-
1
-
-
33751099034
-
RNAi therapeutics: A potential new class of pharmaceutical drugs
-
Bumcrot D, Manoharan M, Koteliansky V, Sah DWY: RNAi therapeutics: A potential new class of pharmaceutical drugs. Nature Chem Biol (2006) 2(12):711-719.
-
(2006)
Nature Chem Biol
, vol.2
, Issue.12
, pp. 711-719
-
-
Bumcrot, D.1
Manoharan, M.2
Koteliansky, V.3
Sah, D.W.Y.4
-
2
-
-
8844262560
-
RNA interference and chemically modified small interfering RNAs
-
•• Provides excellent information on the mechanistic aspects of the RNAi process and on the design of synthetic siRNA oligonucleotides for RNAi applications
-
Manoharan M: RNA interference and chemically modified small interfering RNAs. Curr Opin Chem Biol (2004) 8(6):570-579. •• Provides excellent information on the mechanistic aspects of the RNAi process and on the design of synthetic siRNA oligonucleotides for RNAi applications.
-
(2004)
Curr Opin Chem Biol
, vol.8
, Issue.6
, pp. 570-579
-
-
Manoharan, M.1
-
3
-
-
0036752785
-
RNAi in human cells: Basic structural and functional features of small interfering RNA
-
Chiu Y-L, Rana TM: RNAi in human cells: Basic structural and functional features of small interfering RNA. Mol Cell (2002) 10(3):549-561.
-
(2002)
Mol Cell
, vol.10
, Issue.3
, pp. 549-561
-
-
Chiu, Y.-L.1
Rana, T.M.2
-
4
-
-
0037007828
-
Small interfering RNAs and their chemical synthesis
-
Micura R: Small interfering RNAs and their chemical synthesis. Angew Chem Int Ed (2002) 41(13):2265-2269.
-
(2002)
Angew Chem Int Ed
, vol.41
, Issue.13
, pp. 2265-2269
-
-
Micura, R.1
-
5
-
-
27844454796
-
Oligo- and poly-nucleotides: 50 Years of chemical synthesis
-
Provides a historical and comprehensive account of the synthetic methods that have been developed for the synthesis of DNA and RNA oligonucleotides over a period of more than half a century, ••
-
Reese CB: Oligo- and poly-nucleotides: 50 Years of chemical synthesis. Org Biomol Chem (2005) 3(21):3851-3868. •• Provides a historical and comprehensive account of the synthetic methods that have been developed for the synthesis of DNA and RNA oligonucleotides over a period of more than half a century.
-
(2005)
Org Biomol Chem
, vol.3
, Issue.21
, pp. 3851-3868
-
-
Reese, C.B.1
-
6
-
-
2942558637
-
Recent advances in the high-speed solid phase synthesis of RNA
-
Marshall WS, Kaiser RJ: Recent advances in the high-speed solid phase synthesis of RNA. Curr Opin Chem Biol (2004) 8(3):222-229.
-
(2004)
Curr Opin Chem Biol
, vol.8
, Issue.3
, pp. 222-229
-
-
Marshall, W.S.1
Kaiser, R.J.2
-
7
-
-
11144319059
-
Current strategies for the synthesis of RNA
-
Focuses on strategies for 2′-hydroxyl protection and deprotection in the chemical synthesis of RNA oligonucleotides, •
-
Müller S, Wolf J, Ivanov SA: Current strategies for the synthesis of RNA. Curr Org Synth (2004) 1(3):293-307. • Focuses on strategies for 2′-hydroxyl protection and deprotection in the chemical synthesis of RNA oligonucleotides.
-
(2004)
Curr Org Synth
, vol.1
, Issue.3
, pp. 293-307
-
-
Müller, S.1
Wolf, J.2
Ivanov, S.A.3
-
8
-
-
49149135789
-
-
Beaucage SL, Caruthers MH: Deoxynucleoside phosphoramidites - A new class of key intermediates for deoxypolynucleotide synthesis. Tetrahedron Lett (1981) 22(20):1859-1862. • Describes the pioneering research that led to the development of modern phosphoramidite chemistry for the solid-phase synthesis of DNA and RNA oligonucleotides. This paper has been, to date, cited more than 1550 times in the scientific literature.
-
Beaucage SL, Caruthers MH: Deoxynucleoside phosphoramidites - A new class of key intermediates for deoxypolynucleotide synthesis. Tetrahedron Lett (1981) 22(20):1859-1862. • Describes the pioneering research that led to the development of modern phosphoramidite chemistry for the solid-phase synthesis of DNA and RNA oligonucleotides. This paper has been, to date, cited more than 1550 times in the scientific literature.
