-
1
-
-
33748939584
-
Prevalence of off-target effects in Drosophila RNA interference screens
-
(Epub 2006 Sep 10)
-
Ma Y, Creanga A, Lum L, Beachy PA. Prevalence of off-target effects in Drosophila RNA interference screens. Nature 2006; 443:359-63, (Epub 2006 Sep 10).
-
(2006)
Nature
, vol.443
, pp. 359-363
-
-
Ma, Y.1
Creanga, A.2
Lum, L.3
Beachy, P.A.4
-
2
-
-
33748994797
-
Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays
-
Kulkarni MM, Booker M, Silver SJ, Friedman A, Hong P, Perrimon N, Mathey-Prevot B. Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays. Nat Methods 2006; 3:833-8.
-
(2006)
Nat Methods
, vol.3
, pp. 833-838
-
-
Kulkarni, M.M.1
Booker, M.2
Silver, S.J.3
Friedman, A.4
Hong, P.5
Perrimon, N.6
Mathey-Prevot, B.7
-
3
-
-
11844254453
-
High-throughput RNA interference screens in Drosophila tissue culture cells
-
Armknecht S, Boutros M, Kiger A, Nybakken K, Mathey-Prevot B, Perrimon N. High-throughput RNA interference screens in Drosophila tissue culture cells. Methods Enzymol 2005; 392:55-73.
-
(2005)
Methods Enzymol
, vol.392
, pp. 55-73
-
-
Armknecht, S.1
Boutros, M.2
Kiger, A.3
Nybakken, K.4
Mathey-Prevot, B.5
Perrimon, N.6
-
4
-
-
33644873679
-
FlyRNAi: The Drosophila RNAi screening center database
-
Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B. FlyRNAi: The Drosophila RNAi screening center database. Nucleic Acids Res 2006; 34:D489-94.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Flockhart, I.1
Booker, M.2
Kiger, A.3
Boutros, M.4
Armknecht, S.5
Ramadan, N.6
Richardson, K.7
Xu, A.8
Perrimon, N.9
Mathey-Prevot, B.10
-
5
-
-
10744219688
-
Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells
-
(Epub 2004 Feb 09)
-
Scacheri PC, Rozenblatt-Rosen O, Caplen NJ, Wolfsberg TG, Umayam L, Lee JC, Hughes CM, Shanmugam KS, Bhattacharjee A, Meyerson M, Collins FS. Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells. Proc Natl Acad Sci USA 2004; 101:1892-7, (Epub 2004 Feb 09).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1892-1897
-
-
Scacheri, P.C.1
Rozenblatt-Rosen, O.2
Caplen, N.J.3
Wolfsberg, T.G.4
Umayam, L.5
Lee, J.C.6
Hughes, C.M.7
Shanmugam, K.S.8
Bhattacharjee, A.9
Meyerson, M.10
Collins, F.S.11
-
6
-
-
0142173075
-
Small RNAs with imperfect match to endogenous mRNA repress translation: Implications for off-target activity of small inhibitory RNA in mammalian cells
-
(Epub 2003 Sep 2)
-
Saxena S, Jonsson ZO, Dutta A. Small RNAs with imperfect match to endogenous mRNA repress translation: Implications for off-target activity of small inhibitory RNA in mammalian cells. J Biol Chem 2003; 278:44312-9, (Epub 2003 Sep 2).
-
(2003)
J Biol Chem
, vol.278
, pp. 44312-44319
-
-
Saxena, S.1
Jonsson, Z.O.2
Dutta, A.3
-
7
-
-
23344438420
-
siRNA-mediated off-target gene silencing triggered by a 7 nt complementation
-
(Print 2005)
-
Lin X, Ruan X, Anderson MG, McDowell JA, Kroeger PE, Fesik SW, Shen Y. siRNA-mediated off-target gene silencing triggered by a 7 nt complementation. Nucleic Acids Res 2005; 33:4527-35, (Print 2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4527-4535
-
-
Lin, X.1
Ruan, X.2
Anderson, M.G.3
McDowell, J.A.4
Kroeger, P.E.5
Fesik, S.W.6
Shen, Y.7
-
8
-
-
4744373229
-
Noise amidst the silence: Off-target effects of siRNAs?
