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ChemBioChem

Volumn 5, Issue 2, 2004, Pages 224-230

Modulating functional loop movements: The role of highly conserved residues in the correlated loop motions

(2) Gunasekaran, Kannan a Nussinov, Ruth a,b

a SAIC FREDERICK INC (United States)

b TEL AVIV UNIVERSITY (Israel)

Author keywords

Conformation analysis; Correlated motions; Function design; Ligand binding mechanism; Proteins; Transferases

Indexed keywords

AMINO ACID DERIVATIVE; BETA 1,4 GALACTOSYLTRANSFERASE; GALACTOSYLTRANSFERASE; PROTEIN DERIVATIVE; SOLVENT; UNCLASSIFIED DRUG;

ADDITION REACTION; BINDING AFFINITY; CONFERENCE PAPER; CONFORMATIONAL TRANSITION; CORRELATION ANALYSIS; ENZYME ACTIVITY; ENZYME SUBSTRATE; GENETIC CONSERVATION; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; MOLECULAR INTERACTION; MOLECULAR MECHANICS; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN DETERMINATION; REACTION ANALYSIS; SEQUENCE ANALYSIS; SIMULATION;

AMINO ACID SEQUENCE; CONSERVED SEQUENCE; CRYSTALLOGRAPHY, X-RAY; GALACTOSYLTRANSFERASES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOVEMENT; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT;

EID: 4143085329 PISSN: 14394227 EISSN: None Source Type: Journal
DOI: 10.1002/cbic.200300732 Document Type: Conference Paper

Times cited : (19)

References (36)

1
- 0031922657
- a) J. M. Yon, D. Perahia, C. Ghelis, Biochimie 1998, 80, 33-42;
- (1998) Biochimie , vol.80 , pp. 33-42
- Yon, J.M.¹ Perahia, D.² Ghelis, C.³

2
- 0037154793
- b) J. J. Falke, Science 2002, 295, 1480-1481;
- (2002) Science , vol.295 , pp. 1480-1481
- Falke, J.J.¹

3
- 0021314461
- c) W. S. Bennett, R. Huber, CRC Crit. Rev. Biochem. 1984, 15, 291-384;
- (1984) CRC Crit. Rev. Biochem. , vol.15 , pp. 291-384
- Bennett, W.S.¹ Huber, R.²

4
- 0037008011
- d) G. G. Hammes, Biochemistry 2002, 41, 8221-8228;
- (2002) Biochemistry , vol.41 , pp. 8221-8228
- Hammes, G.G.¹

5
- 0015528157
- e) G. Weber, Biochemistry 1972, 11, 864-878.
- (1972) Biochemistry , vol.11 , pp. 864-878
- Weber, G.¹

6
- 0025015392
- D. Joseph, G. A. Petsko, M. Karplus, Science 1990, 249, 1425-1428.
- (1990) Science , vol.249 , pp. 1425-1428
- Joseph, D.¹ Petsko, G.A.² Karplus, M.³

7
- 0034760077
- a) A.J. Wand, Nat. Struct. Biol. 2001, 8, 926-931;
- (2001) Nat. Struct. Biol. , vol.8 , pp. 926-931
- Wand, A.J.¹

8
- 0000076530
- (Eds.: E.E. Sterchi, W. Stocker), Springer, Heidelberg
- b) A. Fontana, P. Polverino de Laureto, V. De Filippis, E. Scaramella, M. Zambonin in Proteolytic Enzymes: Tools and Targets (Eds.: E.E. Sterchi, W. Stocker), Springer, Heidelberg, 1999, pp. 253-280;
- (1999) Proteolytic Enzymes: Tools and Targets , pp. 253-280
- Fontana, A.¹ Polverino De Laureto, P.² De Filippis, V.³ Scaramella, E.⁴ Zambonin, M.⁵

9
- 0033117830
- c) S. Doniach, P. Eastman, Curr. Opin. Struct. Biol. 1999, 9, 157-163;
- (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 157-163
- Doniach, S.¹ Eastman, P.²

10
- 0036725277
- d) M. Karplus, J. A. McCammon, Nat. Struct. Biol. 2002, 9, 646-652;
- (2002) Nat. Struct. Biol. , vol.9 , pp. 646-652
- Karplus, M.¹ McCammon, J.A.²

11
- 0036536428
- e) T. Hansson, C. Oostenbrink, W. F. van Gunsteren, Curr. Opin. Struct. Biol. 2002, 12, 190-196.
- (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 190-196
- Hansson, T.¹ Oostenbrink, C.² Van Gunsteren, W.F.³

