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Volumn 75, Issue 3, 2004, Pages 363-375

Signatures of selection and gene conversion associated with human color vision variation

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OPSIN;

EID: 4143144168     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/423287     Document Type: Article
Times cited : (70)

References (70)
  • 1
    • 0032953881 scopus 로고    scopus 로고
    • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
    • Akashi H (1999) Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 151:221-238
    • (1999) Genetics , vol.151 , pp. 221-238
    • Akashi, H.1
  • 2
    • 0030903283 scopus 로고    scopus 로고
    • Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
    • Akashi H, Schaeffer SW (1997) Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146:295-307
    • (1997) Genetics , vol.146 , pp. 295-307
    • Akashi, H.1    Schaeffer, S.W.2
  • 4
    • 0028289475 scopus 로고
    • Molecular determinants of human red/green color discrimination
    • Asenjo AB, Rim J, Oprian DD (1994) Molecular determinants of human red/green color discrimination. Neuron 12:1131-1138
    • (1994) Neuron , vol.12 , pp. 1131-1138
    • Asenjo, A.B.1    Rim, J.2    Oprian, D.D.3
  • 6
    • 0038181021 scopus 로고    scopus 로고
    • Estimates of L:M cone ratio from ERG flicker photometry and genetics
    • Carroll J, Neitz J, Neitz M (2002) Estimates of L:M cone ratio from ERG flicker photometry and genetics. J Vis 2:531-542
    • (2002) J Vis , vol.2 , pp. 531-542
    • Carroll, J.1    Neitz, J.2    Neitz, M.3
  • 7
    • 0038392950 scopus 로고    scopus 로고
    • Finding genes underlying risk of complex disease by linkage disequilibrium mapping
    • Clark AG (2003) Finding genes underlying risk of complex disease by linkage disequilibrium mapping. Curr Opin Genet Dev 13:296-302
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 296-302
    • Clark, A.G.1
  • 11
    • 0035868699 scopus 로고    scopus 로고
    • Ecological importance of trichromatic vision to primates
    • Dominy NJ, Lucas PW (2001) Ecological importance of trichromatic vision to primates. Nature 410:363-366
    • (2001) Nature , vol.410 , pp. 363-366
    • Dominy, N.J.1    Lucas, P.W.2
  • 12
    • 0034924997 scopus 로고    scopus 로고
    • Positive and negative selection on the human genome
    • Fay JC, Wyckoff GJ, Wu C-I (2001) Positive and negative selection on the human genome. Genetics 158:1227-1234
    • (2001) Genetics , vol.158 , pp. 1227-1234
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.-I.3
  • 13
    • 0034835229 scopus 로고    scopus 로고
    • Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
    • Frisse L, Hudson RR, Bartoszewicz A, Wall JD, Donfack J, Di Rienzo A (2001) Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. Am J Hum Genet 69:831-843
    • (2001) Am J Hum Genet , vol.69 , pp. 831-843
    • Frisse, L.1    Hudson, R.R.2    Bartoszewicz, A.3    Wall, J.D.4    Donfack, J.5    Di Rienzo, A.6
  • 14
    • 0042785584 scopus 로고    scopus 로고
    • Perspective: Detecting adaptive molecular polymorphism: Lessons from the MHC
    • Garrigan D, Hedrick PW (2003) Perspective: detecting adaptive molecular polymorphism: lessons from the MHC. Evolution 57:1707-1722
    • (2003) Evolution , vol.57 , pp. 1707-1722
    • Garrigan, D.1    Hedrick, P.W.2
  • 15
    • 0032932046 scopus 로고    scopus 로고
    • Position of a 'green-red' hybrid gene in the visual pigment array determines colour-vision phenotype
    • Hayashi T, Motulsky AG, Deeb SS (1999) Position of a 'green-red' hybrid gene in the visual pigment array determines colour-vision phenotype. Nat Genet 22:90-93
    • (1999) Nat Genet , vol.22 , pp. 90-93
