메뉴 건너뛰기




Volumn 15, Issue 6, 2005, Pages 584-588

Common themes in the genome strategies of pathogens

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENE; EUKARYOTE; GENE DELETION; GENE LOSS; GENE TRANSFER; GENETIC CODE; GENOMICS; NEISSERIA GONORRHOEAE; NEISSERIA LACTAMICA; NEISSERIA MENINGITIDIS; NONHUMAN; PECTOBACTERIUM CAROTOVORUM; PRIORITY JOURNAL; REVIEW; SALMONELLA ENTERICA; STAPHYLOCOCCUS AUREUS; VIBRIO PARAHAEMOLYTICUS;

EID: 27444441247     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gde.2005.09.007     Document Type: Review
Times cited : (70)

References (50)
  • 2
    • 10344224043 scopus 로고    scopus 로고
    • Phenotypic differences between Salmonella and Escherichia coli resulting from the disparate regulation of homologous genes
    • M.D. Winfield, and E.A. Groisman Phenotypic differences between Salmonella and Escherichia coli resulting from the disparate regulation of homologous genes Proc Natl Acad Sci USA 101 2004 17162 17167 The authors report that the dramatic differences between the Escherichia coli and Salmonella enteric pmrD homologues have resulted in the ability of the iron-responsive PmrAB system to respond to low magnesium concentrations through the PhoPQ-regulated PmrD.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17162-17167
    • Winfield, M.D.1    Groisman, E.A.2
  • 4
    • 0030091189 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • J. Davies Origins and evolution of antibiotic resistance Microbiologia 12 1996 9 16
    • (1996) Microbiologia , vol.12 , pp. 9-16
    • Davies, J.1
  • 5
    • 0033758756 scopus 로고    scopus 로고
    • Pathogenicity islands and the evolution of microbes
    • J. Hacker, and J.B. Kaper Pathogenicity islands and the evolution of microbes Annu Rev Microbiol 54 2000 641 679
    • (2000) Annu Rev Microbiol , vol.54 , pp. 641-679
    • Hacker, J.1    Kaper, J.B.2
  • 6
    • 2442674450 scopus 로고    scopus 로고
    • Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence
    • M.N. Yap, J.D. Barak, and A.O. Charkowski Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence Appl Environ Microbiol 70 2004 3013 3023
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3013-3023
    • Yap, M.N.1    Barak, J.D.2    Charkowski, A.O.3
  • 8
    • 15044363888 scopus 로고    scopus 로고
    • The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen
    • C.H. Chiu, P. Tang, C. Chu, S. Hu, Q. Bao, J. Yu, Y.Y. Chou, H.S. Wang, and Y.S. Lee The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen Nucleic Acids Res 33 2005 1690 1698
    • (2005) Nucleic Acids Res , vol.33 , pp. 1690-1698
    • Chiu, C.H.1    Tang, P.2    Chu, C.3    Hu, S.4    Bao, Q.5    Yu, J.6    Chou, Y.Y.7    Wang, H.S.8    Lee, Y.S.9
  • 9
    • 20144372744 scopus 로고    scopus 로고
    • Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
    • S.R. Gill, D.E. Fouts, G.L. Archer, E.F. Mongodin, R.T. Deboy, J. Ravel, I.T. Paulsen, J.F. Kolonay, L. Brinkac, and M. Beanan Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain J Bacteriol 187 2005 2426 2438
    • (2005) J Bacteriol , vol.187 , pp. 2426-2438
    • Gill, S.R.1    Fouts, D.E.2    Archer, G.L.3    Mongodin, E.F.4    Deboy, R.T.5    Ravel, J.6    Paulsen, I.T.7    Kolonay, J.F.8    Brinkac, L.9    Beanan, M.10
  • 11
    • 2942587260 scopus 로고    scopus 로고
    • A plant natriuretic peptide-like gene in the bacterial pathogen Xanthomonas axonopodis may induce hyper-hydration in the plant host: A hypothesis of molecular mimicry
    • V. Nembaware, C. Seoighe, M. Sayed, and C. Gehring A plant natriuretic peptide-like gene in the bacterial pathogen Xanthomonas axonopodis may induce hyper-hydration in the plant host: a hypothesis of molecular mimicry BMC Evol Biol 4 2004 10
    • (2004) BMC Evol Biol , vol.4 , pp. 10
    • Nembaware, V.1    Seoighe, C.2    Sayed, M.3    Gehring, C.4