-
-
-
-
9
-
-
0026606239
-
Advances in the synthesis of oligonucleotides by the phosphoramidite approach
-
Beaucage SL, Iyer RP: Advances in the synthesis of oligonucleotides by the phosphoramidite approach. Tetrahedron (1992) 48(12):2223-2311.
-
(1992)
Tetrahedron
, vol.48
, Issue.12
, pp. 2223-2311
-
-
Beaucage, S.L.1
Iyer, R.P.2
-
10
-
-
39549093926
-
-
Beaucage SL, Caruthers MH: Synthetic strategies and parameters involved in the synthesis of oligodeoxyribonucleotides according to the phosphoramidite method. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):3.3.1-3.3.20.
-
Beaucage SL, Caruthers MH: Synthetic strategies and parameters involved in the synthesis of oligodeoxyribonucleotides according to the phosphoramidite method. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):3.3.1-3.3.20.
-
-
-
-
11
-
-
39549110148
-
-
Iyer RP: Nucleobase protection of deoxyribo- and ribonucleosides. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):2.1.1-2.1.17.
-
Iyer RP: Nucleobase protection of deoxyribo- and ribonucleosides. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):2.1.1-2.1.17.
-
-
-
-
12
-
-
39549117494
-
-
Seliger H: Protection of 5′-hydroxy functions of nucleosides. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):2.3.1-2.3.34.
-
Seliger H: Protection of 5′-hydroxy functions of nucleosides. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):2.3.1-2.3.34.
-
-
-
-
13
-
-
39549098476
-
-
Iyer RP, Beaucage SL: Oligonucleotide synthesis. In: Comprehensive Natural Products Chemistry, 7: DNA and Aspects of Molecular Biology. Kool ET (Ed), Elsevier Science, London, UK (1999):105-152.
-
Iyer RP, Beaucage SL: Oligonucleotide synthesis. In: Comprehensive Natural Products Chemistry, Vol 7: DNA and Aspects of Molecular Biology. Kool ET (Ed), Elsevier Science, London, UK (1999):105-152.
-
-
-
-
14
-
-
39549118823
-
-
Pon RT: Solid-phase supports for oligonucleotide synthesis. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):3.1.1-3.1.28.
-
Pon RT: Solid-phase supports for oligonucleotide synthesis. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):3.1.1-3.1.28.
-
-
-
-
15
-
-
0023518718
-
The automated chemical synthesis of long oligoribuncleotides using 2′-O-silylated ribonucleoside 3′-O-phosphoramidites on a controlled-pore glass support: Synthesis of a 43-nucleotide sequence similar to the 3′-half molecule of an Escherichia coli formylmethionine tRNA
-
Usman N, Ogilvie KK, Jiang MY, Cedergren RJ: The automated chemical synthesis of long oligoribuncleotides using 2′-O-silylated ribonucleoside 3′-O-phosphoramidites on a controlled-pore glass support: Synthesis of a 43-nucleotide sequence similar to the 3′-half molecule of an Escherichia coli formylmethionine tRNA. J Am Chem Soc (1987) 109(25):7845-7854.
-
(1987)
J Am Chem Soc
, vol.109
, Issue.25
, pp. 7845-7854
-
-
Usman, N.1
Ogilvie, K.K.2
Jiang, M.Y.3
Cedergren, R.J.4
-
16
-
-
39549098803
-
-
Reese CB: Protection of 2′-hydroxy functions of ribonucleosides. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):2.2.1-2.2.24.
-
Reese CB: Protection of 2′-hydroxy functions of ribonucleosides. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2000):2.2.1-2.2.24.
-
-
-
-
17
-
-
33646199862
-
RNA interference by 2′,5′-linked nucleic acid duplexes in mammalian cells
-
Prakash TP, Kraynack B, Baker BF, Swayze EE, Bhat B: RNA interference by 2′,5′-linked nucleic acid duplexes in mammalian cells. Bioorg Med Chem Lett (2006) 16(12):3238-3240.
-
(2006)
Bioorg Med Chem Lett
, vol.16
, Issue.12
, pp. 3238-3240
-
-
Prakash, T.P.1
Kraynack, B.2
Baker, B.F.3
Swayze, E.E.4
Bhat, B.5
-
19
-
-
0034695719
-
Some observations relating to the use of 1-aryl-4-alkoxypiperidin-4-yl groups for the protection of the 2′-hydroxy functions in the chemical synthesis of oligoribonucleotides
-
Lloyd W, Reese CB, Song Q, Vandersteen AM, Visintin C, Zhang P-Z: Some observations relating to the use of 1-aryl-4-alkoxypiperidin-4-yl groups for the protection of the 2′-hydroxy functions in the chemical synthesis of oligoribonucleotides. J Chem Soc Perkin Trans 1 (2000) (2):165-176.
