Studying of the bacterial growth phases using fourier transform infrared spectroscopy and multivariate analysis

Journal of Rapid Methods and Automation in Microbiology

Volumn 16, Issue 1, 2008, Pages 73-89

  Al Qadiri, Hamzah M ^a   Al Alami, Nivin I ^a   Lin, Mengshi ^b   Al Holy, Murad ^c   Cavinato, Anna G ^d   Rasco, Barbara A ^e  

^a UNIVERSITY OF JORDAN   (Jordan)

^b UNIVERSITY OF MISSOURI   (United States)

^c HASHEMITE UNIVERSITY   (Jordan)

^d EASTERN OREGON UNIVERSITY   (United States)

^e WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; LISTERIA INNOCUA;

EID: 40149093575     PISSN: 10603999     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1745-4581.2008.00117.x     Document Type: Article

References (34)

1. AKERLUND, T., NORDSTROM, K. and BERNANDER, R. 1995. Analysis of cell size and DNA content in exponentially growing and stationary‐phase batch cultures of Escherichia coli. J. Bacteriol. 177, 6791–6797.
2. AL‐HOLY, M.A., LIN, M., AL‐QADIRI, H. and RASCO, B.A. 2006. Discrimination of foodborne pathogens by Fourier transform infrared spectroscopy and principal component analysis. J. Rapid Methods Auto. Microbiol. 14, 189–200.
3. AL‐QADIRI, H.M., LIN, M., CAVINATO, A.G. and RASCO, B.A. 2006. Fourier transform infrared spectroscopy, detection and identification of Escherichai coli O157:H7 and Alicyclobacillus strains in apple juice. Int. J. Food Microbiol. 111, 73–80.
4. ATLAS, R.M. 1988. Microbiology Fundamentals and Applications, 2nd Ed., pp. 106–110, Macmillan Publishing Company, New York.
5. BEATTIE, S.H., HOLT, C., HIRST, D. and WILLIAMS, A.G. 1998. Discrimination among Bacillus cereus, B. mycoides and B. thuringiensis and some other species of the genus Bacillus by Fourier transform infrared spectroscopy. FEMS Microbiol. Lett. 164, 201–206.
6. CHOO‐SMITH, L.P., MAQUELIN, K., VREESWIJK, T.V., BRUINING, H.A., PUPPELS, G.J., NGO THI, N.A., KRISCHNER, C., NAUMANN, D., AMI, D., VILLA, A.M. ET AL. 2001. Investigating microbial (micro) colony heterogeneity by vibrational spectroscopy. Appl. Environ. Microbiol. 67, 1461–1469.
7. FILIP, Z. and HERMANN, S. 2001. An attempt to differentiate Pseudomonas spp. and other soil bacteria by FT‐IR spectroscopy. Eur. J. Soil Biol. 37, 137–143.
8. GARBUTT, J. 1997. Essentials of Food Microbiology, 1st Ed., pp. 29–37, Arnold, London.
9. GARIP, S., BOZOGLU, F. and SEVERCAN, F. 2007. Differentiation of mesophilic and thermophilic bacteria with Fourier transform infrared spectroscopy. Appl. Spectrosc. 61, 186–192.
10. GOODACRE, R., TIMMINS, E.M., ROONEY, P.J., ROWLAND, J.J. and KELL, D.B. 1996. Rapid identification of Streptococcus and Enterococcus species using diffuse reflectance‐absorbance Fourier transform infrared spectroscopy and artificial neural networks. FEMS Microbiol. Lett. 140, 233–239.
11. GOODACRE, R., TIMMINS, E.M., BURTON, R., KADERBHAI, R., WOODWARD, A.M. and KELL, D.B. 1998. Rapid identification of urinary tract infection bacteria using hyperspectral whole‐organism fingerprinting and artificial neural networks. Microbiol. 144, 1157–1170.
12. HAMPTON, K.A., CAVINATO, A.G., MAYES, D.M., BOE, S.J. and HOFFNAGLE, T.L. 20012002. Near infrared spectroscopic classification of gender and maturity in Chincook salmon (Oncorhynchus tshawytscha). East. Oregon Sci. J. XVII, 31–36.
13. HELM, D., LABISCHINSKI, H., SCHALLEHN, G. and NAUMANN, D. 1991. Classification and identification of bacteria by Fourier transform infrared spectroscopy. J. Gen. Microbiol. 137, 69–79.
14. HOLT, C., HIRST, D., SUTHERLAND, A. and MACDONALD, F. 1995. Discrimination of species in the genus Listeria by Fourier transform infrared spectroscopy and canonical variate analysis. Appl. Environ. Microbiol. 61, 377–378.
15. HONG, K., SUN, S., TIAN, W., CHEN, G.Q. and HUANG, W. 1999. A rapid method for detecting bacterial polyhydroxyalkanoates in intact cells by Fourier transform infrared spectroscopy. Appl. Microbiol. Biotechnol. 51, 523–526.
16. HUANG, Y., ROGERS, T.M., WENZ, M.A., CAVINATO, A.G., MAYES, D.M., BLEDSOE, G.E. and RASCO, B.A. 2001. Detection of sodium chloride in cured salmon roe by SW‐IR spectroscopy. J. Agric. Food Chem. 49, 4161–4167.
