메뉴 건너뛰기




Volumn 47, Issue 2, 2008, Pages 841-854

The phylogeny and evolution of deoxyribonuclease II: An enzyme essential for lysosomal DNA degradation

Author keywords

Algae; Deoxyribonuclease II; Eukaryotes; Phagotrophy; Protists

Indexed keywords

DEOXYRIBONUCLEASE; DEOXYRIBONUCLEASE II;

EID: 42749084992     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.11.033     Document Type: Article
Times cited : (16)

References (42)
  • 2
    • 0037022379 scopus 로고    scopus 로고
    • The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
    • Bapteste E., Brinkmann H., Lee J.A., et al. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proceedings of the National Academy of Sciences USA 99 (2002) 1414-1419
    • (2002) Proceedings of the National Academy of Sciences USA , vol.99 , pp. 1414-1419
    • Bapteste, E.1    Brinkmann, H.2    Lee, J.A.3
  • 3
    • 21644441587 scopus 로고    scopus 로고
    • Do orthologous gene phylogenies really support tree thinking?
    • Bapteste E., Susko E., Leigh J., et al. Do orthologous gene phylogenies really support tree thinking?. BMC Evolutionary Biology 5 (2005) 33-43
    • (2005) BMC Evolutionary Biology , vol.5 , pp. 33-43
    • Bapteste, E.1    Susko, E.2    Leigh, J.3
  • 4
    • 0002552458 scopus 로고
    • Evolution and kingdoms of organisms from the standpoint of a mycologist
    • Barr D.J.S. Evolution and kingdoms of organisms from the standpoint of a mycologist. Mycologia 84 (1992) 1-11
    • (1992) Mycologia , vol.84 , pp. 1-11
    • Barr, D.J.S.1
  • 6
    • 33645553223 scopus 로고    scopus 로고
    • Phylogeny and metasystematics of phagotrophic heterokonts
    • Cavalier-Smith T., and Chao E.E.Y. Phylogeny and metasystematics of phagotrophic heterokonts. Journal of Molecular Evolution 62 (2006) 388-420
    • (2006) Journal of Molecular Evolution , vol.62 , pp. 388-420
    • Cavalier-Smith, T.1    Chao, E.E.Y.2
  • 7
    • 0014321776 scopus 로고
    • A comparative study of acid deoxyribonucleases extracted from different tissues and species
    • Cordonnier C., and Bernardi G. A comparative study of acid deoxyribonucleases extracted from different tissues and species. Canadian Journal of Biochemistry 46 (1968) 989-995
    • (1968) Canadian Journal of Biochemistry , vol.46 , pp. 989-995
    • Cordonnier, C.1    Bernardi, G.2
  • 8
    • 27744583504 scopus 로고    scopus 로고
    • DNase II is a member of the phospholipase D superfamily
    • Cymerman I.A., Meiss G., and Bujnicki J.M. DNase II is a member of the phospholipase D superfamily. Bioinformatics 1 (2005) 3959-3962
    • (2005) Bioinformatics , vol.1 , pp. 3959-3962
    • Cymerman, I.A.1    Meiss, G.2    Bujnicki, J.M.3
  • 9
    • 0035063264 scopus 로고    scopus 로고
    • Evolutionary relationships among "Jakobid" flagellates, as indicated by alpha- and beta-tubulin phylogenies
    • Edgcomb V.P., Roger A.J., Simpson A.G.B., et al. Evolutionary relationships among "Jakobid" flagellates, as indicated by alpha- and beta-tubulin phylogenies. Molecular Biology and Evolution 18 (2001) 514-522
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 514-522
    • Edgcomb, V.P.1    Roger, A.J.2    Simpson, A.G.B.3
  • 10
    • 0344009629 scopus 로고    scopus 로고
    • DNase II: genes, enzymes, and function
    • Evans C.J., and Aguilera R.J. DNase II: genes, enzymes, and function. Gene 322 (2000) 1-15
    • (2000) Gene , vol.322 , pp. 1-15
    • Evans, C.J.1    Aguilera, R.J.2
  • 11
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27 (1978) 401-410