-
(2000)
J Chem Soc Perkin Trans 1
, vol.2
, pp. 165-176
-
-
Lloyd, W.1
Reese, C.B.2
Song, Q.3
Vandersteen, A.M.4
Visintin, C.5
Zhang, P.-Z.6
-
20
-
-
26644439319
-
Large-scale synthesis of 'Cpep' RNA monomers and their application in automated RNA synthesis
-
Pon RT, Yu S, Prabhavalkar T, Mishra T, Kulkami B, Sanghvi YS: Large-scale synthesis of 'Cpep' RNA monomers and their application in automated RNA synthesis. Nucleosides Nucleotides Nucleic Acids (2005) 24(5-7):777-781.
-
(2005)
Nucleosides Nucleotides Nucleic Acids
, vol.24
, Issue.5-7
, pp. 777-781
-
-
Pon, R.T.1
Yu, S.2
Prabhavalkar, T.3
Mishra, T.4
Kulkami, B.5
Sanghvi, Y.S.6
-
21
-
-
0026497802
-
-
Schwartz ME, Breaker RR, Asteriadis GT, deBear JS, Gough GR: Rapid synthesis of oligoribonucleotides using 2′-O-(o- nitrobenzyloxymethyl)-protected monomers. Bioorg Med Chem Lett (1992) 2(9):1019-1024. •• Describes findings that have been inspirational to researchers in the field. The authors argued that the flexibility of the benzyloxymethyl group is likely to be responsible for minimizing the steric hindrance around the activated phosphoramidite function, which imparted improved coupling kinetics and coupling efficiencies to these phosphoramidites relative to the bulkier 2′-O-protected ribonucleoside phosphoramidites.
-
Schwartz ME, Breaker RR, Asteriadis GT, deBear JS, Gough GR: Rapid synthesis of oligoribonucleotides using 2′-O-(o- nitrobenzyloxymethyl)-protected monomers. Bioorg Med Chem Lett (1992) 2(9):1019-1024. •• Describes findings that have been inspirational to researchers in the field. The authors argued that the flexibility of the benzyloxymethyl group is likely to be responsible for minimizing the steric hindrance around the activated phosphoramidite function, which imparted improved coupling kinetics and coupling efficiencies to these phosphoramidites relative to the bulkier 2′-O-protected ribonucleoside phosphoramidites.
-
-
-
-
22
-
-
0030031812
-
p-Nitrobenzyloxymethyl: A new fluoride-removable protecting group for ribonucleoside 2′- hydroxyls
-
Gough GR, Miller TJ, Mantick NA: p-Nitrobenzyloxymethyl: A new fluoride-removable protecting group for ribonucleoside 2′- hydroxyls. Tetrahedron Lett (1996) 37(7):981-982.
-
(1996)
Tetrahedron Lett
, vol.37
, Issue.7
, pp. 981-982
-
-
Gough, G.R.1
Miller, T.J.2
Mantick, N.A.3
-
23
-
-
9644264254
-
Oligoribonucleotide synthesis by the use of 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group
-
Umemoto T, Wada T: Oligoribonucleotide synthesis by the use of 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group. Tetrahedron Lett (2004) 45(52):9529-9531.
-
(2004)
Tetrahedron Lett
, vol.45
, Issue.52
, pp. 9529-9531
-
-
Umemoto, T.1
Wada, T.2
-
24
-
-
23944445280
-
A new RNA synthetic method with a 2′-O-(2-cyanoethoxymethyl) protecting group
-
Ohgi T, Mastutomi Y, Ishiyama K, Kitagawa H, Shiba Y, Yano J: A new RNA synthetic method with a 2′-O-(2-cyanoethoxymethyl) protecting group. Org Lett (2005) 7(16):3477-3480.
-
(2005)
Org Lett
, vol.7
, Issue.16
, pp. 3477-3480
-
-
Ohgi, T.1
Mastutomi, Y.2
Ishiyama, K.3
Kitagawa, H.4
Shiba, Y.5
Yano, J.6
-
25
-
-
34250829042
-
-
Shiba Y, Masuda H, Watanabe N, Ego T, Takagaki K, Ishiyama K, Ohgi T, Yano J: Chemical synthesis of a very long oligoribonucleotide with 2-cyanoethoxymethyl (CEM) as the 2′-O-protecting group: Structural identification and biological activity of a synthetic 110mer precursor-microRNA candidate. Nucleic Acids Res (2007) 35(10):3287-3296. •• Describes an efficient phosphoramidite chemistry for the solid-phase synthesis of oligoribonucleotides that allows the preparation of an RNA oligonucleotide composed of 110 nucleobases. This outstanding achievement underscores the structural and perhaps electronic characteristics of 2′-hydroxyl protecting groups for rapid and efficient phosphoramidite coupling reactions.
