-
1
-
-
0029958378
-
A eukaryotic enzyme that can disjoin dead-end covalent complexes between DNA and type I topoisomerases
-
Yang S.W., Burgin A.B. Jr., Huizenga B.N., Robertson C.A., Yao K.C., Nash H.A. A eukaryotic enzyme that can disjoin dead-end covalent complexes between DNA and type I topoisomerases. Proc. Natl. Acad. Sci. USA. 93:1996;11534-11539.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 11534-11539
-
-
Yang, S.W.1
Burgin A.B., Jr.2
Huizenga, B.N.3
Robertson, C.A.4
Yao, K.C.5
Nash, H.A.6
-
2
-
-
0034124053
-
Conversion of topoisomerase I cleavage complexes on the leading strand of ribosomal DNA into 5′-phosphorylated DNA double-strand breaks by replication runoff
-
Strumberg D., Pilon A.A., Smith M., Hickey R., Malkas L., Pommier Y. Conversion of topoisomerase I cleavage complexes on the leading strand of ribosomal DNA into 5′-phosphorylated DNA double-strand breaks by replication runoff. Mol. Cell. Biol. 20:2000;3977-3987.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 3977-3987
-
-
Strumberg, D.1
Pilon, A.A.2
Smith, M.3
Hickey, R.4
Malkas, L.5
Pommier, Y.6
-
3
-
-
0033663604
-
Topoisomerase I-mediated DNA damage
-
Pourquier P., Pommier Y. Topoisomerase I-mediated DNA damage. Adv. Cancer Res. 80:2001;189-216.
-
(2001)
Adv. Cancer Res.
, vol.80
, pp. 189-216
-
-
Pourquier, P.1
Pommier, Y.2
-
4
-
-
0032033603
-
Diversity of DNA topoisomerases I and inhibitors
-
Pommier Y. Diversity of DNA topoisomerases I and inhibitors. Biochimie. 80:1998;255-270.
-
(1998)
Biochimie
, vol.80
, pp. 255-270
-
-
Pommier, Y.1
-
5
-
-
0033569666
-
Yeast gene for a Tyr-DNA phosphodiesterase that repairs topoisomerase I complexes
-
Pouliot J.J., Yao K.C., Robertson C.A., Nash H.A. Yeast gene for a Tyr-DNA phosphodiesterase that repairs topoisomerase I complexes. Science. 286:1999;552-555.
-
(1999)
Science
, vol.286
, pp. 552-555
-
-
Pouliot, J.J.1
Yao, K.C.2
Robertson, C.A.3
Nash, H.A.4
-
6
-
-
0034871092
-
Pathways for repair of topoisomerase I covalent complexes in Saccharomyces cerevisiae
-
Pouliot J.J., Robertson C.A., Nash H.A. Pathways for repair of topoisomerase I covalent complexes in Saccharomyces cerevisiae. Genes Cells. 6:2001;677-687.
-
(2001)
Genes Cells
, vol.6
, pp. 677-687
-
-
Pouliot, J.J.1
Robertson, C.A.2
Nash, H.A.3
-
7
-
-
0037108948
-
Yeast Tdp1 and Rad1-Rad10 function as redundant pathways for repairing Top1 replicative damage
-
Vance J.R., Wilson T.E. Yeast Tdp1 and Rad1-Rad10 function as redundant pathways for repairing Top1 replicative damage. Proc. Natl. Acad. Sci. USA. 99:2002;13669-13674.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 13669-13674
-
-
Vance, J.R.1
Wilson, T.E.2
-
8
-
-
0037069381
-
Repair of topoisomerase I covalent complexes in the absence of the tyrosyl-DNA phosphodiesterase Tdp1
-
Liu C., Pouliot J.J., Nash H.A. Repair of topoisomerase I covalent complexes in the absence of the tyrosyl-DNA phosphodiesterase Tdp1. Proc. Natl. Acad. Sci. USA. 99:2002;14970-14975.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14970-14975
-
-
Liu, C.1
Pouliot, J.J.2
Nash, H.A.3
-
9
-
-
18644386254
-
Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy
-
Takashima H., Boerkoel C.F., John J., Saifi G.M., Salih M.A.M., Armstrong D., Mao Y., Quiocho F.A., Roa B.B., Nakagawa M.et al. Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy. Nat. Genet. 32:2002;267-272.
-
(2002)
Nat. Genet.