    • (1978) Systematic Zoology , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 12
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny Inference Package (Version 3.2)
    • Felsenstein J. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5 (1989) 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 15
    • 0036189930 scopus 로고    scopus 로고
    • Deoxyribonuclease-II purified from Euglena gracilis SM-ZK, a chloroplast-lacking mutant: comparison with porcine spleen deoxyribonuclease-II
    • Ikeda S., and Takata N. Deoxyribonuclease-II purified from Euglena gracilis SM-ZK, a chloroplast-lacking mutant: comparison with porcine spleen deoxyribonuclease-II. Comparative Biochemistry and Physiology B 131 (2002) 519-525
    • (2002) Comparative Biochemistry and Physiology B , vol.131 , pp. 519-525
    • Ikeda, S.1    Takata, N.2
  • 17
    • 0035947178 scopus 로고    scopus 로고
    • Requirement of DNase II for definitive erythropoiesis in the mouse fetal liver
    • Kawane K., Fukuyama H., Kondoh G., et al. Requirement of DNase II for definitive erythropoiesis in the mouse fetal liver. Science 292 (2001) 1546-1549
    • (2001) Science , vol.292 , pp. 1546-1549
    • Kawane, K.1    Fukuyama, H.2    Kondoh, G.3
  • 18
    • 33750465224 scopus 로고    scopus 로고
    • Chronic polyarthritis caused by mammalian DNA that escapes from degradation in macrophages
    • Kawane K., Ohtani M., Miwa K., et al. Chronic polyarthritis caused by mammalian DNA that escapes from degradation in macrophages. Nature 443 (2006) 998-1002
    • (2006) Nature , vol.443 , pp. 998-1002
    • Kawane, K.1    Ohtani, M.2    Miwa, K.3
  • 19
    • 0034636707 scopus 로고    scopus 로고
    • Deoxyribonuclease-II: structure and location of murine genes, and comparison with Caenorhabditis and human homologs
    • Krieser R.J., and Eastman A. Deoxyribonuclease-II: structure and location of murine genes, and comparison with Caenorhabditis and human homologs. Gene 252 (2000) 155-162
    • (2000) Gene , vol.252 , pp. 155-162
    • Krieser, R.J.1    Eastman, A.2
  • 20
    • 0036707510 scopus 로고    scopus 로고
    • Deoxyribonuclease II alpha is required during the phagocytic phase of apoptosis and its loss causes perinatal lethality
    • Krieser R.J., MacLea K.S., Longnecker D.S., et al. Deoxyribonuclease II alpha is required during the phagocytic phase of apoptosis and its loss causes perinatal lethality. Cell Death and Differentiation 9 (2002) 956-962
    • (2002) Cell Death and Differentiation , vol.9 , pp. 956-962
    • Krieser, R.J.1    MacLea, K.S.2    Longnecker, D.S.3
  • 21
    • 0030916417 scopus 로고    scopus 로고
    • DFF, a heterodimeric protein that functions downstream of Caspase-3 to trigger DNA fragmentation during apoptosis
    • Liu X., Zou H., Slaughter C., and Wang X. DFF, a heterodimeric protein that functions downstream of Caspase-3 to trigger DNA fragmentation during apoptosis. Cell 89 (1997) 175-184
    • (1997) Cell , vol.89 , pp. 175-184
    • Liu, X.1    Zou, H.2    Slaughter, C.3    Wang, X.4
  • 22
    • 0034636713 scopus 로고    scopus 로고
    • The C elegans apoptotic nuclease Nuc-1 is related in sequence and activity to mammalian DNase II
    • Lyon C.J., Evans C.J., Bill B.R., Otsuka A.J., and Aguilera R.J. The C elegans apoptotic nuclease Nuc-1 is related in sequence and activity to mammalian DNase II. Gene 252 (2000) 146-154
    • (2000) Gene , vol.252 , pp. 146-154
    • Lyon, C.J.1    Evans, C.J.2    Bill, B.R.3    Otsuka, A.J.4    Aguilera, R.J.5