-
Jackson AL, Linsley PS. Noise amidst the silence: Off-target effects of siRNAs? Trends Genet 2004; 20:521-4.
-
(2004)
Trends Genet
, vol.20
, pp. 521-524
-
-
Jackson, A.L.1
Linsley, P.S.2
-
9
-
-
33646188259
-
3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
-
Birmingham A, Anderson EM, Reynolds A, Ilsley-Tyree D, Leake D, Fedorov Y, Baskerville S, Maksimova E, Robinson K, Karpilow J, Marshall WS, Khvorova A. 3' UTR seed matches, but not overall identity, are associated with RNAi off-targets. Nat Methods 2006; 3:199-204.
-
(2006)
Nat Methods
, vol.3
, pp. 199-204
-
-
Birmingham, A.1
Anderson, E.M.2
Reynolds, A.3
Ilsley-Tyree, D.4
Leake, D.5
Fedorov, Y.6
Baskerville, S.7
Maksimova, E.8
Robinson, K.9
Karpilow, J.10
Marshall, W.S.11
Khvorova, A.12
-
10
-
-
17844387370
-
A computational study of off-target effects of RNA interference
-
(Print 2005)
-
Qiu S, Adema CM, Lane T. A computational study of off-target effects of RNA interference. Nucleic Acids Res 2005; 33:1834-47, (Print 2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1834-1847
-
-
Qiu, S.1
Adema, C.M.2
Lane, T.3
-
11
-
-
23144441141
-
E-RNAi: A web application to design optimized RNAi constructs
-
Arziman Z, Horn T, Boutros M. E-RNAi: A web application to design optimized RNAi constructs. Nucleic Acids Res 2005; 33:W582-8.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Arziman, Z.1
Horn, T.2
Boutros, M.3
-
12
-
-
33846007585
-
Minimizing off-target effects by using diced siRNAs for RNA interference
-
Myers JW, Chi JT, Gong DE, Sm O, Brown P, Ferrell Jr JE. Minimizing off-target effects by using diced siRNAs for RNA interference. J RNAi and Gene Silencing 2006; 2:181-94.
-
(2006)
J RNAi and Gene Silencing
, vol.2
, pp. 181-194
-
-
Myers, J.W.1
Chi, J.T.2
Gong, D.E.3
Sm, O.4
Brown, P.5
Ferrell Jr., J.E.6
-
13
-
-
0035863097
-
RNA interference is mediated by 21-and 22-nucleotide RNAs
-
Elbashir SM, Lendeckel W, Tuschl T. RNA interference is mediated by 21-and 22-nucleotide RNAs. Genes Dev 2001; 15:188-200.
-
(2001)
Genes Dev
, vol.15
, pp. 188-200
-
-
Elbashir, S.M.1
Lendeckel, W.2
Tuschl, T.3
-
14
-
-
14644393684
-
Perspective: Machines for RNAi
-
Tomari Y, Zamore PD. Perspective: Machines for RNAi. Genes Dev 2005; 19:517-29.
-
(2005)
Genes Dev
, vol.19
, pp. 517-529
-
-
Tomari, Y.1
Zamore, P.D.2
-
15
-
-
0021926007
-
opa: A novel family of transcribed repeats shared by the Notch locus and other developmentally regulated loci in D. melanogaster
-
Wharton KA, Yedvobnick B, Finnerty VG, Artavanis-Tsakonas S. opa: A novel family of transcribed repeats shared by the Notch locus and other developmentally regulated loci in D. melanogaster. Cell 1985; 40:55-62.
-
(1985)
Cell
, vol.40
, pp. 55-62
-
-
Wharton, K.A.1
Yedvobnick, B.2
Finnerty, V.G.3
Artavanis-Tsakonas, S.4
-
16
-
-
33646187810
-
High-throughput RNAi screening in cultured cells: A user's guide
-
Echeverri CJ, Perrimon N. High-throughput RNAi screening in cultured cells: A user's guide. Nat Rev Genet 2006; 7:373-84.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 373-384
-
-
Echeverri, C.J.1
Perrimon, N.2
-
17
-
-
33749023011
-
Minimizing the risk of reporting false positives in large-scale RNAi screens
-
Echeverri CJ, Beachy PA, Baum B, Boutros M, Buchholz F, Chanda SK, Downward J, Ellenberg J, Fraser AG, Hacohen N, Hahn WC, Jackson AL, Kiger A, Linsley PS, Lum L, Ma Y, Mathey-Prevot B, Root DE, Sabatini DM, Taipale J, Perrimon N, Bernards R. Minimizing the risk of reporting false positives in large-scale RNAi screens. Nat Methods 2006; 3:777-9.
