메뉴 건너뛰기




Volumn 26, Issue 2, 2008, Pages 88-98

Completely sequenced genomes of pathogenic bacteria: A review

Author keywords

Complete bacterial genomes; Genomics; Pathogenic bacteria

Indexed keywords

BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; GENE IDENTIFICATION; GENE SEQUENCE; GENOME ANALYSIS; OPPORTUNISTIC INFECTION; REVIEW; SEQUENCE ANALYSIS;

EID: 39449111254     PISSN: 0213005X     EISSN: 15781852     Source Type: Journal    
DOI: 10.1157/13115544     Document Type: Review
Times cited : (9)

References (53)
  • 3
    • 0032425482 scopus 로고    scopus 로고
    • The diverse and dynamic structure of bacterial genomes
    • Casjens S. The diverse and dynamic structure of bacterial genomes. Annu Rev Genet. 1998;32:339-77.
    • (1998) Annu Rev Genet , vol.32 , pp. 339-377
    • Casjens, S.1
  • 4
    • 0025245767 scopus 로고
    • Organization of the bacterial chromosome
    • Krawiec S, Riley M. Organization of the bacterial chromosome. Microbiol Rev. 1990;54:502-39.
    • (1990) Microbiol Rev , vol.54 , pp. 502-539
    • Krawiec, S.1    Riley, M.2
  • 6
    • 0010414313 scopus 로고    scopus 로고
    • Evolution of gene order conservation in prokaryotes
    • research0020.1-0020.11
    • Tamames J. Evolution of gene order conservation in prokaryotes. Genome Biology. 2001;2:research0020.1-0020.11.
    • (2001) Genome Biology , vol.2
    • Tamames, J.1
  • 7
    • 37549070150 scopus 로고    scopus 로고
    • Evolution of genome architecture and the evolution of bacterial pathogens
    • Baquero F, Nombela C, Cassell GH, Gutierrez JA, editors, In press
    • Mira A, Pushker R. Evolution of genome architecture and the evolution of bacterial pathogens. In: Baquero F, Nombela C, Cassell GH, Gutierrez JA, editors. Introduction to evolutionary biology of bacterial and fungal pathogens. 2006. In press.
    • (2006) Introduction to evolutionary biology of bacterial and fungal pathogens
    • Mira, A.1    Pushker, R.2
  • 8
    • 0033995545 scopus 로고    scopus 로고
    • Horizontal gene transfer of glycosyl hydrolases of the rumen fungi
    • Garcia-Vallve S, Romeu A, Palau J. Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol Biol Evol. 2000;17:352-61.
    • (2000) Mol Biol Evol , vol.17 , pp. 352-361
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 9
    • 0036892058 scopus 로고    scopus 로고
    • Simultaneous horizontal gene transfer of a gene coding for ribosomal protein l27 and operational genes in Arthrobacter sp
    • Garcia-Vallve S, Simo FX, Montero MA, Arola L, Romeu A. Simultaneous horizontal gene transfer of a gene coding for ribosomal protein l27 and operational genes in Arthrobacter sp. J Mol Evol. 2002;55:632-7.
    • (2002) J Mol Evol , vol.55 , pp. 632-637
    • Garcia-Vallve, S.1    Simo, F.X.2    Montero, M.A.3    Arola, L.4    Romeu, A.5
  • 10
    • 84983711696 scopus 로고
    • Studies on the chemical nature of the substance inducing transformation of pneumococcal types: Induction of transformation by a deoxyribonucleic-acid fraction isolated from pneumococcus type III
    • Avery OT, MacLeod CM, McCarty M. Studies on the chemical nature of the substance inducing transformation of pneumococcal types: induction of transformation by a deoxyribonucleic-acid fraction isolated from pneumococcus type III. J Expl Med. 1944;79:137-58.
    • (1944) J Expl Med , vol.79 , pp. 137-158
    • Avery, O.T.1    MacLeod, C.M.2    McCarty, M.3
  • 11
    • 0033670249 scopus 로고    scopus 로고
    • Horizontal gene transfer in bacterial and archaeal complete genomes
    • Garcia-Vallve S, Romeu A, Palau J. Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res. 2000;10:1719-25.
    • (2000) Genome Res , vol.10 , pp. 1719-1725
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 12