    • Hayashi, T.1    Motulsky, A.G.2    Deeb, S.S.3
  • 16
    • 0033886350 scopus 로고    scopus 로고
    • A new statistic for detecting genetic differentiation
    • Hudson RR (2000) A new statistic for detecting genetic differentiation. Genetics 155:2011-2014
    • (2000) Genetics , vol.155 , pp. 2011-2014
    • Hudson, R.R.1
  • 17
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • - (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338
    • (2002) Bioinformatics , vol.18 , pp. 337-338
  • 18
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • - (2001) Two-locus sampling distributions and their application. Genetics 159:1805-1817
    • (2001) Genetics , vol.159 , pp. 1805-1817
  • 19
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-159
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3
  • 20
    • 0035989438 scopus 로고    scopus 로고
    • A method for estimating the mutation, gene conversion and recombination parameters in small multigene families
    • Innan H (2002) A method for estimating the mutation, gene conversion and recombination parameters in small multigene families. Genetics 161:865-872
    • (2002) Genetics , vol.161 , pp. 865-872
    • Innan, H.1
  • 21
    • 0041305918 scopus 로고    scopus 로고
    • A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes
    • - (2003a) A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes. Proc Natl Acad Sci USA 100:8793-8798
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8793-8798
  • 22
    • 0037297697 scopus 로고    scopus 로고
    • The coalescent and infinite-site model of a small multigene family
    • - (2003b) The coalescent and infinite-site model of a small multigene family. Genetics 163:803-810
    • (2003) Genetics , vol.163 , pp. 803-810
  • 23
    • 0035376258 scopus 로고    scopus 로고
    • Richer color experience in observers with multiple photopigment opsin genes
    • Jameson KA, Highnote SM, Wasserman LM (2001) Richer color experience in observers with multiple photopigment opsin genes. Psychon Bull Rev 8:244-261
    • (2001) Psychon Bull Rev , vol.8 , pp. 244-261
    • Jameson, K.A.1    Highnote, S.M.2    Wasserman, L.M.3
  • 24
    • 0025166002 scopus 로고
    • Molecular genetics of X chromosome-linked color vision among populations of African and Japanese ancestry: High frequency of a shortened red pigment gene among Afro-Americans
    • Jorgensen AL, Deeb SS, Motulsky AG (1990) Molecular genetics of X chromosome-linked color vision among populations of African and Japanese ancestry: high frequency of a shortened red pigment gene among Afro-Americans. Proc Natl Acad Sci USA 87:6512-6516
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 6512-6516
    • Jorgensen, A.L.1    Deeb, S.S.2    Motulsky, A.G.3
  • 25
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
    • Li N, Stephens M (2003) Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165:2213-2233
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 27
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 28
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • McVean G, Awadalla P, Fearnhead P (2002) A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160:1231-1241
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 29
    • 0026602578 scopus 로고
    • Absorption spectra of human cone pigments
    • Merbs SL, Nathans J (1992) Absorption spectra of human cone pigments. Nature 356:433-435
    • (1992) Nature , vol.356 , pp. 433-435
    • Merbs, S.L.1    Nathans, J.2
  • 30
    • 0021191397 scopus 로고
    • Variations of color-vision in a New World primate can be explained by polymorphism of retinal photopigments