, vol.32
, pp. 267-272
-
-
Takashima, H.1
Boerkoel, C.F.2
John, J.3
Saifi, G.M.4
Salih, M.A.M.5
Armstrong, D.6
Mao, Y.7
Quiocho, F.A.8
Roa, B.B.9
Nakagawa, M.10
-
10
-
-
0035834150
-
The tyrosyl-DNA phosphodiesterase Tdp1 is a member of the phospholipase D superfamily
-
Interthal H., Pouliot J.J., Champoux J.J. The tyrosyl-DNA phosphodiesterase Tdp1 is a member of the phospholipase D superfamily. Proc. Natl. Acad. Sci. USA. 98:2001;12009-12014.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 12009-12014
-
-
Interthal, H.1
Pouliot, J.J.2
Champoux, J.J.3
-
11
-
-
0036178630
-
The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1
-
Davies D.R., Interthal H., Champoux J.J., Hol W.G.J. The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1. Structure. 10:2002;237-248.
-
(2002)
Structure
, vol.10
, pp. 237-248
-
-
Davies, D.R.1
Interthal, H.2
Champoux, J.J.3
Hol, W.G.J.4
-
12
-
-
0030200347
-
A duplicated catalytic motif in a new superfamily of phosphohydrolases and phospholipid synthases that includes poxvirus envelope proteins
-
Koonin E.V. A duplicated catalytic motif in a new superfamily of phosphohydrolases and phospholipid synthases that includes poxvirus envelope proteins. Trends Biochem. Sci. 21:1996;242-243.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 242-243
-
-
Koonin, E.V.1
-
14
-
-
0029921149
-
A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: Identification of duplicated repeats and potential active site residues
-
Ponting C.P., Kerr I.D. A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases. identification of duplicated repeats and potential active site residues Protein Sci. 5:1996;914-922.
-
(1996)
Protein Sci.
, vol.5
, pp. 914-922
-
-
Ponting, C.P.1
Kerr, I.D.2
-
15
-
-
0034613269
-
Novel subtype of type IIs restriction enzymes
-
Sapranauskas R., Sasnauskas G., Lagunavicius A., Vikaitis G., Lubys A., Siksnys V. Novel subtype of type IIs restriction enzymes. J. Biol. Chem. 275:2000;30878-30885.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 30878-30885
-
-
Sapranauskas, R.1
Sasnauskas, G.2
Lagunavicius, A.3
Vikaitis, G.4
Lubys, A.5
Siksnys, V.6
-
16
-
-
0033010811
-
Crystal structure of a phospholipase D family member
-
Stuckey J.A., Dixon J.E. Crystal structure of a phospholipase D family member. Nat. Struct. Biol. 6:1999;278-284.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 278-284
-
-
Stuckey, J.A.1
Dixon, J.E.2
-
17
-
-
0034660230
-
The first crystal structure of a phospholipase D
-
Leiros I., Secundo F., Zambonelli C., Servi S., Hough E. The first crystal structure of a phospholipase D. Struct. Fold. Des. 8:2000;655-667.
-
(2000)
Struct. Fold. Des.
, vol.8
, pp. 655-667
-
-
Leiros, I.1
Secundo, F.2
Zambonelli, C.3
Servi, S.4
Hough, E.5
-
18
-
-
0014945183
-
On the mechanism of enzymatic phosphatidylation. Biosynthesis of cardiolipin catalyzed by phospholipase D
-
Stanacev N.Z., Stuhne-Sekalec L. On the mechanism of enzymatic phosphatidylation. Biosynthesis of cardiolipin catalyzed by phospholipase D. Biochim. Biophys. Acta. 210:1970;350-352.
-
(1970)
Biochim. Biophys. Acta
, vol.210
, pp. 350-352
-
-
Stanacev, N.Z.1
Stuhne-Sekalec, L.2
-
19
-
-
0021759441
-
Phospholipids chiral at phosphorus. Synthesis of chiral phosphatidylcholine and stereochemistry of phospholipase D
-
Bruzik K., Tsai M.D. Phospholipids chiral at phosphorus. Synthesis of chiral phosphatidylcholine and stereochemistry of phospholipase D. Biochemistry. 23:1984;1656-1661.
-
(1984)
Biochemistry
, vol.23
, pp. 1656-1661
-
-
Bruzik, K.1
Tsai, M.D.2
-
20
-
-
0023668239
-
Phospholipids chiral at phosphorus. Steric course of the reactions catalyzed by phosphatidylserine synthase from Escherichia coli and yeast
-
Raetz C.R., Carman G.M., Dowhan W., Jiang R.T., Waszkuc W., Loffredo W., Tsai M.D. Phospholipids chiral at phosphorus. Steric course of the reactions catalyzed by phosphatidylserine synthase from Escherichia coli and yeast. Biochemistry. 26:1987;4022-4027.