  • 13
    • 22144486947 scopus 로고    scopus 로고
    • Fuzzy species among recombinogenic bacteria
    • W.P. Hanage, C. Fraser, and B.G. Spratt Fuzzy species among recombinogenic bacteria BMC Biol 3 2005 6
    • (2005) BMC Biol , vol.3 , pp. 6
    • Hanage, W.P.1    Fraser, C.2    Spratt, B.G.3
  • 14
    • 1642417542 scopus 로고    scopus 로고
    • Strong positive selection and recombination drive the antigenic variation of the PilE protein of the human pathogen Neisseria meningitidis
    • T.D. Andrews, and T. Gojobori Strong positive selection and recombination drive the antigenic variation of the PilE protein of the human pathogen Neisseria meningitidis Genetics 166 2004 25 32
    • (2004) Genetics , vol.166 , pp. 25-32
    • Andrews, T.D.1    Gojobori, T.2
  • 15
    • 4644259956 scopus 로고    scopus 로고
    • Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing
    • W.G. Qiu, S.E. Schutzer, J.F. Bruno, O. Attie, Y. Xu, J.J. Dunn, C.M. Fraser, S.R. Casjens, and B.J. Luft Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing Proc Natl Acad Sci USA 101 2004 14150 14155 Draft sequences of two Borrelia genomes were compared with the available complete genome to identify regions under positive selection for variability. Data from further clinical isolates establish recombination as a dominant force in Borrelia population genetics, with previous conclusions of clonality attributed to sampling bias.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 14150-14155
    • Qiu, W.G.1    Schutzer, S.E.2    Bruno, J.F.3    Attie, O.4    Xu, Y.5    Dunn, J.J.6    Fraser, C.M.7    Casjens, S.R.8    Luft, B.J.9
  • 16
    • 1542409039 scopus 로고    scopus 로고
    • Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing
    • N.R. Chowdhury, O.C. Stine, J.G. Morris, and G.B. Nair Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing J Clin Microbiol 42 2004 1280 1282
    • (2004) J Clin Microbiol , vol.42 , pp. 1280-1282
    • Chowdhury, N.R.1    Stine, O.C.2    Morris, J.G.3    Nair, G.B.4
  • 18
    • 2942586806 scopus 로고    scopus 로고
    • Evolution of multi-resistance plasmids in Australian clinical isolates of Escherichia coli
    • M. Sherley, D.M. Gordon, and P.J. Collignon Evolution of multi-resistance plasmids in Australian clinical isolates of Escherichia coli Microbiology 150 2004 1539 1546
    • (2004) Microbiology , vol.150 , pp. 1539-1546
    • Sherley, M.1    Gordon, D.M.2    Collignon, P.J.3
  • 19
    • 0032777154 scopus 로고    scopus 로고
    • Insights into the evolutionary process of genome degradation
    • J.O. Andersson, and S.G. Andersson Insights into the evolutionary process of genome degradation Curr Opin Genet Dev 9 1999 664 671
    • (1999) Curr Opin Genet Dev , vol.9 , pp. 664-671
    • Andersson, J.O.1    Andersson, S.G.2
  • 21
    • 0035189585 scopus 로고    scopus 로고
    • Pathoadaptive mutations that enhance virulence: Genetic organization of the cadA regions of Shigella spp
    • W.A. Day Jr., R.E. Fernandez, and A.T. Maurelli Pathoadaptive mutations that enhance virulence: genetic organization of the cadA regions of Shigella spp Infect Immun 69 2001 7471 7480
    • (2001) Infect Immun , vol.69 , pp. 7471-7480
    • Day Jr., W.A.1    Fernandez, R.E.2    Maurelli, A.T.3
  • 22
    • 21144469747 scopus 로고    scopus 로고
    • The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation
    • N.R. Thomson, C. Yeats, K. Bell, M.T. Holden, S.D. Bentley, M. Livingstone, A.M. Cerdeno-Tarraga, B. Harris, J. Doggett, and D. Ormond The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation Genome Res 15 2005 629 640 Comparison of the Chlamydophila abortus genome with those of congeners shows no evidence for lateral transfer in these intracellular pathogens, but plasticity is evident in pseudogenes affecting various metabolic pathways and production of membrane proteins.
