The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen

Developmental Biology

Volumn 315, Issue 2, 2008, Pages 355-368

  Cartagena, Joyce A ^a   Matsunaga, Sachihiro ^a   Seki, Motoaki ^b   Kurihara, Daisuke ^a   Yokoyama, Masami ^a   Shinozaki, Kazuo ^b   Fujimoto, Satoru ^c   Azumi, Yoshitaka ^d   Uchiyama, Susumu ^a   Fukui, Kiichi ^a  

^a OSAKA UNIVERSITY   (Japan)

^b RIKEN Center for Sustainable Resource Science   (Japan)

^c UNIVERSITY OF WYOMING   (United States)

^d KANAGAWA UNIVERSITY   (Japan)

Author keywords

Arabidopsis; Histone methylation; Pollen tube growth; SDG4; SET domain

Indexed keywords

ARABIDOPSIS PROTEIN; GREEN FLUORESCENT PROTEIN; HISTONE H3; LYSINE; PROTEIN SDG4; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CELL NUCLEUS; EPIGENETICS; FERTILIZATION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GROWTH REGULATION; INFLORESCENCE; METHYLATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DEVELOPMENT; PLANT REPRODUCTION; POLLEN TUBE GROWTH; PRIORITY JOURNAL; PROTEIN LOCALIZATION; TOBACCO;

ARABIDOPSIS; NICOTIANA TABACUM;

EID: 39949084673     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2007.12.016     Document Type: Article

References (59)