12
- 0034813214
- a) T. A. Fritz, D. Tondi, J. S. Finer-Moore, M. P. Costi, R. M. Stroud, Chem. Biol. 2001, 8, 981-995;
- (2001) Chem. Biol. , vol.8 , pp. 981-995
- Fritz, T.A.¹ Tondi, D.² Finer-Moore, J.S.³ Costi, M.P.⁴ Stroud, R.M.⁵

13
- 0037666888
- b) S. J. Teague, Nat. Rey. Drug Discovery 2003, 2, 527-541.
- (2003) Nat. Rey. Drug Discovery , vol.2 , pp. 527-541
- Teague, S.J.¹

14
- 0028921302
- a) L. K. Nicholson, T. Yamazaki, D. A. Torchia, S. Grzesiek, A. Bax, S. J. Stahl, J. D. Kaufman, P. T. Wingfield, P. Y. Lam, P. K. Jadhav, C. N. Hodge, P. J. Domaille, C.-H. Chang. Nat. Struct. Biol. 1995, 2, 274-280;
- (1995) Nat. Struct. Biol. , vol.2 , pp. 274-280
- Nicholson, L.K.¹ Yamazaki, T.² Torchia, D.A.³ Grzesiek, S.⁴ Bax, A.⁵ Stahl, S.J.⁶ Kaufman, J.D.⁷ Wingfield, P.T.⁸ Lam, P.Y.⁹ Jadhav, P.K.¹⁰ Hodge, C.N.¹¹ Domaille, P.J.¹² Chang, C.-H.¹³

15
- 0024961746
- b) L. Lebioda, B. Stec, J. M. Brewer, J. Biol. Chem. 1989, 264, 3685-3693;
- (1989) J. Biol. Chem. , vol.264 , pp. 3685-3693
- Lebioda, L.¹ Stec, B.² Brewer, J.M.³

16
- 0025804778
- c) L. Lebioda, B. Stec, Biochemistry 1991, 30, 2817-2822;
- (1991) Biochemistry , vol.30 , pp. 2817-2822
- Lebioda, L.¹ Stec, B.²

17
- 0028223392
- d) Z. S. Derewenda, Adv. Protein Chem. 1994, 45, 1-52;
- (1994) Adv. Protein Chem. , vol.45 , pp. 1-52
- Derewenda, Z.S.¹

18
- 0036290392
- e) S. Zgiby, A. R. Plater, M. A. Bates, G. J. Thomson, A. Berry, J. Mol. Biol. 2002, 315, 131-140;
- (2002) J. Mol. Biol. , vol.315 , pp. 131-140
- Zgiby, S.¹ Plater, A.R.² Bates, M.A.³ Thomson, G.J.⁴ Berry, A.⁵

19
- 0037013143
- f) M. Huse, J. Kuriyan Cell 2002, 109, 275-282;
- (2002) Cell , vol.109 , pp. 275-282
- Huse, M.¹ Kuriyan, J.²

20
- 0034602332
- g) Y. Nagao, S. Kitada, K. Kojima, H. Toh, S. Kuhara, T. Ogishima, A. Ito, J. Biol. Chem. 2000, 275, 34552-34556.
- (2000) J. Biol. Chem. , vol.275 , pp. 34552-34556
- Nagao, Y.¹ Kitada, S.² Kojima, K.³ Toh, H.⁴ Kuhara, S.⁵ Ogishima, T.⁶ Ito, A.⁷

21
- 0035967864
- a) B. Ramakrishnan, P. K. Qasba, J. Mol. Biol. 2001, 310, 205-218;
- (2001) J. Mol. Biol. , vol.310 , pp. 205-218
- Ramakrishnan, B.¹ Qasba, P.K.²

22
- 0036019552
- b) B. Ramakrishnan, P. V. Balaji, P. K. Qasba, J. Mol. Biol. 2002, 318, 491-502;
- (2002) J. Mol. Biol. , vol.318 , pp. 491-502
- Ramakrishnan, B.¹ Balaji, P.V.² Qasba, P.K.³

23
- 0033168184
- c) L. N. Gastinel, C. Cambillau, Y. Bourne, EMBO J. 1999, 18, 3546-3557;
- (1999) EMBO J. , vol.18 , pp. 3546-3557
- Gastinel, L.N.¹ Cambillau, C.² Bourne, Y.³

24
- 0043123399
- d) V. Ramasamy, B. Ramakrishnan, E. Boeggeman, P. K. Qasba, J. Mol. Biol. 2003, 331, 1065-1076.
- (2003) J. Mol. Biol. , vol.331 , pp. 1065-1076
- Ramasamy, V.¹ Ramakrishnan, B.² Boeggeman, E.³ Qasba, P.K.⁴