    • (2005) Genome Res , vol.15 , pp. 629-640
    • Thomson, N.R.1    Yeats, C.2    Bell, K.3    Holden, M.T.4    Bentley, S.D.5    Livingstone, M.6    Cerdeno-Tarraga, A.M.7    Harris, B.8    Doggett, J.9    Ormond, D.10
  • 23
    • 11144356962 scopus 로고    scopus 로고
    • Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains
    • A.G. Tsolaki, A.E. Hirsh, K. DeRiemer, J.A. Enciso, M.Z. Wong, M. Hannan, Y.O. Goguet de la Salmoniere, K. Aman, M. Kato-Maeda, and P.M. Small Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains Proc Natl Acad Sci USA 101 2004 4865 4870 Microarray analysis of hundreds of clinical isolates of Mycobacterium tuberculosis shows widespread gene-loss affecting all classes of genes, including those involved basic metabolic functions in addition to those encoding membrane proteins, suggesting that gene loss might be more prevalent in this organism than was suspect.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4865-4870
    • Tsolaki, A.G.1    Hirsh, A.E.2    Deriemer, K.3    Enciso, J.A.4    Wong, M.Z.5    Hannan, M.6    Goguet De La Salmoniere, Y.O.7    Aman, K.8    Kato-Maeda, M.9    Small, P.M.10
  • 25
    • 0027337721 scopus 로고
    • The absence of a surface protease, OmpT, determines the intercellular spreading ability of Shigella: The relationship between the ompT and kcpA loci
    • N. Nakata, T. Tobe, I. Fukuda, T. Suzuki, K. Komatsu, M. Yoshikawa, and C. Sasakawa The absence of a surface protease, OmpT, determines the intercellular spreading ability of Shigella: the relationship between the ompT and kcpA loci Mol Microbiol 9 1993 459 468
    • (1993) Mol Microbiol , vol.9 , pp. 459-468
    • Nakata, N.1    Tobe, T.2    Fukuda, I.3    Suzuki, T.4    Komatsu, K.5    Yoshikawa, M.6    Sasakawa, C.7
  • 26
    • 3242742163 scopus 로고    scopus 로고
    • Genome diversity among regional populations of Francisella tularensis subspecies tularensis and Francisella tularensis subspecies holarctica isolated from the US
    • M.M. Samrakandi, C. Zhang, M. Zhang, J. Nietfeldt, J. Kim, P.C. Iwen, M.E. Olson, P.D. Fey, G.E. Duhamel, and S.H. Hinrichs Genome diversity among regional populations of Francisella tularensis subspecies tularensis and Francisella tularensis subspecies holarctica isolated from the US FEMS Microbiol Lett 237 2004 9 17
    • (2004) FEMS Microbiol Lett , vol.237 , pp. 9-17
    • Samrakandi, M.M.1    Zhang, C.2    Zhang, M.3    Nietfeldt, J.4    Kim, J.5    Iwen, P.C.6    Olson, M.E.7    Fey, P.D.8    Duhamel, G.E.9    Hinrichs, S.H.10
  • 27
    • 10844245355 scopus 로고    scopus 로고
    • Genome diversity of Pseudomonas aeruginosa isolates from cystic fibrosis patients and the hospital environment
    • S. Finnan, J.P. Morrissey, F. O'Gara, and E.F. Boyd Genome diversity of Pseudomonas aeruginosa isolates from cystic fibrosis patients and the hospital environment J Clin Microbiol 42 2004 5783 5792
    • (2004) J Clin Microbiol , vol.42 , pp. 5783-5792
    • Finnan, S.1    Morrissey, J.P.2    O'Gara, F.3    Boyd, E.F.4
  • 28
    • 3843093939 scopus 로고    scopus 로고
    • Diverse evolutionary mechanisms shape the type III effector virulence factor repertoire in the plant pathogen Pseudomonas syringae
    • L. Rohmer, D.S. Guttman, and J.L. Dangl Diverse evolutionary mechanisms shape the type III effector virulence factor repertoire in the plant pathogen Pseudomonas syringae Genetics 167 2004 1341 1360
    • (2004) Genetics , vol.167 , pp. 1341-1360
    • Rohmer, L.1    Guttman, D.S.2    Dangl, J.L.3
  • 31
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • J.O. Andersson Lateral gene transfer in eukaryotes Cell Mol Life Sci 62 2005 1182 1197
    • (2005) Cell Mol Life Sci , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 32
    • 0037838657 scopus 로고    scopus 로고
    • Horizontal gene transfer and the evolution of parasitic protozoa
    • T.A. Richards, R.P. Hirt, B.A. Williams, and T.M. Embley Horizontal gene transfer and the evolution of parasitic protozoa Protist 154 2003 17 32
    • (2003) Protist , vol.154 , pp. 17-32
    • Richards, T.A.1    Hirt, R.P.2    Williams, B.A.3    Embley, T.M.4
  • 33
    • 0033995545 scopus 로고    scopus 로고
    • Horizontal gene transfer of glycosyl hydrolases of the rumen fungi