1. R. Aasland T.J. Gibson A.F. Stewart The PHD finger: implications for chromatin-mediated transcriptional regulation Trends Biochem. Sci. 20 1995 56 59
2. J.M. Alonso A.N. Stepanova T.J. Leisse C.J. Kim H. Chen P. Shinn D.K. Stevenson J. Zimmerman P. Barajas R. Cheuk C. Gadrinab C. Heller A. Jeske E. Koesema C.C. Meyers H. Parker L. Prednis Y. Ansari N. Choy H. Deen M. Geralt N. Hazari E. Hom M. Karnes C. Mulholland R. Ndubaku I. Schmidt P. Guzman L. Aguilar-Henonin M. Schmid D. Weigel D.E. Carter T. Marchand E. Risseeuw D. Brogden A. Zeko W.L. Crosby C.C. Berry J.R. Ecker Genome-wide insertional mutagenesis of Arabidopsis thaliana Science 301 2003 653 657
3. R. Alvarez-Vanegas S. Pien M. Sadder X. Witmer U. Grossniklaus Z. Avranova ATX-1, an Arabidopsis homolog of trithorax, activates flower hoemotic genes Curr. Biol. 13 2003 627 637
4. R. Bastow J.S. Mylne C. Lister Z. Lippman R.A. Martienssen C. Dean Vernalization requires epigenetic silencing of FLC by histone methylation Nature 427 2004 164 167
5. L.O. Baumbusch T. Thorstensen V. Krauss A. Fischer K. Naumann R. Assalkhou I. Schulz G. Reuter R.B. Aalen The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes Nucleic Acids Res. 29 2001 4319 4333
6. J.D. Becker L.C. Boavida J. Carneiro M. Haury J.A. Feijo Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome Plant Physiol. 133 2003 713 725
7. C. Beisel A. Imhof J. Greene E. Kremmer F. Sauer Histone methylation by the Drosophila epigenetic transcriptional regulator Ash1 Nature 419 2002 857 862
8. K.N. Byrd A. Shearn ASH1, a Drosophila trithorax group protein, is required for methylation of lysine 4 residues on histone H3 Proc. Natl. Acad. Sci. U. S. A. 100 2003 11535 11540
9. Y. Chanvivattana A. Bishopp D. Schubert C. Stock Y.H. Moon Z.R. Sung J. Goodrich Interaction of Polycomb-group proteins controlling flowering in Arabidopsis Development 131 2004 5263 5276
10. E.S. Coen E. Meyerowitz The war of the whorls: genetic interactions controlling flower development Nature 353 1991 31 37
11. L.M. Fan Y.F. Wang H. Wang W.H. Wu In vitro Arabidopsis pollen germination and characterization of the inward potassium currents in Arabidopsis pollen grain protoplasts J. Exp. Bot. 52 2001 1603 1614
12. J. Fuchs D. Demidov A. Houben I. Schubert Chromosomal histone modification patterns—from conservation to diversity Trends Plant Sci. 11 2006 199 208
13. A.R. Gendall Y.Y. Levy A. Wilson C. Dean The VERNALIZATION 2 gene mediates the epigenetic regulation of vernalization in Arabidopsis Cell 107 2001 525 535
14. J. Goodrich S. Tweedie Remembering of things past: chromatin remodeling in plant development Annu. Rev. Cell Dev. Biol. 18 2002 707 746
15. J. Goodrich P. Puangsomlee M. Martin D. Long E.M. Meyerowitz G. Coupland A polycomb-group gene regulates homeotic gene expression in Arabidopsis Nature 386 1997 44 51
16. U. Grossniklaus J. Vialle-Calzada M.A. Hoeppner W.B. Gagliano Maternal control of embryogenesis by MEDEA a polycomb group gene in Arabidopsis Science 280 1998 446 450
17. A.E. Guitton D.R. Page P. Chambrier C. Lionnet J.E. Faure U. Grossniklaus F. Berger Identification of new members of FERTILISATION INDEPENDENT SEED Polycomb group pathway involved in the control of seed development in Arabidopsis thaliana Development 131 2004 2971 2981
18. D. Honys D. Twell Comparative analysis of the Arabidopsis pollen transcriptome Plant Physiol. 132 2003 640 652
19. R. Howden S.K. Park J.M. Moore J. Orme U. Grossniklaus D. Twell Selection of T-DNA-tagged male and female gametophytic mutants by segregation distortion in Arabidopsis Genetics 149 1998 621 631
20. M. Ingouff Y. Hamamura M. Gourgues T. Higashiyama F. Berger Distinct dynamics of histone3 variants between the two fertilization products in plants Curr. Biol. 17 2007 1032 1037
21. T. Ito K. Shinozaki The MALE STERILITY1 gene of Arabidopsis , encoding a nuclear protein with a PHD-finger motif, is expressed in tapetal cells and is required for pollen maturation Plant Cell Physiol. 43 2002 1285 1292
22. J.P. Jackson A.M. Lindroth X. Cao S.E. Jacobsen Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase Nature 416 2002 556 560
23. T. Jenuwein The epigenetic magic of histone lysine methylation FEBS J. 273 2006 3121 3135
24. T. Jenuwein G. Laible R. Dorn G. Reuter SET domain proteins modulate chromatin domains in eu- and heterochromatin Cell Mol. Life Sci. 54 1998 80 93
25. A. Katz M. Oliva A. Mosquna O. Hakim N. Ohad FIE and CURLY LEAF Polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development Plant J. 37 2004 707 719
26. B. Klinge B. Uberlacker C. Korfhage W. Werr ZmHox: a novel class of maize homeobox genes Plant Mol. Biol. 30 1996 439 453
27. C. Köhler L. Hennig C. Spillane S. Pien W. Gruissem U. Grossniklaus The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1 Genes Dev. 17 2003 1540 1553
28. J.Y. Lee D.H. Lee Use of serial analysis of gene expression technology to reveal changes in gene expression in Arabidopsis pollen undergoing cold stress Plant Physiol. 132 2003 517 529
29. M. Luo P. Bilodeau A. Koltunow E.S. Dennis W.J. Peacock A.M. Chaudhury Genes controlling fertilization-independent seed development in Arabidopsis thaliana Proc. Natl. Acad. Sci. U. S. A. 96 1999 296 301