    • Mollon JD, Bowmaker JK, Jacobs GH (1984) Variations of color-vision in a New World primate can be explained by polymorphism of retinal photopigments. Proc R Soc Lond B Biol Sci 222:373-399
    • (1984) Proc R Soc Lond B Biol Sci , vol.222 , pp. 373-399
    • Mollon, J.D.1    Bowmaker, J.K.2    Jacobs, G.H.3
  • 31
    • 0035451450 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms and recombination rate in humans
    • Nachman MW (2001) Single nucleotide polymorphisms and recombination rate in humans. Trends Genet 17:481-485
    • (2001) Trends Genet , vol.17 , pp. 481-485
    • Nachman, M.W.1
  • 32
    • 0030011347 scopus 로고    scopus 로고
    • Nonneutral mitochondrial DNA variation in humans and chimpanzees
    • Nachman MW, Brown WM, Stoneking M, Aquadro CF (1996) Nonneutral mitochondrial DNA variation in humans and chimpanzees. Genetics 142:953-963
    • (1996) Genetics , vol.142 , pp. 953-963
    • Nachman, M.W.1    Brown, W.M.2    Stoneking, M.3    Aquadro, C.F.4
  • 33
    • 0022695490 scopus 로고
    • Molecular genetics of human color vision: The genes encoding blue, green, and red pigments
    • Nathans J, Thomas D, Hogness DS (1986) Molecular genetics of human color vision: the genes encoding blue, green, and red pigments. Science 232:193-202
    • (1986) Science , vol.232 , pp. 193-202
    • Nathans, J.1    Thomas, D.2    Hogness, D.S.3
  • 34
    • 0035989435 scopus 로고    scopus 로고
    • The effects of multilocus balancing selection on neutral variability
    • Navarro A, Barton NH (2002) The effects of multilocus balancing selection on neutral variability. Genetics 161:849-863
    • (2002) Genetics , vol.161 , pp. 849-863
    • Navarro, A.1    Barton, N.H.2
  • 35
    • 0033306298 scopus 로고    scopus 로고
    • Trichromatic color vision with only two spectrally distinct photopigments
    • Neitz J, Neitz M, He JC, Shevell SK (1999) Trichromatic color vision with only two spectrally distinct photopigments. Nat Neurosci 2:884-888
    • (1999) Nat Neurosci , vol.2 , pp. 884-888
    • Neitz, J.1    Neitz, M.2    He, J.C.3    Shevell, S.K.4
  • 36
    • 0032867365 scopus 로고    scopus 로고
    • The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory
    • Nielsen R, Weinreich DM (1999) The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory. Genetics 153:497-506
    • (1999) Genetics , vol.153 , pp. 497-506
    • Nielsen, R.1    Weinreich, D.M.2
  • 37
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • Ohta T (1992) The nearly neutral theory of molecular evolution. Annu Rev Ecol Syst 23:263-286
    • (1992) Annu Rev Ecol Syst , vol.23 , pp. 263-286
    • Ohta, T.1
  • 38
    • 0035345013 scopus 로고    scopus 로고
    • Meiotic recombination hot spots and cold spots
    • Petes TD (2001) Meiotic recombination hot spots and cold spots. Nat Rev Genet 2:360-369
    • (2001) Nat Rev Genet , vol.2 , pp. 360-369
    • Petes, T.D.1
  • 40
    • 0035027837 scopus 로고    scopus 로고
    • Why is there so little intragenic linkage disequilibrium in humans?
    • Przeworski M, Wall JD (2001) Why is there so little intragenic linkage disequilibrium in humans? Genet Res 77:143-151
    • (2001) Genet Res , vol.77 , pp. 143-151
    • Przeworski, M.1    Wall, J.D.2
  • 41
    • 1942511512 scopus 로고    scopus 로고
    • Insights into recombination from patterns of linkage disequilibrium in humans
    • Ptak SE, Voelpel K, Przeworski M (2004) Insights into recombination from patterns of linkage disequilibrium in humans. Genetics 167:387-397
    • (2004) Genetics , vol.167 , pp. 387-397
    • Ptak, S.E.1    Voelpel, K.2    Przeworski, M.3
  • 44
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas J, Rozas R (1999) DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 46
    • 0036963687 scopus 로고    scopus 로고