    • 0037250391 scopus 로고    scopus 로고
    • HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes
    • García-Vallvé S, Guzmán E, Montero MA, Romeu A. HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes. Nucleic Acids Res. 2003;31:187-9.
    • (2003) Nucleic Acids Res , vol.31 , pp. 187-189
    • García-Vallvé, S.1    Guzmán, E.2    Montero, M.A.3    Romeu, A.4
  • 13
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira A, Ochman H, Moran NA. Deletional bias and the evolution of bacterial genomes. Trends Genet. 2001;17:589-96.
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 14
    • 0001802381 scopus 로고    scopus 로고
    • Molecular mechanisms of bacterial pathogenicity
    • Fuchs TM. Molecular mechanisms of bacterial pathogenicity. Naturwissenchaften. 1998;85:99-108.
    • (1998) Naturwissenchaften , vol.85 , pp. 99-108
    • Fuchs, T.M.1
  • 15
    • 0030091189 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies J. Origins and evolution of antibiotic resistance. Microbiologia. 1996;12:9-16.
    • (1996) Microbiologia , vol.12 , pp. 9-16
    • Davies, J.1
  • 16
    • 0033758756 scopus 로고    scopus 로고
    • Pathogenicity islands and the evolution of microbes
    • Hacker J, Kaper JB. Pathogenicity islands and the evolution of microbes. Annu Rev Microbiol. 2000;54:641-79.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 641-679
    • Hacker, J.1    Kaper, J.B.2
  • 17
    • 27444441247 scopus 로고    scopus 로고
    • Common themes in the genome strategies of pathogens
    • Lawrence JG. Common themes in the genome strategies of pathogens. Curr Opin Gen Dev. 2005;15:1-5.
    • (2005) Curr Opin Gen Dev , vol.15 , pp. 1-5
    • Lawrence, J.G.1
  • 18
    • 39449122193 scopus 로고    scopus 로고
    • How bacterial genomes change
    • Fraser CM, Read TD, Nelson KE, editors, Totowa N.J, Humana Press;
    • Read TD, Myers GSA. How bacterial genomes change. In: Fraser CM, Read TD, Nelson KE, editors. Microbial genomes. Totowa N.J.: Humana Press; 2004. p. 155-73.
    • (2004) Microbial genomes , pp. 155-173
    • Read, T.D.1    Myers, G.S.A.2
  • 20
    • 4644309277 scopus 로고    scopus 로고
    • Order and disorder in bacterial genomes
    • Rocha EP. Order and disorder in bacterial genomes. Curr Opin Microbiol. 2004;7:519-27.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 519-527
    • Rocha, E.P.1
  • 22
    • 0030775588 scopus 로고    scopus 로고
    • Strategies for whole microbial genome sequencing and analysis
    • Fraser CM, Fleischmann RD. Strategies for whole microbial genome sequencing and analysis. Electrophoresis. 1997;18:1207-16.
    • (1997) Electrophoresis , vol.18 , pp. 1207-1216
    • Fraser, C.M.1    Fleischmann, R.D.2
  • 26
    • 39449134539 scopus 로고    scopus 로고
    • Bioinformatics and microbial pathogenesis
    • Fraser CM, Read TD, Nelson KE, editors, Totowa N.J, Humana Press;
    • Brinjman FSL and Fueyo JL. Bioinformatics and microbial pathogenesis. In: Fraser CM, Read TD, Nelson KE, editors. Microbial genomes. Totowa N.J.: Humana Press; 2004. p. 47-70.
    • (2004) Microbial genomes , pp. 47-70
    • Brinjman, F.S.L.1    Fueyo, J.L.2
  • 28
    • 0033552961 scopus 로고    scopus 로고
    • Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
    • Alm RA, Ling LS, Moir DT, King BL, Brown ED, Doig PC, et al. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature. 1999;397:176-80.
    • (1999) Nature , vol.397 , pp. 176-180
    • Alm, R.A.1    Ling, L.S.2    Moir, D.T.3    King, B.L.4    Brown, E.D.5    Doig, P.C.6
  • 29
    • 0036791987 scopus 로고    scopus 로고
    • Genetic variation between Helicobacter pylori strains: Gene acquisition or loss?
