cell. Dev. Biol., 25, 105-108.
    • (1989) Vitro Cell Dev. Biol. , vol.25 , pp. 105-108
    • Huschtscha, L.I.1    Lucibello, F.C.2    Bodmer, W.F.3
  • 28
    • 0026009425 scopus 로고
    • Fluorogenic and chromogenic substrates used in bacterial diagnostics
    • Manafi,M., Kneifel,W. and Bascomb,S. (1991) Fluorogenic and chromogenic substrates used in bacterial diagnostics. Microbiol. Rev., 55, 335-348.
    • (1991) Microbiol. Rev. , vol.55 , pp. 335-348
    • Manafi, M.1    Kneifel, W.2    Bascomb, S.3
  • 29
    • 0034871092 scopus 로고    scopus 로고
    • Pathways for repair of topoisomerase I covalent complexes in Saccharomyces cerevisiae
    • Pouliot,J.J., Robertson,C.A. and Nash,H.A. (2001) Pathways for repair of topoisomerase I covalent complexes in Saccharomyces cerevisiae. Genes Cells, 6, 677-687.
    • (2001) Genes Cells , vol.6 , pp. 677-687
    • Pouliot, J.J.1    Robertson, C.A.2    Nash, H.A.3
  • 30
    • 2342517437 scopus 로고    scopus 로고
    • The role of TDP1 from budding yeast in the repair of DNA damage
    • Liu,C., Pouliot,J.J. and Nash,H.A. (2004) The role of TDP1 from budding yeast in the repair of DNA damage. DNA Repair (Amst.), 3, 593-601.
    • (2004) DNA Repair (Amst.) , vol.3 , pp. 593-601
    • Liu, C.1    Pouliot, J.J.2    Nash, H.A.3
  • 31
    • 0037178839 scopus 로고    scopus 로고
    • Conversion of phosphoglycolate to phosphate termini on 3′ overhangs of DNA double strand breaks by the human tyrosyl-DNA phosphodiesterase hTdp1
    • Inamdar,K.V., Pouliot,J.J., Zhou,T., Lees-Miller,S.P., Rasouli-Nia,A. and Povirk,L.F. (2002) Conversion of phosphoglycolate to phosphate termini on 3′ overhangs of DNA double strand breaks by the human tyrosyl-DNA phosphodiesterase hTdp1. J. Biol. Chem., 277, 27162-27168.
    • (2002) J. Biol. Chem. , vol.277 , pp. 27162-27168
    • Inamdar, K.V.1    Pouliot, J.J.2    Zhou, T.3    Lees-Miller, S.P.4    Rasouli-Nia, A.5    Povirk, L.F.6


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