    • Nucleotide variability at G6PD and the signature of malarial selection in humans
    • Saunders MA, Hammer MF, Nachman MW (2002) Nucleotide variability at G6PD and the signature of malarial selection in humans. Genetics 162:1849-1861
    • (2002) Genetics , vol.162 , pp. 1849-1861
    • Saunders, M.A.1    Hammer, M.F.2    Nachman, M.W.3
  • 47
    • 0032402112 scopus 로고    scopus 로고
    • Red, green, and red-green hybrid pigments in the human retina: Correlations between deduced protein sequences and psychophysically measured spectral sensitivities
    • Sharpe LT, Stockman A, Jagle H, Knau H, Klausen G, Reimer A, Nathans J (1998) Red, green, and red-green hybrid pigments in the human retina: correlations between deduced protein sequences and psychophysically measured spectral sensitivities. J Neurosci 18:10053-10069
    • (1998) J Neurosci , vol.18 , pp. 10053-10069
    • Sharpe, L.T.1    Stockman, A.2    Jagle, H.3    Knau, H.4    Klausen, G.5    Reimer, A.6    Nathans, J.7
  • 48
    • 0002128296 scopus 로고    scopus 로고
    • Opsin genes, cone photopigments, color vision, and color blindness
    • Gegenfurtner KR, Sharpe LT (eds). Cambridge University Press, New York
    • Sharpe LT, Stockman A, Jagle H, Nathans J (1999) Opsin genes, cone photopigments, color vision, and color blindness. In: Gegenfurtner KR, Sharpe LT (eds) Color vision: from genes to perception. Cambridge University Press, New York, pp 3-51
    • (1999) Color Vision: From Genes to Perception , pp. 3-51
    • Sharpe, L.T.1    Stockman, A.2    Jagle, H.3    Nathans, J.4
  • 49
    • 0028198166 scopus 로고
    • Intronic gene conversion in the evolution of human X-linked color vision genes
    • Shyue SK, Li L, Chang BH, Li WH (1994) Intronic gene conversion in the evolution of human X-linked color vision genes. Mol Biol Evol 11:548-551
    • (1994) Mol Biol Evol , vol.11 , pp. 548-551
    • Shyue, S.K.1    Li, L.2    Chang, B.H.3    Li, W.H.4
  • 50
    • 0031669769 scopus 로고    scopus 로고
    • L-cone pigment genes expressed in normal colour vision
    • Sjoberg SA, Neitz M, Balding SD, Neitz J (1998) L-cone pigment genes expressed in normal colour vision. Vision Res 38:3213-3219
    • (1998) Vision Res , vol.38 , pp. 3213-3219
    • Sjoberg, S.A.1    Neitz, M.2    Balding, S.D.3    Neitz, J.4
  • 51
    • 0034089033 scopus 로고    scopus 로고
    • Balancing selection at closely linked, over-dominant loci in a finite population
    • Slatkin M (2000) Balancing selection at closely linked, over-dominant loci in a finite population. Genetics 154:1367-1378
    • (2000) Genetics , vol.154 , pp. 1367-1378
    • Slatkin, M.1
  • 53
    • 0038781903 scopus 로고    scopus 로고
    • Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
    • Subramanian S, Kumar S (2003) Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes. Genome Res 13:838-844
    • (2003) Genome Res , vol.13 , pp. 838-844
    • Subramanian, S.1    Kumar, S.2
  • 54
    • 0037376562 scopus 로고    scopus 로고
    • Evolution and selection of trichromatic vision in primates
    • Surridge AK, Osorio D, Mundy NI (2003) Evolution and selection of trichromatic vision in primates. Trends Ecol Evol 18:198-205
    • (2003) Trends Ecol Evol , vol.18 , pp. 198-205
    • Surridge, A.K.1    Osorio, D.2    Mundy, N.I.3
  • 55
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 56
    • 0026711015 scopus 로고
    • Polymorphism and balancing selection at major histocompatibility complex loci
    • Takahata N, Satta Y, Klein J (1992) Polymorphism and balancing selection at major histocompatibility complex loci. Genetics 130:925-938
    • (1992) Genetics , vol.130 , pp. 925-938
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 58
    • 0242524432 scopus 로고    scopus 로고