-
Shiba Y, Masuda H, Watanabe N, Ego T, Takagaki K, Ishiyama K, Ohgi T, Yano J: Chemical synthesis of a very long oligoribonucleotide with 2-cyanoethoxymethyl (CEM) as the 2′-O-protecting group: Structural identification and biological activity of a synthetic 110mer precursor-microRNA candidate. Nucleic Acids Res (2007) 35(10):3287-3296. •• Describes an efficient phosphoramidite chemistry for the solid-phase synthesis of oligoribonucleotides that allows the preparation of an RNA oligonucleotide composed of 110 nucleobases. This outstanding achievement underscores the structural and perhaps electronic characteristics of 2′-hydroxyl protecting groups for rapid and efficient phosphoramidite coupling reactions.
-
-
-
-
26
-
-
33846089287
-
2-(4-Tolylsulfonyl) ethoxymethyl (TEM) - A new 2′-OH protecting group for solid-supported RNA synthesis
-
Zhou C, Honcharenko D, Chattopadhyaya J: 2-(4-Tolylsulfonyl) ethoxymethyl (TEM) - A new 2′-OH protecting group for solid-supported RNA synthesis. Org Biomol Chem (2007) 5(2):333-343.
-
(2007)
Org Biomol Chem
, vol.5
, Issue.2
, pp. 333-343
-
-
Zhou, C.1
Honcharenko, D.2
Chattopadhyaya, J.3
-
27
-
-
34250358682
-
-
Zhou C, Pathmasiri W, Honcharenko D, Chatterjee S, Barman J, Chattopadhyaya J: High-quality oligo-RNA synthesis using the new 2′-O-TEM protecting group by selectively quenching the addition of p-tolyl vinyl sulphone to exocyclic amino functions. Can J Chem (2007) 85(4):293-301. • Presents evidence indicating that the crude RNA oligonucleotides, prepared using 2′-O-TEM-protected phosphoramidites, are sufficiently pure (> 90%) after desalting for biological studies without the need for additional purification.
-
Zhou C, Pathmasiri W, Honcharenko D, Chatterjee S, Barman J, Chattopadhyaya J: High-quality oligo-RNA synthesis using the new 2′-O-TEM protecting group by selectively quenching the addition of p-tolyl vinyl sulphone to exocyclic amino functions. Can J Chem (2007) 85(4):293-301. • Presents evidence indicating that the crude RNA oligonucleotides, prepared using 2′-O-TEM-protected phosphoramidites, are sufficiently pure (> 90%) after desalting for biological studies without the need for additional purification.
-
-
-
-
28
-
-
34648829224
-
Chemical synthesis of RNA via 2′-O-cyanoethylated intermediates
-
Saneyoshi H, Ando K, Seio K, Sekine M: Chemical synthesis of RNA via 2′-O-cyanoethylated intermediates. Tetrahedron (2007) 63(45):11195-11203.
-
(2007)
Tetrahedron
, vol.63
, Issue.45
, pp. 11195-11203
-
-
Saneyoshi, H.1
Ando, K.2
Seio, K.3
Sekine, M.4
-
29
-
-
28744432434
-
A general method for the synthesis of 2′-O-cyanoethylated oligoribonucleotides having promising hybridization affinity for DNA and RNA and enhanced nuclease resistance
-
Saneyoshi H, Seio K, Sekine M: A general method for the synthesis of 2′-O-cyanoethylated oligoribonucleotides having promising hybridization affinity for DNA and RNA and enhanced nuclease resistance. J Org Chem (2005) 70(25):10453-10460.
-
(2005)
J Org Chem
, vol.70
, Issue.25
, pp. 10453-10460
-
-
Saneyoshi, H.1
Seio, K.2
Sekine, M.3
-
30
-
-
33749183419
-
Synthesis of RNA using 2′-O-DTM protection
-
Semenyuk A, Földesi A, Johansson T, Estmer-Nilsson C, Blomgren P, Brännvall M, Kirsebom LA, Kwiatkowski M: Synthesis of RNA using 2′-O-DTM protection. J Am Chem Soc (2006) 128(38):12356-12357.
-
(2006)
J Am Chem Soc
, vol.128
, Issue.38
, pp. 12356-12357
-
-
Semenyuk, A.1
Földesi, A.2
Johansson, T.3
Estmer-Nilsson, C.4
Blomgren, P.5
Brännvall, M.6
Kirsebom, L.A.7
Kwiatkowski, M.8
-
31
-
-
33847772486
-
Assessment of 4-nitrogenated benzyloxymethyl groups for 2′-hydroxyl protection in solid-phase RNA synthesis
-
Discusses the consequences of electron-donating groups on the rates of deprotection of 2′-(4-substituted benzyl)acetals from a chimeric polyuridylic acid under mild acidic conditions, •
-
Cieślak J, Kauffman JS, Kolodziejski MJ, Lloyd JR, Beaucage SL: Assessment of 4-nitrogenated benzyloxymethyl groups for 2′-hydroxyl protection in solid-phase RNA synthesis. Org Lett (2007) 9(4):671-674. • Discusses the consequences of electron-donating groups on the rates of deprotection of 2′-(4-substituted benzyl)acetals from a chimeric polyuridylic acid under mild acidic conditions.
