메뉴 건너뛰기




Volumn 8, Issue 12, 2007, Pages

Consistent dissection of the protein interaction network by combining global and local metrics

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN;

EID: 40449109730     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2007-8-12-r271     Document Type: Article
Times cited : (20)

References (39)
  • 1
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • 24541 9843981
    • Eisen MB Spellman PT Brown PO Botstein D Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998 95 14863-14868 24541 9843981
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 4
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • 15550 10655498
    • Ito T Tashiro K Muta S Ozawa R Chiba T Nishizawa M Yamamoto K Kuhara S Sakaki Y et al. Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci USA 2000 97 1143 1147 15550 10655498
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5    Nishizawa, M.6    Yamamoto, K.7    Kuhara, S.8    Sakaki, Y.9
  • 10
    • 33644778778 scopus 로고    scopus 로고
    • A DNA integrity network in the yeast Saccharomyces cerevisiae
    • 16487579
    • Pan X Ye P Yuan DS Wang X Bader JS Boeke JD A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 2006 124 1069-1081 16487579
    • (2006) Cell , vol.124 , pp. 1069-1081
    • Pan, X.1    Ye, P.2    Yuan, D.S.3    Wang, X.4    Bader, J.S.5    Boeke, J.D.6
  • 13
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • 122977 12060727
    • Girvan M Newman ME Community structure in social and biological networks. Proc Natl Acad Sci USA 2002 99 7821-7826 122977 12060727
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.2
  • 16
    • 33751255087 scopus 로고    scopus 로고
    • Evaluation of clustering algorithms for protein-protein interaction networks
    • 1637120 17087821
    • Brohee S van Helden J Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics 2006 7 488 1637120 17087821
    • (2006) BMC Bioinformatics , vol.7 , pp. 488
    • Brohee, S.1    van Helden, J.2
  • 17
    • 37649028224 scopus 로고    scopus 로고
    • Finding and evaluating community structure in networks
    • 026113
    • Newman ME Girvan M Finding and evaluating community structure in networks. Phys Rev 2004 69 026113
    • (2004) Phys Rev , vol.69
    • Newman, M.E.1    Girvan, M.2
  • 20
    • 0035648637 scopus 로고    scopus 로고
    • A Faster Algorithm for Betweenness Centrality
    • Brandes U A Faster Algorithm for Betweenness Centrality. J Mathematical Sociol 2001 25 163-177
    • (2001) J Mathematical Sociol , vol.25 , pp. 163-177
    • Brandes, U.1
  • 21
    • 38049036713 scopus 로고    scopus 로고
    • A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks
    • Yang Q Lonardi S A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks. Int J Data Mining Bioinformatics 2007 1 241-247
    • (2007) Int J Data Mining Bioinformatics , vol.1 , pp. 241-247
    • Yang, Q.1    Lonardi, S.2
  • 22
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • 218723 14517352
    • Spirin V Mirny LA Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 2003 100 12123-12128 218723 14517352.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 23
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • 12000970
    • von Mering C Krause R Snel B Cornell M Oliver SG Fields S Bork P Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002 417 399-403 12000970
    • (2002) Nature , vol.417 , pp. 399-403
    • von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5    Fields, S.6    Bork, P.7
  • 24
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • 404686 12676999
    • Goldberg DS Roth FP Assessing experimentally derived interactions in a small world. Proc Natl Acad Sci USA 2003 100 4372-4376 404686 12676999
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P.2
  • 25
    • 0242268461 scopus 로고    scopus 로고
    • Predicting protein functions from redundancies in large-scale protein interaction networks
    • 240660 14566057
    • Samanta MP Liang S Predicting protein functions from redundancies in large-scale protein interaction networks. Proc Natl Acad Sci USA 2003 100 12579-12583 240660 14566057