-
(1987)
Biochemistry
, vol.26
, pp. 4022-4027
-
-
Raetz, C.R.1
Carman, G.M.2
Dowhan, W.3
Jiang, R.T.4
Waszkuc, W.5
Loffredo, W.6
Tsai, M.D.7
-
21
-
-
0032482941
-
Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate
-
Gottlin E.B., Rudolph A.E., Zhao Y., Matthews H.R., Dixon J.E. Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate. Proc. Natl. Acad. Sci. USA. 95:1998;9202-9207.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9202-9207
-
-
Gottlin, E.B.1
Rudolph, A.E.2
Zhao, Y.3
Matthews, H.R.4
Dixon, J.E.5
-
22
-
-
0033597132
-
Expression, characterization, and mutagenesis of the Yersinia pestis murine toxin, a phospholipase D superfamily member
-
Rudolph A.E., Stuckey J.A., Zhao Y., Matthews H.R., Patton W.A., Moss J., Dixon J.E. Expression, characterization, and mutagenesis of the Yersinia pestis murine toxin, a phospholipase D superfamily member. J. Biol. Chem. 274:1999;11824-11831.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 11824-11831
-
-
Rudolph, A.E.1
Stuckey, J.A.2
Zhao, Y.3
Matthews, H.R.4
Patton, W.A.5
Moss, J.6
Dixon, J.E.7
-
23
-
-
0037073479
-
Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate and tungstate-inhibited structures
-
Davies D.R., Interthal H., Champoux J.J., Hol W.G.J. Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate and tungstate-inhibited structures. J. Mol. Biol. 324:2002;917-932.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 917-932
-
-
Davies, D.R.1
Interthal, H.2
Champoux, J.J.3
Hol, W.G.J.4
-
24
-
-
0032489634
-
Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA
-
Redinbo M.R., Stewart L., Kuhn P., Champoux J.J., Hol W.G.J. Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science. 279:1998;1504-1513.
-
(1998)
Science
, vol.279
, pp. 1504-1513
-
-
Redinbo, M.R.1
Stewart, L.2
Kuhn, P.3
Champoux, J.J.4
Hol, W.G.J.5
-
25
-
-
0037178839
-
Conversion of phosphoglycolate to phosphate termini on 3′ overhangs of DNA double-strand breaks by the human tyrosyl-DNA phosphodiesterase
-
Inamdar K.V., Pouliot J.J., Zhou T., Lees-Miller S.P., Rasouli-Nia A., Povirk L.F. Conversion of phosphoglycolate to phosphate termini on 3′ overhangs of DNA double-strand breaks by the human tyrosyl-DNA phosphodiesterase. J. Biol. Chem. 277:2002;27162-27168.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 27162-27168
-
-
Inamdar, K.V.1
Pouliot, J.J.2
Zhou, T.3
Lees-Miller, S.P.4
Rasouli-Nia, A.5
Povirk, L.F.6
-
26
-
-
0032489675
-
A model for the mechanism of human topoisomerase I
-
Stewart L., Redinbo M.R., Qiu X., Hol W.G., Champoux J.J. A model for the mechanism of human topoisomerase I. Science. 279:1998;1534-1541.
-
(1998)
Science
, vol.279
, pp. 1534-1541
-
-
Stewart, L.1
Redinbo, M.R.2
Qiu, X.3
Hol, W.G.4
Champoux, J.J.5
-
27
-
-
0021760306
-
Nucleotide sequence preference at rat liver and wheat germ type I DNA topoisomerase breakage sites in duplex SV40 DNA
-
Been M.D., Burgess R.R., Champoux J.J. Nucleotide sequence preference at rat liver and wheat germ type I DNA topoisomerase breakage sites in duplex SV40 DNA. Nucleic Acids Res. 12:1984;3097-3114.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 3097-3114
-
-
Been, M.D.1
Burgess, R.R.2
Champoux, J.J.3
-
28
-
-
0027231965
-
Analysis of the biased distribution of topoisomerase I break sites on replicating simian virus 40 DNA
-
Parker L.H., Champoux J.J. Analysis of the biased distribution of topoisomerase I break sites on replicating simian virus 40 DNA. J. Mol. Biol. 23:1993;6-18.
-
(1993)
J. Mol. Biol.
, vol.23
, pp. 6-18
-
-
Parker, L.H.1
Champoux, J.J.2
-
29
-
-
0029960235
-
X-ray structure of the magnesium(II)-ADP-vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 angstrom resolution
-
Smith C.A., Rayment I. X-ray structure of the magnesium(II)-ADP-vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 angstrom resolution. Biochemistry. 35:1996;5404-5417.
-
(1996)
Biochemistry
, vol.35
, pp. 5404-5417
-
-
Smith, C.A.1
Rayment, I.2
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
0028103275
-
The CCP4 (Collaborative Computational Project 4) suite: Programs for protein crystallography
-
CCP4 The CCP4 (Collaborative Computational Project 4) suite. programs for protein crystallography Acta Crystallogr. D. 50:1994;760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
33
-
-
0032790081
-
XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density
-
McRee D.E. XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125:1999;156-165.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
35
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., Honig B. Protein folding and association. insights from the interfacial and thermodynamic properties of hydrocarbons Proteins. 11:1991;281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
|