-
(2007)
Org Lett
, vol.9
, Issue.4
, pp. 671-674
-
-
Cieślak, J.1
Kauffman, J.S.2
Kolodziejski, M.J.3
Lloyd, J.R.4
Beaucage, S.L.5
-
32
-
-
41649103104
-
-
Cieślak J, Grajkowski A, Kauffman JS, Duff RJ, Beaucage SL: The 4-(N-dichloroacetyl-N-methylamino) benzyloxymethyl group for 2′-hydroxyl protection of ribonucleosides in the solid-phase synthesis of oligoribonucleotides. J Org Chem (2008) 73: in press.
-
Cieślak J, Grajkowski A, Kauffman JS, Duff RJ, Beaucage SL: The 4-(N-dichloroacetyl-N-methylamino) benzyloxymethyl group for 2′-hydroxyl protection of ribonucleosides in the solid-phase synthesis of oligoribonucleotides. J Org Chem (2008) 73: in press.
-
-
-
-
33
-
-
0035022138
-
-
Matysiak S, Pfleiderer W: Nucleotides. Part LXVIII. Acetals as new 2′-O-protecting functions for the synthesis of oligoribonucleotides: Synthesis of monomeric building units and oligoribonucleotides. Helv Chim Acta (2001) 84(5):1066-1085.
-
Matysiak S, Pfleiderer W: Nucleotides. Part LXVIII. Acetals as new 2′-O-protecting functions for the synthesis of oligoribonucleotides: Synthesis of monomeric building units and oligoribonucleotides. Helv Chim Acta (2001) 84(5):1066-1085.
-
-
-
-
34
-
-
33947159690
-
Solid-phase synthesis and on-column deprotection of RNA from 2′- (and 3′-)O-levulinated (Lv) ribonucleoside monomers
-
Lackey JG, Sabatino D, Damha MJ: Solid-phase synthesis and on-column deprotection of RNA from 2′- (and 3′-)O-levulinated (Lv) ribonucleoside monomers. Org Lett (2007) 9(5):789-792.
-
(2007)
Org Lett
, vol.9
, Issue.5
, pp. 789-792
-
-
Lackey, J.G.1
Sabatino, D.2
Damha, M.J.3
-
35
-
-
34548489137
-
A new synthetic route to oligoribonucleotides based on CpRu-catalyzed deallylation
-
Tanaka S, Hirakawa T, Oishi K, Hayakawa Y, Kitamura M: A new synthetic route to oligoribonucleotides based on CpRu-catalyzed deallylation. Tetrahedron Lett (2007) 48(41):7320-7322.
-
(2007)
Tetrahedron Lett
, vol.48
, Issue.41
, pp. 7320-7322
-
-
Tanaka, S.1
Hirakawa, T.2
Oishi, K.3
Hayakawa, Y.4
Kitamura, M.5
-
36
-
-
34250316198
-
Ion-tagged synthesis of an oligoribonucleotide pentamer - The continuing versatility of TBDMS chemistry
-
Presents an innovative approach to the solution-phase synthesis of oligoribonucleotides, •
-
Donga RA, Chan T-H, Damha MJ: Ion-tagged synthesis of an oligoribonucleotide pentamer - The continuing versatility of TBDMS chemistry. Can J Chem (2007) 85(4):274-282. • Presents an innovative approach to the solution-phase synthesis of oligoribonucleotides.
-
(2007)
Can J Chem
, vol.85
, Issue.4
, pp. 274-282
-
-
Donga, R.A.1
Chan, T.-H.2
Damha, M.J.3
-
37
-
-
33646005542
-
Carbohydrate chemistry for RNA interference: Synthesis and properties of RNA analogues modified in sugar-phosphate backbone
-
Emphasizes the synthesis and properties of sugar-modified and sugar-phosphate backbone-modified RNA oligonucleotides already used or potentially useful for RNAi applications, ••
-
Rozners E: Carbohydrate chemistry for RNA interference: Synthesis and properties of RNA analogues modified in sugar-phosphate backbone. Curr Org Chem (2006) 10(6):675-692. •• Emphasizes the synthesis and properties of sugar-modified and sugar-phosphate backbone-modified RNA oligonucleotides already used or potentially useful for RNAi applications.