  • 23
    • 0037434627 scopus 로고    scopus 로고
    • A family history of deoxyribonuclease II: surprises from Trichinella spiralis and Burkholderia pseudomallei
    • MacLea K.S., Krieser R.J., and Eastman A. A family history of deoxyribonuclease II: surprises from Trichinella spiralis and Burkholderia pseudomallei. Gene 305 (2003) 1-12
    • (2003) Gene , vol.305 , pp. 1-12
    • MacLea, K.S.1    Krieser, R.J.2    Eastman, A.3
  • 24
    • 0032989560 scopus 로고    scopus 로고
    • Enhanced expression of nuclease genes in leaves of barley plants under salt stress
    • Muramoto Y., Watanabe A., Nakamura T., and Takabe T. Enhanced expression of nuclease genes in leaves of barley plants under salt stress. Gene 234 (1999) 315-321
    • (1999) Gene , vol.234 , pp. 315-321
    • Muramoto, Y.1    Watanabe, A.2    Nakamura, T.3    Takabe, T.4
  • 25
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to display phylogenetic trees on personal computers
    • Page R.D.M. TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12 (1996) 357-358
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 26
    • 0032744297 scopus 로고    scopus 로고
    • The diversity of eukaryotes
    • (Supplement)
    • Patterson D.J. The diversity of eukaryotes. American Naturalist 154 (1999) S96-S124 (Supplement)
    • (1999) American Naturalist , vol.154
    • Patterson, D.J.1
  • 27
    • 33747827303 scopus 로고    scopus 로고
    • DNase II deficiency impairs innate immune function in Drosophila
    • Seong C.S., Varela-Ramirez A., and Aguilera R.J. DNase II deficiency impairs innate immune function in Drosophila. Cellular Immunology 240 (2006) 5-13
    • (2006) Cellular Immunology , vol.240 , pp. 5-13
    • Seong, C.S.1    Varela-Ramirez, A.2    Aguilera, R.J.3
  • 28
    • 33845952655 scopus 로고    scopus 로고
    • Human lysosomal DNase II-alpha contains two requisite PLD-signature motifs: evidence for a pseudoimeric structure of the active enzyme species
    • Schaefer P., Cymerman I.A., Bujnicki J.M., and Meiss G. Human lysosomal DNase II-alpha contains two requisite PLD-signature motifs: evidence for a pseudoimeric structure of the active enzyme species. Protein Science 16 (2007) 82-91
    • (2007) Protein Science , vol.16 , pp. 82-91
    • Schaefer, P.1    Cymerman, I.A.2    Bujnicki, J.M.3    Meiss, G.4
  • 29
    • 17844370012 scopus 로고    scopus 로고
    • DNase II polymorphisms associated with risk of renal disorder among systemic lupus erythematosus patients
    • Shin H.D., Park B.L., Cheong H.S., Lee H.S., Jun J.B., and Bae S.C. DNase II polymorphisms associated with risk of renal disorder among systemic lupus erythematosus patients. Journal of Human Genetics 50 (2005) 107-111
    • (2005) Journal of Human Genetics , vol.50 , pp. 107-111
    • Shin, H.D.1    Park, B.L.2    Cheong, H.S.3    Lee, H.S.4    Jun, J.B.5    Bae, S.C.6
  • 30
    • 33244466796 scopus 로고    scopus 로고
    • Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of primitive eukaryotes
    • Simpson A.G.B., Inagaki Y., and Roger A.J. Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of primitive eukaryotes. Molecular Biology and Evolution 23 (2005) 615-625
    • (2005) Molecular Biology and Evolution , vol.23 , pp. 615-625
    • Simpson, A.G.B.1    Inagaki, Y.2    Roger, A.J.3
  • 32
    • 0031459312 scopus 로고    scopus 로고
    • History assignment: when was the mitochondrion founded
    • Sogin M.L. History assignment: when was the mitochondrion founded. Current Opinion in Genetics and Development 7 (1997) 792-799