30. G. Makaverich O. Leroy U. Akinci D. Schubert O. Clarenz J. Goodrich U. Grossniklaus C. Köhler Different Polycomb group complexes regulate common target genes in Arabidopsis EMBO Rep. 7 2006 947 952
31. F. Malagnac L. Bartee J. Bender An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation EMBO J. 21 2002 6842 6852
32. Y.-H. Moon L. Chen R.-L. Pan H.-S. Chang T. Zhu D. Maffeo Z.R. Sung EMF genes maintain vegetative development by repressing the seed and flower development program Plant Cell 15 2003 681 693
33. T. Nakamura J. Blechman S. Tada T. Rozovskaia T. Itoyama F. Bullrich A. Mazo C.M. Croce B. Geiger E. Canaani huASH1 protein, a putative transcription factor encoded by a human homologue of the Drosophila ash1 gene, localizes to both nuclei and cell-cell tight junctions Proc. Natl. Acad. Sci. U. S. A. 97 2000 7284 7289
34. N. Ohad R. Yadegari L. Margossian M. Hannon D. Michaeli J.J. Harada R.B. Goldberg R.L. Fischer Mutations in FIE , a WD polycomb group gene, allow endosperm development without fertilization Plant Cell 11 1999 407 416
35. T. Okada P.L. Bhalla M.B. Singh Transcriptional activity of male gamete-specific histone gcH3 promoter in sperm cell of Lilium longiflorum Plant Cell Physiol. 46 2005 797 802
36. T. Okada M. Endo M.B. Singh P.L. Bhalla Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3 Plant J. 44 2005 557 568
37. T. Okada M.B. Singh P.L. Bhalla Histone H3 variants in male gametic cells of lily and H3 methylation in mature pollen Plant Mol. Biol. 62 2006 503 512
38. T. Okada P.L. Bhalla M.B. Singh Expressed sequence tag analysis of Lilium longiflorum generative cell Plant Cell Physiol. 47 2006 698 705
39. T. Okada M.B. Singh P.L. Bhalla Transcriptome profiling of Lilium longiflorum generative cells 4 by cDNA microarray Plant Cell Rep. 26 2007 1045 1052
40. T.V. Reddy J. Kaur B. Agashe V. Sundaresan I. Siddiqi The DUET gene is necessary for chromosome organization and progression during male meiosis in Arabidopsis and encodes a PHD finger protein Development 130 2003 5975 5987
41. J.C. Reyes L. Hennig W. Gruissem Chromatin remodeling and memory factors. New regulators of plant development Plant Physiol. 130 2002 1090 1101
42. Y. Sano I. Tanaka A histone H3.3-like gene specifically expressed in the vegetative cell of developing lily pollen Plant Cell Physiol. 46 2005 1299 1308
43. Y. Sano I. Tanaka Detection of differentially expressed variant histone H3.3 in the vegetative nucleus of lily pollen Sex Plant Reprod. 20 2007 27 33
44. U. Schindler H. Beckmann A.R. Cashmore HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region Plant J. 4 1993 137 150
45. D. Schumperli Cell-cycle regulation of histone gene expression Cell 45 1986 471 472
46. M. Seki M. Narusaka A. Kamiya J. Ishida M. Satou T. Sakurai M. Nakajima A. Enju K. Akiyama Y. Oono Functional annotation of a full-length Arabidopsis cDNA collection Science 296 2002 141 145
47. N.M. Springer C.A. Napoli D.A. Selinger R. Pandey K.C. Cone V.L. Chandler H.F. Kaeppler S.M. Kaeppler Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots Plant Physiol. 132 2003 1 19
48. Y. Tanaka Z. Katagiri K. Kawahashi D. Kioussis S. Kitajima Trithorax-group protein ASH1 methylates histone H3 lysine 36 Gene 397 2007 161 168
49. M.L. Tansengco M. Hayashi M. Kawaguchi H. Imaizumi-Anraku Y. Murooka crinkle , a novel symbiotic mutant that affects the infection thread growth and alters the root hair, trichome, and seed development in Lotus japonicus Plant Physiol. 131 2003 1054 1063
50. M. Tariq H. Saze A.V. Probst J. Lichota Y. Habu J. Paszkowski Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin Proc. Natl. Acad. Sci. U. S. A. 100 2003 8823 8827
51. N. Tripoulas D. LaJeunesse J. Gildea A. Shearn The Drosophila ash1 gene product, which is localized at specific sites on polytene chromosomes, contains a SET domain and a PHD finger Genetics 143 1996 913 928
52. K. Ueda I. Tanaka The appearance of male gamete-specific histones gH2B and gH3 during pollen development in Lilium longiflorum Dev. Biol. 169 1995 210 217
53. D. Weigel J. Glazebrook Arabidopsis : A Laboratory Manual 2002 Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York, USA
54. Z. Wilson S.M. Morroll J. Dawson R. Swarup P. Tinghe The Arabidopsis MALE STERILITY1 gene is a transcriptional regulator of male gametogenesis, with homology to the PHD-finger family of transcription factors Plant J. 28 2001 27 39
55. H. Xu I. Swoboda P.L. Bhalla M.B. Singh Male gametic cell-specific expression of H2A and H3 histone genes Plant Mol. Biol. 39 1999 607 614
56. X. Yang C.A. Makaroff H. Ma The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis Plant Cell 15 2003 1281 1295
57. N. Yoshida Y. Nanai L. Chen Y. Kato J. Hiratsuka T. Miwa Z.R. Sung S. Takahashi EMBRYONOIC FLOWER 2, a novel polycomb group protein homology, mediates shoot development in Arabidopsis Plant Cell 13 2001 1 12
58. Z. Zhao Y. Yu D. Meyer C. Wu W. Shen Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3K36 Nat. Cell Biol. 7 2005 1256 1260
59. P. Zimmermann M. Hirsch-Hoffmann L. Hennig W. Gruissem GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox Plant Physiol. 136 2004 2621 2632