-
(2006)
Curr Org Chem
, vol.10
, Issue.6
, pp. 675-692
-
-
Rozners, E.1
-
38
-
-
33745973937
-
Synthesis of oligoribonucleotides containing pyrimidine 2′-O-[(hydroxyalkoxy)methyl]ribonucleosides
-
Bobkov GV, Brilliantov KV, Mikhailov SN, Rozenski J, Van Aerschot A, Herdewijn P: Synthesis of oligoribonucleotides containing pyrimidine 2′-O-[(hydroxyalkoxy)methyl]ribonucleosides. Collect Czech Chem Commun (2006) 71(6):804-819.
-
(2006)
Collect Czech Chem Commun
, vol.71
, Issue.6
, pp. 804-819
-
-
Bobkov, G.V.1
Brilliantov, K.V.2
Mikhailov, S.N.3
Rozenski, J.4
Van Aerschot, A.5
Herdewijn, P.6
-
39
-
-
0032530479
-
Synthesis, biophysical properties, and nuclease resistance properties of mixed backbone oligodeoxynucleotides containing cationic internucleoside guanidinium linkages: Deoxynucleic guanidine/DNA chimeras
-
Barawkar DA, Bruice TC: Synthesis, biophysical properties, and nuclease resistance properties of mixed backbone oligodeoxynucleotides containing cationic internucleoside guanidinium linkages: Deoxynucleic guanidine/DNA chimeras. Proc Natl Acad Sci USA (1998) 95(19):11047-11052.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, Issue.19
, pp. 11047-11052
-
-
Barawkar, D.A.1
Bruice, T.C.2
-
40
-
-
16644385775
-
2′-O-[2-(guanidinium)ethyl]-modified oligonucleotides: Stabilizing effect on duplex and triplex structures
-
Prakash TP, Püschl A, Lesnik E, Mohan V, Tereshko V, Egli M, Manoharan M: 2′-O-[2-(guanidinium)ethyl]-modified oligonucleotides: Stabilizing effect on duplex and triplex structures. Org Lett (2004) 6(12):1971-1974.
-
(2004)
Org Lett
, vol.6
, Issue.12
, pp. 1971-1974
-
-
Prakash, T.P.1
Püschl, A.2
Lesnik, E.3
Mohan, V.4
Tereshko, V.5
Egli, M.6
Manoharan, M.7
-
41
-
-
33847024893
-
N,N′-Bis-(2- cyanoethoxycarbonyl)-2-methyl-2-thiopseudourea: A guanylating reagent for the synthesis of 2′-O-[2-(guanidinium)ethyl]-modified oligonucleotides
-
Prakash TP, Püschl A, Manoharan M: N,N′-Bis-(2- cyanoethoxycarbonyl)-2-methyl-2-thiopseudourea: A guanylating reagent for the synthesis of 2′-O-[2-(guanidinium)ethyl]-modified oligonucleotides. Nucleosides Nucleotides Nucleic Acids (2007) 26(2):149-159.
-
(2007)
Nucleosides Nucleotides Nucleic Acids
, vol.26
, Issue.2
, pp. 149-159
-
-
Prakash, T.P.1
Püschl, A.2
Manoharan, M.3
-
42
-
-
33645533269
-
-
Dowler T, Bergeron D, Tedeschi A-L, Paquet L, Ferrari N, Damha MJ: Improvements in siRNA properties mediated by 2′-deoxy-2′-fluoro- β-d-arabinoclucleic acid (FANA). Nucleic Acids Res (2006) 34(6):1669-1675. • Describes results indicating that the incorporation of 2′-deoxy-2′-fluoro-β-d- arabinonucleotides into the sense and antisense strands of siRNA duplexes, including the terminal 5′- or 3′-ends of siRNA duplexes, improves serum stability and increases the biological activity of the duplexes.
-
Dowler T, Bergeron D, Tedeschi A-L, Paquet L, Ferrari N, Damha MJ: Improvements in siRNA properties mediated by 2′-deoxy-2′-fluoro- β-d-arabinoclucleic acid (FANA). Nucleic Acids Res (2006) 34(6):1669-1675. • Describes results indicating that the incorporation of 2′-deoxy-2′-fluoro-β-d- arabinonucleotides into the sense and antisense strands of siRNA duplexes, including the terminal 5′- or 3′-ends of siRNA duplexes, improves serum stability and increases the biological activity of the duplexes.
-
-
-
-
43
-
-
39549120814
-
-
Viazovkina E, Mangos MM, Elzagheid MI, Damha MJ: Solid-phase synthesis of 2′-deoxy-2′-fluoro-β-d-oligoarabinonucleotides (2′F-ANA) and their phosphorothioate derivatives. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2002):4.15.1-4.15.22.