    • (1997) Current Opinion in Genetics and Development , vol.7 , pp. 792-799
    • Sogin, M.L.1
  • 33
    • 0031893975 scopus 로고    scopus 로고
    • Evolution of the protists and protistan parasites from the perspective of molecular systematics
    • Sogin M.L., and Silberman J.D. Evolution of the protists and protistan parasites from the perspective of molecular systematics. International Journal of Parasitology 28 (1998) 11-20
    • (1998) International Journal of Parasitology , vol.28 , pp. 11-20
    • Sogin, M.L.1    Silberman, J.D.2
  • 34
    • 0032871269 scopus 로고    scopus 로고
    • Long branch attraction and the rDNA model of early eukaryote evolution
    • Stiller J.W., and Hall B.D. Long branch attraction and the rDNA model of early eukaryote evolution. Molecular Biology and Evolution 16 (1999) 1270-1279
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1270-1279
    • Stiller, J.W.1    Hall, B.D.2
  • 35
    • 0034986210 scopus 로고    scopus 로고
    • Are red algae plants? A critical evaluation of three key molecular data sets
    • Stiller J.W., Riley J., and Hall B.D. Are red algae plants? A critical evaluation of three key molecular data sets. Journal of Molecular Evolution 52 (2004) 527-539
    • (2004) Journal of Molecular Evolution , vol.52 , pp. 527-539
    • Stiller, J.W.1    Riley, J.2    Hall, B.D.3
  • 36
    • 30744433373 scopus 로고    scopus 로고
    • The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny
    • Stiller J.W., and Harrell L. The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny. BMC Evolutionary Biology 5 (2005) 71
    • (2005) BMC Evolutionary Biology , vol.5 , pp. 71
    • Stiller, J.W.1    Harrell, L.2
  • 37
    • 0027968068 scopus 로고
    • Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 1642490608 scopus 로고    scopus 로고
    • University of Chicago Press, Chicago, IL
    • Valentine J.W. The Origin of Phyla (2004), University of Chicago Press, Chicago, IL
    • (2004) The Origin of Phyla
    • Valentine, J.W.1
  • 40
    • 0034162713 scopus 로고    scopus 로고
    • Nuc1, a C. elegans DNase-II homolog, functions in intermediate step of DNA degradation during apoptosis
    • Wu Y.-C., Stanfield G.M., and Horvitz H.R. Nuc1, a C. elegans DNase-II homolog, functions in intermediate step of DNA degradation during apoptosis. Genes and Development 14 (2000) 536-548
    • (2000) Genes and Development , vol.14 , pp. 536-548
    • Wu, Y.-C.1    Stanfield, G.M.2    Horvitz, H.R.3
  • 41
    • 4444248383 scopus 로고    scopus 로고
    • Purification and characterization of acid deoxyribonuclease from the cultured mushroom Cordyceps sinensis
    • Ye M., Zheng H., Ying F., et al. Purification and characterization of acid deoxyribonuclease from the cultured mushroom Cordyceps sinensis. Journal of Biochemistry and Molecular Biology 37 (2003) 466-473
    • (2003) Journal of Biochemistry and Molecular Biology , vol.37 , pp. 466-473
    • Ye, M.1    Zheng, H.2    Ying, F.3
  • 42
    • 42749083831 scopus 로고    scopus 로고
    • Zuccon, A., Zuccon, D., 2006. MrEnt v1.2, distributed by the authors. Department of Vertebrate Zoology and Molecular Systematics Laboratory, Swedish Museum of Natural History, Stockholm.
    • Zuccon, A., Zuccon, D., 2006. MrEnt v1.2, distributed by the authors. Department of Vertebrate Zoology and Molecular Systematics Laboratory, Swedish Museum of Natural History, Stockholm.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.