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 28
    • 12344269924 scopus 로고    scopus 로고
    • GO: TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • 15297299
    • Boyle EI Weng S Gollub J Jin H Botstein D Cherry JM Sherlock G GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004 20 3710-3715 15297299
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5    Cherry, J.M.6    Sherlock, G.7
  • 29
    • 0033608992 scopus 로고    scopus 로고
    • Bifurcation of the mitotic checkpoint pathway in budding yeast
    • 21804 10220406
    • Li R Bifurcation of the mitotic checkpoint pathway in budding yeast. Proc Natl Acad Sci USA 1999 96 4989-4994 21804 10220406
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4989-4994
    • Li, R.1
  • 30
    • 0037111879 scopus 로고    scopus 로고
    • Requirement of Hos2 histone deacetylase for gene activity in yeast
    • 12434058
    • Wang A Kurdistani SK Grunstein M Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 2002 298 1412-1414 12434058
    • (2002) Science , vol.298 , pp. 1412-1414
    • Wang, A.1    Kurdistani, S.K.2    Grunstein, M.3
  • 31
    • 0032792445 scopus 로고    scopus 로고
    • The ZDS1 and ZDS2 proteins require the Sir3p component of yeast silent chromatin to enhance the stability of short linear centromeric plasmids
    • 10398844
    • Roy N Runge KW The ZDS1 and ZDS2 proteins require the Sir3p component of yeast silent chromatin to enhance the stability of short linear centromeric plasmids. Chromosoma 1999 108 146-161 10398844
    • (1999) Chromosoma , vol.108 , pp. 146-161
    • Roy, N.1    Runge, K.W.2
  • 33
    • 0028023358 scopus 로고
    • Control of the yeast bud-site assembly GTPase Cdc42. Catalysis of guanine nucleotide exchange by Cdc24 and stimulation of GTPase activity by Bem3
    • 8300560
    • Zheng Y Cerione R Bender A Control of the yeast bud-site assembly GTPase Cdc42. Catalysis of guanine nucleotide exchange by Cdc24 and stimulation of GTPase activity by Bem3. J Biol Chem 1994 269 2369-2372 8300560
    • (1994) J Biol Chem , vol.269 , pp. 2369-2372
    • Zheng, Y.1    Cerione, R.2    Bender, A.3
  • 34
    • 0037197886 scopus 로고    scopus 로고
    • The identification of functional modules from the genomic association of genes
    • 122872 11983890
    • Snel B Bork P Huynen MA The identification of functional modules from the genomic association of genes. Proc Natl Acad Sci USA 2002 99 5890-5895 122872 11983890
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 5890-5895
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 35
    • 13844283294 scopus 로고    scopus 로고
    • Physical and functional modularity of the protein network in yeast
    • 16247890
    • Wilhelm T Nasheuer HP Huang S Physical and functional modularity of the protein network in yeast. Mol Cell Proteomics 2003 2 292-298 16247890
    • (2003) Mol Cell Proteomics , vol.2 , pp. 292-298
    • Wilhelm, T.1    Nasheuer, H.P.2    Huang, S.3
  • 37
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • 149346 12525261
    • Bader GD Hogue CW An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003 4 2 149346 12525261
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 38
    • 0038074373 scopus 로고    scopus 로고
    • Topological structure analysis of the protein-protein interaction network in budding yeast
    • 154226 12711690
    • Bu D Zhao Y Cai L Xue H Zhu X Lu H Zhang J Sun S Ling L Zhang N et al. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res 2003 31 2443-2450 154226 12711690
    • (2003) Nucleic Acids Res , vol.31 , pp. 2443-2450
    • Bu, D.1    Zhao, Y.2    Cai, L.3    Xue, H.4    Zhu, X.5    Lu, H.6    Zhang, J.7    Sun, S.8    Ling, L.9    Zhang, N.10
  • 39
    • 33748701649 scopus 로고    scopus 로고
    • Detecting functional modules in the yeast protein-protein interaction network
    • 16837529
    • Chen J Yuan B Detecting functional modules in the yeast protein-protein interaction network. Bioinformatics 2006 22 2283-2290 16837529
    • (2006) Bioinformatics , vol.22 , pp. 2283-2290
    • Chen, J.1    Yuan, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.