-
2
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
10929718
-
Hughes TR Marton MJ Jones AR Roberts CJ Stoughton R Armour CD Bennett HA Coffey E Dai H He YD et al. Functional discovery via a compendium of expression profiles. Cell 2000 102 109-126 10929718
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
-
3
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
11805837
-
Ho Y Gruhler A Heilbut A Bader GD Moore L Adams SL Millar A Taylor P Bennett K Boutilier K et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002 415 180-183 11805837
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
-
4
-
-
0033974688
-
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
-
15550 10655498
-
Ito T Tashiro K Muta S Ozawa R Chiba T Nishizawa M Yamamoto K Kuhara S Sakaki Y et al. Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci USA 2000 97 1143 1147 15550 10655498
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1143-1147
-
-
Ito, T.1
Tashiro, K.2
Muta, S.3
Ozawa, R.4
Chiba, T.5
Nishizawa, M.6
Yamamoto, K.7
Kuhara, S.8
Sakaki, Y.9
-
5
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
16554755
-
Krogan NJ Cagney G Yu H Zhong G Guo X Ignatchenko A Li J Pu S Datta N Tikuisis AP et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006 440 637-643 16554755
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
-
6
-
-
10744227471
-
High-definition macromolecular composition of yeast RNA-processing complexes
-
14759368
-
Krogan NJ Peng WT Cagney G Robinson MD Haw R Zhong G Guo X Zhang X Canadien V Richards DP et al. High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell 2004 13 225-239 14759368
-
(2004)
Mol Cell
, vol.13
, pp. 225-239
-
-
Krogan, N.J.1
Peng, W.T.2
Cagney, G.3
Robinson, M.D.4
Haw, R.5
Zhong, G.6
Guo, X.7
Zhang, X.8
Canadien, V.9
Richards, D.P.10
-
7
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
11805826
-
Gavin AC Bosche M Krause R Grandi P Marzioch M Bauer A Schultz J Rick JM Michon AM Cruciat CM et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002 415 141-147 11805826
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
-
8
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
16429126
-
Gavin AC Aloy P Grandi P Krause R Boesche M Marzioch M Rau C Jensen LJ Bastuck S et al. Dumpelfeld B Proteome survey reveals modularity of the yeast cell machinery. Nature 2006 440 631-636 16429126
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
-
9
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
14764870
-
Tong AH Lesage G Bader GD Ding H Xu H Xin X Young J Berriz GF Brost RL Chang M et al. Global mapping of the yeast genetic interaction network. Science 2004 303 808-813 14764870
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
Xin, X.6
Young, J.7
Berriz, G.F.8
Brost, R.L.9
Chang, M.10
-
10
-
-
33644778778
-
A DNA integrity network in the yeast Saccharomyces cerevisiae
-
16487579
-
Pan X Ye P Yuan DS Wang X Bader JS Boeke JD A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 2006 124 1069-1081 16487579
-
(2006)
Cell
, vol.124
, pp. 1069-1081
-
-
Pan, X.1
Ye, P.2
Yuan, D.S.3
Wang, X.4
Bader, J.S.5
Boeke, J.D.6
-
11
-
-
26844489762
-
Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile
-
16269340
-
Schuldiner M Collins SR Thompson NJ Denic V Bhamidipati A Punna T Ihmels J Andrews B Boone C Greenblatt JF et al. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell 2005 123 507-519 16269340
-
(2005)
Cell
, vol.123
, pp. 507-519
-
-
Schuldiner, M.1
Collins, S.R.2
Thompson, N.J.3
Denic, V.4
Bhamidipati, A.5
Punna, T.6
Ihmels, J.7
Andrews, B.8
Boone, C.9
Greenblatt, J.F.10
-
13
-
-
0037062448
-
Community structure in social and biological networks
-
122977 12060727
-
Girvan M Newman ME Community structure in social and biological networks. Proc Natl Acad Sci USA 2002 99 7821-7826 122977 12060727
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.E.2
-
16
-
-
33751255087
-
Evaluation of clustering algorithms for protein-protein interaction networks
-
1637120 17087821
-
Brohee S van Helden J Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics 2006 7 488 1637120 17087821
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 488
-
-
Brohee, S.1
van Helden, J.2
-
17
-
-
37649028224
-
Finding and evaluating community structure in networks
-
026113
-
Newman ME Girvan M Finding and evaluating community structure in networks. Phys Rev 2004 69 026113
-
(2004)
Phys Rev
, vol.69
-
-
Newman, M.E.1
Girvan, M.2
-
18
-
-
9144242935
-
MIPS: Analysis and annotation of proteins from whole genomes
-
308826 14681354 32 Database
-
Mewes HW Amid C Arnold R Frishman D Guldener U Mannhaupt G Munsterkotter M Pagel P Strack N Stumpflen V MIPS: Analysis and annotation of proteins from whole genomes. Nucleic Acids Res 2004 32 Database D41-44 308826 14681354
-
(2004)
Nucleic Acids Res
-
-
Mewes, H.W.1
Amid, C.2
Arnold, R.3
Frishman, D.4
Guldener, U.5
Mannhaupt, G.6
Munsterkotter, M.7
Pagel, P.8
Strack, N.9
Stumpflen, V.10
-
19
-
-
0033687763
-
A random graph model for massive graphs
-
Portland, Oregon: ACM Portland, OR
-
Aiello W Chung F Lu L A random graph model for massive graphs. Proceedings of the Thirty-Second Annual ACM Symposium on Theory of Computing: May 21-23, 2000; Portland, OR Portland, Oregon: ACM 2000 171-180