25
- 0037426326
- a) K. Gunasekaran, B. Ma, B. Ramakrishnan, P. K. Qasba, R. Nussinov. Biochemistry 2003, 42, 3674-3687;
- (2003) Biochemistry , vol.42 , pp. 3674-3687
- Gunasekaran, K.¹ Ma, B.² Ramakrishnan, B.³ Qasba, P.K.⁴ Nussinov, R.⁵

26
- 0043237705
- b) K. Gunasekaran, B. Ma, R. Nussinov, J. Mol. Biol. 2003, 332, 143-159.
- (2003) J. Mol. Biol. , vol.332 , pp. 143-159
- Gunasekaran, K.¹ Ma, B.² Nussinov, R.³

27
- 0033955055
- a) J. L. Radkiewicz, C. L. Brooks III, J. Am. Chem. Soc. 2000, 122, 225-231;
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 225-231
- Radkiewicz, J.L.¹ Brooks III, C.L.²

28
- 0038810233
- b) T. H. Rod, J. L. Radkiewicz, C. L. Brooks III, Proc. Natl. Acad. Sci. USA 2003, 100, 6980-6985;
- (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6980-6985
- Rod, T.H.¹ Radkiewicz, J.L.² Brooks III, C.L.³

29
- 0037022683
- c) P. K. Agarwal, S. R. Billeter, P. T. R. Rajagopalan, S. J. Benkovic, S. Hammes-Schiffer. Proc. Natl. Acad. Sci. USA 2002, 99, 2794-2799.
- (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 2794-2799
- Agarwal, P.K.¹ Billeter, S.R.² Rajagopalan, P.T.R.³ Benkovic, S.J.⁴ Hammes-Schiffer, S.⁵

30
- 0011542799
- A. Bateman, E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall, E. L. Sonnhammer, Nucleic Acids Res. 2002, 30, 276-280.
- (2002) Nucleic Acids Res. , vol.30 , pp. 276-280
- Bateman, A.¹ Birney, E.² Cerruti, L.³ Durbin, R.⁴ Etwiller, L.⁵ Eddy, S.R.⁶ Griffiths-Jones, S.⁷ Howe, K.L.⁸ Marshall, M.⁹ Sonnhammer, E.L.¹⁰

31
- 0037020282
- a) L. Oliveira, A. C. Paiva, G. Vriend. ChemBioChem 2002, 3, 1010-1017;
- (2002) ChemBioChem , vol.3 , pp. 1010-1017
- Oliveira, L.¹ Paiva, A.C.² Vriend, G.³

32
- 0347089152
- in press (published online on Sep. 4, 2003; DOI: 10.1002/prot.10520)
- K. Gunasekaran, A. T. Hagler, L. M. Gierasch. Proteins: Struct. Funct. Genet. 2004, in press (published online on Sep. 4, 2003; DOI: 10.1002/prot.10520; http://www3.interscience.wiley.com/cgi-bin/jhome/36176).
- (2004) Proteins: Struct. Funct. Genet.
- Gunasekaran, K.¹ Hagler, A.T.² Gierasch, L.M.³

33
- 0017411710
- F. C. Bernstein, T. F. Koetzle, G. J. Williams, E. F. Meyer, Jr., M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, M. Tasumi, J. Mol. Biol. 1977, 112, 535-542.
- (1977) J. Mol. Biol. , vol.112 , pp. 535-542
- Bernstein, F.C.¹ Koetzle, T.F.² Williams, G.J.³ Meyer Jr., E.F.⁴ Brice, M.D.⁵ Rodgers, J.R.⁶ Kennard, O.⁷ Shimanouchi, T.⁸ Tasumi, M.⁹

34
- 84986512474
- a) B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, M. Karplus, J. Comput. Chem. 1983, 4, 187-217;
- (1983) J. Comput. Chem. , vol.4 , pp. 187-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, S.⁵ Karplus, M.⁶

35
- 0033135638
- b) T. Lazaridis, M. Karplus. Proteins: Struct. Funct. Genet. 1999, 35, 133-152.
- (1999) Proteins: Struct. Funct. Genet. , vol.35 , pp. 133-152
- Lazaridis, T.¹ Karplus, M.²

36
- 0003769049
- Yale University Press, New Haven
- A. T. Brunger, X-PLOR, 1992, Version 3.1. A system for X-ray crystallography and NMR. Yale University Press, New Haven.
- X-PLOR, 1992, Version 3.1. A System for X-ray Crystallography and NMR
- Brunger, A.T.¹

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