17. HUANG, Y., CAVINATO, A.G., MAYES, D.M., BLEDSOE, G.E. and RASCO, B.A. 2002. Non‐destructive prediction of moisture and sodium chloride in cold smoked Atlantic salmon (Salmo salar). J. Food Sci. 67, 2543–2547.
18. KANSIZ, M., HERAUD, P., WOOD, B., BURDEN, F., BEARDALL, J. and MCNAUGHTON, D. 1999. Fourier transform infrared microspectroscopy and chemometrics as a tool for the discrimination of cyanobacterial strains. Phytochem. 52, 407–417.
19. KUMMERLE, M., SCHERER, S. and SEILER, H. 1998. Rapid and reliable identification of food‐borne yeasts by Fourier‐transform infrared spectroscopy. Appl. Environ. Microbiol. 64, 2207–2214.
20. LIN, M., CAVINATO, A.G., HUANG, Y. and RASCO, B.A. 2003. Predicting sodium chloride content in commercial king (Oncorhynchus tshawytscha) and chum (O. keta) hot smoked salmon fillet portions by short‐wavelength near‐infrared (SW‐NIR) spectroscopy. Food Res. Int. 36, 761–766.
21. LIN, M., AL‐HOLY, M., AL‐QADIRI, H., KANG, D‐H., CAVINATO, A.G., HUANG, Y. and RASCO, B.A. 2004. Discrimination of intact and injured Listeria monocytogenes by Fourier transform infrared spectroscopy and principal component analysis. J. Agric. Food Chem. 52, 5769–5772.
22. LIN, M., AL‐HOLY, M., CHANG, S‐S., HUANG, Y., CAVINATO, A.G., KANG, D‐H. and RASCO, B.A. 2005. Rapid discrimination of Alicyclobacillus strains in apple juice by Fourier transform infrared spectroscopy. Int. J. Food Microbiol. (in press).
23. MARTENS, H. and NAES, T. 1989. Multivariate Calibration. John Wiley and Sons, New York.
24. MOSSOBA, M., AL‐KHALDI, S., JACOBSON, A., CROWE, L. and FRY, F. 2003. Application of a disposable transparent filtration membrane to the infrared spectroscopic discrimination among bacterial species. J. Microbiol. Methods 55, 311–314.
25. NILSEN, H., ESAIASSEN, M., HEIA, K. and SIGERNES, F. 2002. Visible/near‐infrared spectroscopy: A new tool for the evaluation of fish freshness. J. Food Sci. 67, 1821–1826.
26. OBERREUTER, H., SEILER, H. and SCHERER, S. 2002. Identification of coryneform bacteria and related taxa by Fourier‐transform infrared (FT‐IR) spectroscopy. Int. J. Syst.. Evol. Microbiol. 52, 91–100.
27. OUST, A., MORETRO, T., KIRSCHNER, C., NARVHUS, J.A. and KOHLER, A. 2004. FT‐IR spectroscopy for identification of closely related lactobacilli. J. Microbiol. Methods 59, 149–162.
28. PEDONE, E., BARTOLUCCI, S., ROSSI, M., PIERFEDERIC, F.M., SCIRE, A., CACCIAMAN, T. and TANFAN, F. 2003. Structural and thermal stability analysis of Escherichia coli and Alicyclobacillus acidocaldarius thioredoxin revealed a molten globule‐like state in thermal denaturation pathway of the proteins: An infrared spectroscopic study. Biochem. J. 373, 875–883.
29. RODRIGUEZ‐SAONA, L.E., KHAMBATY, F.M., FRY, F.S. and CALVEY, E.M. 2001. Rapid detection and identification of bacterial strains by Fourier transform near‐infrared spectroscopy. J. Agric. Food Chem. 49, 574–579.
30. RODRIGUEZ‐SAONA, L.E., KHAMBATY, F.M., FRY, F.S., DUBOIS, J. and CALVEY, E.M. 2004. Detection and identification of bacteria in a juice matrix with Fourier transform‐near infrared spectroscopy and multivariate analysis. J. Food Prot. 67, 2555–2559.
31. SANDT, C., SOCKALINGUM, G.D., AUBERT, D., LEPAN, H., LEPOUSE, C., JAUSSAUD, M., LEON, A., PINON, J.M., MANFAIT, M. and TOUBAS, D. 2003. Use of Fourier‐transform infrared spectroscopy for typing of Candida albicans strains isolated in intensive care units. J. Clin. Microbiol. 41, 954–959.
32. SCHMITT, J. and FLEMMING, H‐C. 1998. FTIR‐spectroscopy in microbial and material analysis. Int. Biodeterior. Biodegrad. 41, 1–11.
33. WENNING, M., SEILER, H. and SCHERER, S. 2002. Fourier‐transform infrared microspectroscopy, a novel and rapid tool for identification of yeasts. Appl. Environ. Microbial. 68, 4717–4721.
34. WINDER, C.L., CARR, E., GOODACRE, R. and SEVIOUR, R. 2004. The rapid identification of Acinetobacter species using Fourier transform infrared spectroscopy. J. Appl. Microbiol. 96, 328–339.