    • Patterns of human genetic diversity: Implications for human evolutionary history and disease
    • Tishkoff SA, Verrelli BC (2003a) Patterns of human genetic diversity: implications for human evolutionary history and disease. Annu Rev Genomics Hum Genet 4:293-340
    • (2003) Annu Rev Genomics Hum Genet , vol.4 , pp. 293-340
    • Tishkoff, S.A.1    Verrelli, B.C.2
  • 59
    • 0344585289 scopus 로고    scopus 로고
    • Role of evolutionary history on haplotype block structure in the human genome: Implications for disease mapping
    • - (2003b) Role of evolutionary history on haplotype block structure in the human genome: implications for disease mapping. Curr Opin Genet Dev 13:569-575
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 569-575
  • 60
    • 0036323319 scopus 로고    scopus 로고
    • Genetic analysis of African populations: Human evolution and complex disease
    • Tishkoff SA, Williams SM (2002) Genetic analysis of African populations: human evolution and complex disease. Nat Rev Genet 3:611-621
    • (2002) Nat Rev Genet , vol.3 , pp. 611-621
    • Tishkoff, S.A.1    Williams, S.M.2
  • 62
    • 0842267625 scopus 로고    scopus 로고
    • Close look at gene conversion hot spots
    • Wall JD (2004) Close look at gene conversion hot spots. Nat Genet 36:114-115
    • (2004) Nat Genet , vol.36 , pp. 114-115
    • Wall, J.D.1
  • 63
    • 0346101497 scopus 로고    scopus 로고
    • Comparative linkage-disequilibrium analysis of the β-globin hotspot in primates
    • Wall JD, Frisse LA, Hudson RR, Di Rienzo A (2003) Comparative linkage-disequilibrium analysis of the β-globin hotspot in primates. Am J Hum Genet 73:1330-1340
    • (2003) Am J Hum Genet , vol.73 , pp. 1330-1340
    • Wall, J.D.1    Frisse, L.A.2    Hudson, R.R.3    Di Rienzo, A.4
  • 64
    • 0043267974 scopus 로고    scopus 로고
    • Haplotype blocks and linkage disequilibrium in the human genome
    • Wall JD, Pritchard JK (2003) Haplotype blocks and linkage disequilibrium in the human genome. Nat Rev Genet 4:587-597
    • (2003) Nat Rev Genet , vol.4 , pp. 587-597
    • Wall, J.D.1    Pritchard, J.K.2
  • 65
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetic models without recombination
    • Watterson GA (1975) On the number of segregating sites in genetic models without recombination. Theor Popul Biol 7:256-276
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 66
    • 0027204081 scopus 로고
    • Haplotype diversity in the human red and green opsin genes: Evidence for frequent sequence exchange in exon 3
    • Winderickx J, Battisti L, Hibiya Y, Motulsky AG, Deeb SS (1993) Haplotype diversity in the human red and green opsin genes: evidence for frequent sequence exchange in exon 3. Hum Mol Genet 2:1413-1421
    • (1993) Hum Mol Genet , vol.2 , pp. 1413-1421
    • Winderickx, J.1    Battisti, L.2    Hibiya, Y.3    Motulsky, A.G.4    Deeb, S.S.5
  • 69
    • 0034857787 scopus 로고    scopus 로고
    • The molecular genetics and evolution of red and green color vision in vertebrates
    • Yokoyama S, Radlwimmer FB (2001) The molecular genetics and evolution of red and green color vision in vertebrates. Genetics 158:1697-1710
    • (2001) Genetics , vol.158 , pp. 1697-1710
    • Yokoyama, S.1    Radlwimmer, F.B.2
  • 70
    • 0030013563 scopus 로고    scopus 로고
    • Gene conversion and natural selection in the evolution of X-linked color vision genes in higher primates
    • Zhou YH, Li WH (1996) Gene conversion and natural selection in the evolution of X-linked color vision genes in higher primates. Mol Biol Evol 13:780-783
    • (1996) Mol Biol Evol , vol.13 , pp. 780-783
    • Zhou, Y.H.1    Li, W.H.2


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