-
Viazovkina E, Mangos MM, Elzagheid MI, Damha MJ: Solid-phase synthesis of 2′-deoxy-2′-fluoro-β-d-oligoarabinonucleotides (2′F-ANA) and their phosphorothioate derivatives. In: Current Protocols in Nucleic Acid Chemistry. Beaucage SL, Bergstrom DE, Glick GD, Jones RA (Eds), John Wiley & Sons, Hoboken, NJ, USA (2002):4.15.1-4.15.22.
-
-
-
-
44
-
-
34247172025
-
2′-Fluoro-4′-thioarabino-modified oligonucleotides: Conformational switches linked to siRNA activity
-
Watts JK, Choubdar N, Sadalapure K, Robert F, Wahba AS, Pelletier J, Pinto BM, Damha MJ: 2′-Fluoro-4′-thioarabino-modified oligonucleotides: Conformational switches linked to siRNA activity. Nucleic Acids Res (2007) 35(5):1441-1451.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.5
, pp. 1441-1451
-
-
Watts, J.K.1
Choubdar, N.2
Sadalapure, K.3
Robert, F.4
Wahba, A.S.5
Pelletier, J.6
Pinto, B.M.7
Damha, M.J.8
-
45
-
-
34547187045
-
Studies on aminoisonucleoside modified siRNAs: Stability and silencing activity
-
Qiao RP, Du Q, Yang ZJ, Zhang LR, Zhang PZ, Liang ZC, Zhang LH: Studies on aminoisonucleoside modified siRNAs: Stability and silencing activity. Bioconjug Chem (2007) 18(4):1017-1024.
-
(2007)
Bioconjug Chem
, vol.18
, Issue.4
, pp. 1017-1024
-
-
Qiao, R.P.1
Du, Q.2
Yang, Z.J.3
Zhang, L.R.4
Zhang, P.Z.5
Liang, Z.C.6
Zhang, L.H.7
-
46
-
-
17044410074
-
Synthesis of novel siRNAs having thymidine dimers consisting of a carbamate or a urea linkage at their 3′ overhang regions and their ability to suppress human RNase L protein expression
-
Ueno Y, Naito T, Kawada K, Shibata A, Kim H-S, Wataya Y, Kitade Y: Synthesis of novel siRNAs having thymidine dimers consisting of a carbamate or a urea linkage at their 3′ overhang regions and their ability to suppress human RNase L protein expression. Biochem Biophys Res Commun (2005) 330(4):1168-1175.
-
(2005)
Biochem Biophys Res Commun
, vol.330
, Issue.4
, pp. 1168-1175
-
-
Ueno, Y.1
Naito, T.2
Kawada, K.3
Shibata, A.4
Kim, H.-S.5
Wataya, Y.6
Kitade, Y.7
-
47
-
-
34247483940
-
Tolerance of RNA interference toward modifications of the 5'antisense phosphate of small interfering RNA
-
Provides evidence indicating that the modification of the 5′-phosphate of the antisense strand of siRNA can still lead to RNA interference, although at a lower level than that induced by native siRNAs. This is in contrast to a number of other literature reports, •
-
Shah S, Friedman SH: Tolerance of RNA interference toward modifications of the 5'antisense phosphate of small interfering RNA. Oligonucleotides (2007) 17(1):35-43. • Provides evidence indicating that the modification of the 5′-phosphate of the antisense strand of siRNA can still lead to RNA interference, although at a lower level than that induced by native siRNAs. This is in contrast to a number of other literature reports.
-
(2007)
Oligonucleotides
, vol.17
, Issue.1
, pp. 35-43
-
-
Shah, S.1
Friedman, S.H.2
-
48
-
-
33646681661
-
Light controllable siRNAs regulate gene suppression and phenotypes in cells
-
Nguyen QN, Chavli RV, Marques JT, Conrad PG II, Wang D, He W, Belisle BE, Zhang A, Pastor LM, Witney FR, Morris M et al: Light controllable siRNAs regulate gene suppression and phenotypes in cells. Biochem Biophys Acta (2006) 1758(3):394-403.
-
(2006)
Biochem Biophys Acta
, vol.1758
, Issue.3
, pp. 394-403
-
-
Nguyen, Q.N.1
Chavli, R.V.2
Marques, J.T.3
Conrad II, P.G.4
Wang, D.5
He, W.6
Belisle, B.E.7
Zhang, A.8
Pastor, L.M.9
Witney, F.R.10
Morris, M.11
-
49
-
-
0033591143
-
Synthesis of protected d-altritol nucleosides as building blocks for oligonucleotide synthesis
-
Allart B, Busson R, Rozenski J, Van Aerschot A, Herdewijn P: Synthesis of protected d-altritol nucleosides as building blocks for oligonucleotide synthesis. Tetrahedron (1999) 55(21):6527- 6546.