-
(2000)
Proceedings of the Thirty-Second Annual ACM Symposium on Theory of Computing: May 21-23, 2000
, pp. 171-180
-
-
Aiello, W.1
Chung, F.2
Lu, L.3
-
20
-
-
0035648637
-
A Faster Algorithm for Betweenness Centrality
-
Brandes U A Faster Algorithm for Betweenness Centrality. J Mathematical Sociol 2001 25 163-177
-
(2001)
J Mathematical Sociol
, vol.25
, pp. 163-177
-
-
Brandes, U.1
-
21
-
-
38049036713
-
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks
-
Yang Q Lonardi S A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks. Int J Data Mining Bioinformatics 2007 1 241-247
-
(2007)
Int J Data Mining Bioinformatics
, vol.1
, pp. 241-247
-
-
Yang, Q.1
Lonardi, S.2
-
22
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
218723 14517352
-
Spirin V Mirny LA Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 2003 100 12123-12128 218723 14517352.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
24
-
-
0037447257
-
Assessing experimentally derived interactions in a small world
-
404686 12676999
-
Goldberg DS Roth FP Assessing experimentally derived interactions in a small world. Proc Natl Acad Sci USA 2003 100 4372-4376 404686 12676999
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4372-4376
-
-
Goldberg, D.S.1
Roth, F.P.2
-
25
-
-
0242268461
-
Predicting protein functions from redundancies in large-scale protein interaction networks
-
240660 14566057
-
Samanta MP Liang S Predicting protein functions from redundancies in large-scale protein interaction networks. Proc Natl Acad Sci USA 2003 100 12579-12583 240660 14566057
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12579-12583
-
-
Samanta, M.P.1
Liang, S.2
-
28
-
-
12344269924
-
GO: TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
15297299
-
Boyle EI Weng S Gollub J Jin H Botstein D Cherry JM Sherlock G GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004 20 3710-3715 15297299
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
Sherlock, G.7
-
29
-
-
0033608992
-
Bifurcation of the mitotic checkpoint pathway in budding yeast
-
21804 10220406
-
Li R Bifurcation of the mitotic checkpoint pathway in budding yeast. Proc Natl Acad Sci USA 1999 96 4989-4994 21804 10220406
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4989-4994
-
-
Li, R.1
-
30
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
12434058
-
Wang A Kurdistani SK Grunstein M Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 2002 298 1412-1414 12434058
-
(2002)
Science
, vol.298
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
31
-
-
0032792445
-
The ZDS1 and ZDS2 proteins require the Sir3p component of yeast silent chromatin to enhance the stability of short linear centromeric plasmids
-
10398844
-
Roy N Runge KW The ZDS1 and ZDS2 proteins require the Sir3p component of yeast silent chromatin to enhance the stability of short linear centromeric plasmids. Chromosoma 1999 108 146-161 10398844
-
(1999)
Chromosoma
, vol.108
, pp. 146-161
-
-
Roy, N.1
Runge, K.W.2
-
33
-
-
0028023358
-
Control of the yeast bud-site assembly GTPase Cdc42. Catalysis of guanine nucleotide exchange by Cdc24 and stimulation of GTPase activity by Bem3
-
8300560
-
Zheng Y Cerione R Bender A Control of the yeast bud-site assembly GTPase Cdc42. Catalysis of guanine nucleotide exchange by Cdc24 and stimulation of GTPase activity by Bem3. J Biol Chem 1994 269 2369-2372 8300560
-
(1994)
J Biol Chem
, vol.269
, pp. 2369-2372
-
-
Zheng, Y.1
Cerione, R.2
Bender, A.3
-
34
-
-
0037197886
-
The identification of functional modules from the genomic association of genes
-
122872 11983890
-
Snel B Bork P Huynen MA The identification of functional modules from the genomic association of genes. Proc Natl Acad Sci USA 2002 99 5890-5895 122872 11983890
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5890-5895
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
35
-
-
13844283294
-
Physical and functional modularity of the protein network in yeast
-
16247890
-
Wilhelm T Nasheuer HP Huang S Physical and functional modularity of the protein network in yeast. Mol Cell Proteomics 2003 2 292-298 16247890
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 292-298
-
-
Wilhelm, T.1
Nasheuer, H.P.2
Huang, S.3
-
37
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
149346 12525261
-
Bader GD Hogue CW An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003 4 2 149346 12525261
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
38
-
-
0038074373
-
Topological structure analysis of the protein-protein interaction network in budding yeast
-
154226 12711690
-
Bu D Zhao Y Cai L Xue H Zhu X Lu H Zhang J Sun S Ling L Zhang N et al. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res 2003 31 2443-2450 154226 12711690
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2443-2450
-
-
Bu, D.1
Zhao, Y.2
Cai, L.3
Xue, H.4
Zhu, X.5
Lu, H.6
Zhang, J.7
Sun, S.8
Ling, L.9
Zhang, N.10
-
39
-
-
33748701649
-
Detecting functional modules in the yeast protein-protein interaction network
-
16837529
-
Chen J Yuan B Detecting functional modules in the yeast protein-protein interaction network. Bioinformatics 2006 22 2283-2290 16837529
-
(2006)
Bioinformatics
, vol.22
, pp. 2283-2290
-
-
Chen, J.1
Yuan, B.2
|