    • García-Vallvé S, Janssen P, Ouzounis CA. Genetic variation between Helicobacter pylori strains: gene acquisition or loss? Trends Microbiol. 2002;10:445-7.
    • (2002) Trends Microbiol , vol.10 , pp. 445-447
    • García-Vallvé, S.1    Janssen, P.2    Ouzounis, C.A.3
  • 32
    • 3142740663 scopus 로고    scopus 로고
    • Comparative Genomics
    • Hardison RC. Comparative Genomics. PLoS Biol. 2003;1:e58.
    • (2003) PLoS Biol , vol.1
    • Hardison, R.C.1
  • 33
    • 0036175276 scopus 로고    scopus 로고
    • The past, present and future of genome-wide re-annotation. Genome Biol
    • 3:COMMENT2001
    • Ouzounis CA, Karp PD. The past, present and future of genome-wide re-annotation. Genome Biol. 2002;3:COMMENT2001.
    • (2002)
    • Ouzounis, C.A.1    Karp, P.D.2
  • 35
    • 0033119399 scopus 로고    scopus 로고
    • Errors in genome annotation
    • Brenner SE. Errors in genome annotation. Trends Genet. 1999;15:132-33.
    • (1999) Trends Genet , vol.15 , pp. 132-133
    • Brenner, S.E.1
  • 36
    • 33646916591 scopus 로고    scopus 로고
    • Shine-Dalgarno sequence locations exposes genome annotation errors
    • Starmer J, Stomp A, Vouk M, Bitzer D. Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput Biol. 2006;2:e57.
    • (2006) PLoS Comput Biol , vol.2
    • Starmer, J.1    Stomp, A.2    Vouk, M.3    Bitzer, D.4
  • 37
    • 28044463174 scopus 로고    scopus 로고
    • Genometrics as an essential tool for the assembly of whole genome sequences: The example of the chromosome of Bifidobacterium longum NCC2705
    • Guy L, Karamata D, Moreillon P, Roten CA. Genometrics as an essential tool for the assembly of whole genome sequences: the example of the chromosome of Bifidobacterium longum NCC2705. BMC Microbiol. 2005;5:60.
    • (2005) BMC Microbiol , vol.5 , pp. 60
    • Guy, L.1    Karamata, D.2    Moreillon, P.3    Roten, C.A.4
  • 38
    • 0035424599 scopus 로고    scopus 로고
    • Intrinsic errors in genome annotation
    • Devos D, Valencia A. Intrinsic errors in genome annotation. Trends Genet. 2001;17:429-31.
    • (2001) Trends Genet , vol.17 , pp. 429-431
    • Devos, D.1    Valencia, A.2
  • 44
    • 33646063776 scopus 로고    scopus 로고
    • Predicted highly expressed genes in Nocardia farcinica and the implication for its primary metabolism and nocardial virulence
    • Wu G, Nie L, Zhang W. Predicted highly expressed genes in Nocardia farcinica and the implication for its primary metabolism and nocardial virulence. Antonie Van Leeuwenhoek. 2006;89:135-46.
    • (2006) Antonie Van Leeuwenhoek , vol.89 , pp. 135-146
    • Wu, G.1    Nie, L.2    Zhang, W.3
  • 48
    • 29644440605 scopus 로고    scopus 로고
    • Antigen discovery: A postgenomic approach to leprosy diagnosis
    • Araoz R, Honore N, Cho S, Kim JP, Cho SN, Monot M, et al. Antigen discovery: a postgenomic approach to leprosy diagnosis. Infect Immun. 2006;74:175-82.
    • (2006) Infect Immun , vol.74 , pp. 175-182
    • Araoz, R.1    Honore, N.2    Cho, S.3    Kim, J.P.4    Cho, S.N.5    Monot, M.6
  • 49
    • 0035399931 scopus 로고    scopus 로고
    • Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes
    • Karlin S. Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes. Trends Microbiol. 2001;9:335-43.
    • (2001) Trends Microbiol , vol.9 , pp. 335-343
    • Karlin, S.1
  • 51
    • 33745659436 scopus 로고    scopus 로고
    • Conserved genes in a path from commensalism to pathogenicity: Comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228
    • Wei W, Cao Z, Zhu YL, Wang X, Ding G, Xu H, et al. Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228. BMC Genomics. 2006;7:112.
    • (2006) BMC Genomics , vol.7 , pp. 112
    • Wei, W.1    Cao, Z.2    Zhu, Y.L.3    Wang, X.4    Ding, G.5    Xu, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.