-
(1999)
Tetrahedron
, vol.55
, Issue.21
, pp. 6527-6546
-
-
Allart, B.1
Busson, R.2
Rozenski, J.3
Van Aerschot, A.4
Herdewijn, P.5
-
50
-
-
39549096383
-
-
Abramov M, Herdewijn P: Synthesis of altritol nucleoside phosphoramidites for oligonucleotide synthesis. Curr Protoc Nucleic Acid Chem (2007) 30(Suppl):1.18.1-1.18.21.
-
Abramov M, Herdewijn P: Synthesis of altritol nucleoside phosphoramidites for oligonucleotide synthesis. Curr Protoc Nucleic Acid Chem (2007) 30(Suppl):1.18.1-1.18.21.
-
-
-
-
51
-
-
34047156573
-
-
Fisher M, Abramov M, Van Aerschot A, Xu D, Juliano RL, Herdewijn P: Inhibition of MDR1 expression with altritol-modified siRNAs. Nucleic Acids Res (2007) 35(4):1064-1074. •• Provides evidence that the incorporation of altritol residues at selected locations into both sense and antisense strands of siRNA duplexes was more effective than duplexes with one modified and one unmodified strand at inhibiting MDR1 expression. The results of this study suggest that altritol modifications may lead to pharmacologically potent siRNAs.
-
Fisher M, Abramov M, Van Aerschot A, Xu D, Juliano RL, Herdewijn P: Inhibition of MDR1 expression with altritol-modified siRNAs. Nucleic Acids Res (2007) 35(4):1064-1074. •• Provides evidence that the incorporation of altritol residues at selected locations into both sense and antisense strands of siRNA duplexes was more effective than duplexes with one modified and one unmodified strand at inhibiting MDR1 expression. The results of this study suggest that altritol modifications may lead to pharmacologically potent siRNAs.
-
-
-
-
52
-
-
33751578252
-
Suppression of MDR1 gene expression by chemically modified siRNAs
-
Logashenko EB, Vladimirova AV, Volkov AA, Repkova MN, Ven'yaminova AG, Zenkova MA, Chernolovskaya EL, Vlassov VV: Suppression of MDR1 gene expression by chemically modified siRNAs. Russ Chem Bull (2006) 55(7):1275-1283.
-
(2006)
Russ Chem Bull
, vol.55
, Issue.7
, pp. 1275-1283
-
-
Logashenko, E.B.1
Vladimirova, A.V.2
Volkov, A.A.3
Repkova, M.N.4
Ven'yaminova, A.G.5
Zenkova, M.A.6
Chernolovskaya, E.L.7
Vlassov, V.V.8
-
53
-
-
34447507937
-
Effect of base modifications on structure, thermodynamic stability, and gene silencing activity of short interfering RNA
-
Sipa K, Sochacka E, Kazmierczak-Baranska J, Maszewska M, Janicka M, Nowak G, Nawrot B: Effect of base modifications on structure, thermodynamic stability, and gene silencing activity of short interfering RNA. RNA (2007) 13(8):1301-1316.
-
(2007)
RNA
, vol.13
, Issue.8
, pp. 1301-1316
-
-
Sipa, K.1
Sochacka, E.2
Kazmierczak-Baranska, J.3
Maszewska, M.4
Janicka, M.5
Nowak, G.6
Nawrot, B.7
-
54
-
-
0028915734
-
Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry
-
Agris PF, Malkiewicz A, Kraszewski A, Everett K, Nawrot B, Sochacka E, Jankowska J, Guenther R: Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry. Biochimie (1995) 77(1-2):125-134.
-
(1995)
Biochimie
, vol.77
, Issue.1-2
, pp. 125-134
-
-
Agris, P.F.1
Malkiewicz, A.2
Kraszewski, A.3
Everett, K.4
Nawrot, B.5
Sochacka, E.6
Jankowska, J.7
Guenther, R.8
-
55
-
-
33748584060
-
First evaluation of acyloxymethyl or acylthiomethyl groups as biolabile 2′-O- protection of RNA
-
Describes an interesting conversion of 2′-O-protected polyuridylic acid to polyU is which is reported to proceed via an intracellular carboxyesterase-assisted hydrolysis of the 2′-O-acyloxymethyl or 2′-O-acylthiomethyl protecting groups, •
-
Parey N, Baraguey C, Vasseur J-J, Debart F: First evaluation of acyloxymethyl or acylthiomethyl groups as biolabile 2′-O- protection of RNA. Org Lett (2006) 8(17):3869-3872. • Describes an interesting conversion of 2′-O-protected polyuridylic acid to polyU is which is reported to proceed via an intracellular carboxyesterase-assisted hydrolysis of the 2′-O-acyloxymethyl or 2′-O-acylthiomethyl protecting groups.
-
(2006)
Org Lett
, vol.8
, Issue.17
, pp. 3869-3872
-
-
Parey, N.1
Baraguey, C.2
Vasseur, J.-J.3
Debart, F.4
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