-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle WF (1999) Phylogenetic classification and the universal tree. Science 284:2124-2129
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
5
-
-
0033669672
-
Horizontal gene transfer among microbial genomes: New insights from complete genome analysis
-
Eisen JA (2000) Horizontal gene transfer among microbial genomes: New insights from complete genome analysis. Curr Opin Genet Dev 10:606-611
-
(2000)
Curr Opin Genet Dev
, vol.10
, pp. 606-611
-
-
Eisen, J.A.1
-
6
-
-
0026625218
-
Nuclear-encoded chloroplast ribosomal protein L27 of Nicotiana tabacum: cDNA sequence and analysis of mRNA and genes
-
Elhag GA, Bourque DP (1992) Nuclear-encoded chloroplast ribosomal protein L27 of Nicotiana tabacum: cDNA sequence and analysis of mRNA and genes. Biochemistry 31:6856-6864
-
(1992)
Biochemistry
, vol.31
, pp. 6856-6864
-
-
Elhag, G.A.1
Bourque, D.P.2
-
7
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Felsenstein J (1988) Phylogenies from molecular sequences: Inference and reliability. Annu Rev Genet 22:521-565
-
(1988)
Annu Rev Genet
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
8
-
-
0032870331
-
Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis
-
Garcia-Vallve S, Palau J, Romeu A (1999) Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis. Mol Biol Evol 9:1125-1134
-
(1999)
Mol Biol Evol
, vol.9
, pp. 1125-1134
-
-
Garcia-Vallve, S.1
Palau, J.2
Romeu, A.3
-
9
-
-
0033995545
-
Horizontal gene transfer of glycosyl hydrolases of the rumen fungi
-
Garcia-Vallve S, Romeu A, Palau J (2000a) Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol Biol Evol 17:352-361
-
(2000)
Mol Biol Evol
, vol.17
, pp. 352-361
-
-
Garcia-Vallve, S.1
Romeu, A.2
Palau, J.3
-
10
-
-
0033670249
-
Horizontal gene transfer in bacterial and archaeal complete genomes
-
Garcia-Vallve S, Romeu A, Palau J (2000b) Horizontal gene transfer in bacterial and archaeal complete genomes. Genet Res 10:1719-1725
-
(2000)
Genet Res
, vol.10
, pp. 1719-1725
-
-
Garcia-Vallve, S.1
Romeu, A.2
Palau, J.3
-
12
-
-
0034882455
-
Intragenomic base content is a potential source of biases when searching for horizontally transferred genes
-
Guindon S, Perriere G (2001) Intragenomic base content is a potential source of biases when searching for horizontally transferred genes. Mol Biol Evol 18:1838-1840
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1838-1840
-
-
Guindon, S.1
Perriere, G.2
-
13
-
-
0033616714
-
Horizontal gene transfer among genomes: The complexity hypothesis
-
Jain R, Rivera MC, Lake JA (1999) Horizontal gene transfer among genomes: The complexity hypothesis. Proc Natl Acad Sci USA 96:3801-3806
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3801-3806
-
-
Jain, R.1
Rivera, M.C.2
Lake, J.A.3
-
14
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: Quantification and classification
-
Koonin EV, Makarova KS, Aravind L (2001) Horizontal gene transfer in prokaryotes: Quantification and classification. Annu Rev Microbiol 55:709-742
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
15
-
-
0035099964
-
Codon bias and base composition are poor indicators of horizontally transferred genes
-
Koski LB, Morton RA, Golding GB (2001) Codon bias and base composition are poor indicators of horizontally transferred genes. Mol Biol Evol 18:404-412
-
(2001)
Mol Biol Evol
, vol.18
, pp. 404-412
-
-
Koski, L.B.1
Morton, R.A.2
Golding, G.B.3
-
16
-
-
0030731108
-
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
-
Kunst F, Ogasawara N, Moszer I, et al. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390:249-256
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
-
17
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
Lawrence JG, Ochman H (1997) Amelioration of bacterial genomes: Rates of change and exchange. J Mol Evol 44:383-397
-
(1997)
J Mol Evol
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
18
-
-
0029847554
-
Selfish operons: Horizontal transfer may drive the evolution of gene clusters
-
Lawrence JG, Roth JR (1996) Selfish operons: Horizontal transfer may drive the evolution of gene clusters. Genetics 143:1843-1860
-
(1996)
Genetics
, vol.143
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
19
-
-
0035225012
-
Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins
-
research 0033.1 Genome Biology is an electronic publication
-
Makarova KS, Ponomarev VA, Koonin EV (2001) Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol 2(9): research 0033.1 Genome Biology is an electronic publication (www.genomebiology.com)
-
(2001)
Genome Biol
, vol.2
, Issue.9
-
-
Makarova, K.S.1
Ponomarev, V.A.2
Koonin, E.V.3
-
20
-
-
0031803521
-
The three-dimensional structure of the ribosome and its components
-
Moore PB (1998) The three-dimensional structure of the ribosome and its components. Annu Rev Biophys Biomol Struct 27:35-58
-
(1998)
Annu Rev Biophys Biomol Struct
, vol.27
, pp. 35-58
-
-
Moore, P.B.1
-
21
-
-
0032560491
-
The complete genome of Bacillus subtilis: From sequence annotation to data management and analysis
-
Moszer I (1998) The complete genome of Bacillus subtilis: From sequence annotation to data management and analysis. FEBS Lett 430:28-36
-
(1998)
FEBS Lett
, vol.430
, pp. 28-36
-
-
Moszer, I.1
-
22
-
-
0027251385
-
Cloning and sequencing of the sarcosine oxidase gene from Arthrobacter sp. TE1826
-
Nishida Y, Imanaka T (1993) Cloning and sequencing of the sarcosine oxidase gene from Arthrobacter sp. TE1826. J Ferment Bioeng 75:239-244
-
(1993)
J Ferment Bioeng
, vol.75
, pp. 239-244
-
-
Nishida, Y.1
Imanaka, T.2
-
23
-
-
0031960956
-
Gene cluster for creatinine degradation in Arthrobacter sp. TE1826
-
Nishiya Y, Toda A, Imanaka T (1998) Gene cluster for creatinine degradation in Arthrobacter sp. TE1826. Mol Gen Genet 257:581-586
-
(1998)
Mol Gen Genet
, vol.257
, pp. 581-586
-
-
Nishiya, Y.1
Toda, A.2
Imanaka, T.3
-
24
-
-
0021296790
-
The control of ribosome synthesis
-
Nomura M (1984) The control of ribosome synthesis. Sci Am 250:102-114
-
(1984)
Sci Am
, vol.250
, pp. 102-114
-
-
Nomura, M.1
-
25
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H, Lawrence JG, Groisman EA (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
26
-
-
0034327380
-
Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
-
Takami H, Nakasone K, Takaki Y, et al. (2000) Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. Nucleic Acids Res 28:4317-4331
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4317-4331
-
-
Takami, H.1
Nakasone, K.2
Takaki, Y.3
-
27
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV (2001) The COG database: New developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29:22-28
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
28
-
-
0027968068
-
CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
0034872741
-
Limitations of compositional approach to identifying horizontally transferred genes
-
Wang B (2001) Limitations of compositional approach to identifying horizontally transferred genes. J Mol Evol 53:244-250
-
(2001)
J Mol Evol
, vol.53
, pp. 244-250
-
-
Wang, B.1
|