-
(2006)
Nat Methods
, vol.3
, pp. 777-779
-
-
Echeverri, C.J.1
Beachy, P.A.2
Baum, B.3
Boutros, M.4
Buchholz, F.5
Chanda, S.K.6
Downward, J.7
Ellenberg, J.8
Fraser, A.G.9
Hacohen, N.10
Hahn, W.C.11
Jackson, A.L.12
Kiger, A.13
Linsley, P.S.14
Lum, L.15
Ma, Y.16
Mathey-Prevot, B.17
Root, D.E.18
Sabatini, D.M.19
Taipale, J.20
Perrimon, N.21
Bernards, R.22
more..
-
18
-
-
3142698381
-
Neurogenic phenotypes induced by RNA interference with bHLH genes of the Enhancer of split complex of Drosophila melanogaster
-
Nagel AC, Maier D, Krauss S, Mezger M, Preiss A. Neurogenic phenotypes induced by RNA interference with bHLH genes of the Enhancer of split complex of Drosophila melanogaster. Genesis 2004; 39:105-14.
-
(2004)
Genesis
, vol.39
, pp. 105-114
-
-
Nagel, A.C.1
Maier, D.2
Krauss, S.3
Mezger, M.4
Preiss, A.5
-
19
-
-
0842309871
-
Genome-wide RNAi analysis of growth and viability in Drosophila cells
-
Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Consortium HF, Paro R, Perrimon N. Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 2004; 303:832-5.
-
(2004)
Science
, vol.303
, pp. 832-835
-
-
Boutros, M.1
Kiger, A.A.2
Armknecht, S.3
Kerr, K.4
Hild, M.5
Koch, B.6
Haas, S.A.7
Consortium, H.F.8
Paro, R.9
Perrimon, N.10
-
20
-
-
9244220604
-
Genes required for Drosophila nervous system development identified by RNA interference
-
(Epub 2004 Nov 8)
-
Ivanov AI, Rovescalli AC, Pozzi P, Yoo S, Mozer B, Li HP, Yu SH, Higashida H, Guo V, Spencer M, Nirenberg M. Genes required for Drosophila nervous system development identified by RNA interference. Proc Natl Acad Sci USA 2004; 101:16216-21, (Epub 2004 Nov 8).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 16216-16221
-
-
Ivanov, A.I.1
Rovescalli, A.C.2
Pozzi, P.3
Yoo, S.4
Mozer, B.5
Li, H.P.6
Yu, S.H.7
Higashida, H.8
Guo, V.9
Spencer, M.10
Nirenberg, M.11
-
21
-
-
0037470952
-
Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells
-
Lum L, Yao S, Mozer B, Rovescalli A, Von Kessler D, Nirenberg M, Beachy PA. Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells. Science 2003; 299:2039-45.
-
(2003)
Science
, vol.299
, pp. 2039-2045
-
-
Lum, L.1
Yao, S.2
Mozer, B.3
Rovescalli, A.4
von Kessler, D.5
Nirenberg, M.6
Beachy, P.A.7
-
22
-
-
33644503868
-
Identification of pathways regulating cell size and cell-cycle progression by RNAi
-
Bjorklund M, Taipale M, Varjosalo M, Saharinen J, Lahdenpera J, Taipale J. Identification of pathways regulating cell size and cell-cycle progression by RNAi. Nature 2006; 439:1009-13.
-
(2006)
Nature
, vol.439
, pp. 1009-1013
-
-
Bjorklund, M.1
Taipale, M.2
Varjosalo, M.3
Saharinen, J.4
Lahdenpera, J.5
Taipale, J.6
|