    • S. Garcia-Vallve, A. Romeu, and J. Palau Horizontal gene transfer of glycosyl hydrolases of the rumen fungi Mol Biol Evol 17 2000 352 361
    • (2000) Mol Biol Evol , vol.17 , pp. 352-361
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 34
    • 4043070561 scopus 로고    scopus 로고
    • An analysis of the phylogenetic distribution of the pea pathogenicity genes of Nectria haematococca MPVI supports the hypothesis of their origin by horizontal transfer and uncovers a potentially new pathogen of garden pea: Neocosmospora boniensis
    • E.D. Temporini, and H.D. VanEtten An analysis of the phylogenetic distribution of the pea pathogenicity genes of Nectria haematococca MPVI supports the hypothesis of their origin by horizontal transfer and uncovers a potentially new pathogen of garden pea: Neocosmospora boniensis Curr Genet 46 2004 29 36
    • (2004) Curr Genet , vol.46 , pp. 29-36
    • Temporini, E.D.1    Vanetten, H.D.2
  • 35
    • 0142153849 scopus 로고    scopus 로고
    • Bacterial catalase in the microsporidian Nosema locustae: Implications for microsporidian metabolism and genome evolution
    • N.M. Fast, J.S. Law, B.A. Williams, and P.J. Keeling Bacterial catalase in the microsporidian Nosema locustae: implications for microsporidian metabolism and genome evolution Eukaryot Cell 2 2003 1069 1075
    • (2003) Eukaryot Cell , vol.2 , pp. 1069-1075
    • Fast, N.M.1    Law, J.S.2    Williams, B.A.3    Keeling, P.J.4
  • 36
    • 2342602972 scopus 로고    scopus 로고
    • Presence of a bacterial-like citrate synthase gene in Tetrahymena thermophila: Recent lateral gene transfers (LGT) or multiple gene losses subsequent to a single ancient LGT?
    • A. Mukai, and H. Endoh Presence of a bacterial-like citrate synthase gene in Tetrahymena thermophila: recent lateral gene transfers (LGT) or multiple gene losses subsequent to a single ancient LGT? J Mol Evol 58 2004 540 549
    • (2004) J Mol Evol , vol.58 , pp. 540-549
    • Mukai, A.1    Endoh, H.2
  • 37
    • 10344246580 scopus 로고    scopus 로고
    • Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids
    • J.O. Andersson, S.W. Sarchfield, and A.J. Roger Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids Mol Biol Evol 22 2005 85 90
    • (2005) Mol Biol Evol , vol.22 , pp. 85-90
    • Andersson, J.O.1    Sarchfield, S.W.2    Roger, A.J.3
  • 39
    • 2942536494 scopus 로고    scopus 로고
    • The iron-sulfur cluster assembly genes iscS and iscU of Entamoeba histolytica were acquired by horizontal gene transfer
    • M. van der Giezen, S. Cox, and J. Tovar The iron-sulfur cluster assembly genes iscS and iscU of Entamoeba histolytica were acquired by horizontal gene transfer BMC Evol Biol 4 2004 7 Phylogenies of two iron-sulfur assembly proteins in the amitochondrial protist Entamoeba histolytica each cluster the Entamoeba protein with the ε-proteobacterial homologues, supporting both a bacterial origin for these proteins and one distinct from homologues in mitochondria-bearing eukaryotes.
    • (2004) BMC Evol Biol , vol.4 , pp. 7
    • Van Der Giezen, M.1    Cox, S.2    Tovar, J.3
  • 41
    • 22244441812 scopus 로고    scopus 로고
    • The genome of the African trypanosome Trypanosoma brucei
    • M. Berriman, E. Ghedin, C. Hertz-Fowler, G. Blandin, H. Renauld, D.C. Bartholomeu, N.J. Lennard, E. Caler, N.E. Hamlin, and B. Haas The genome of the African trypanosome Trypanosoma brucei Science 309 2005 416 422 The genome of Trypanosoma brucei uncovers not only a wealth of biology but evidence for the acquisition of dozens of genes from bacteria, including those involved in the electron transport chain and glycoprotein attachment, offering potential drug targets.
    • (2005) Science , vol.309 , pp. 416-422
    • Berriman, M.1    Ghedin, E.2    Hertz-Fowler, C.3    Blandin, G.4    Renauld, H.5    Bartholomeu, D.C.6    Lennard, N.J.7    Caler, E.8    Hamlin, N.E.9    Haas, B.10
  • 45
    • 2942743530 scopus 로고    scopus 로고
    • Genome compaction and stability in microsporidian intracellular parasites
    • C.H. Slamovits, N.M. Fast, J.S. Law, and P.J. Keeling Genome compaction and stability in microsporidian intracellular parasites Curr Biol 14 2004 891 896
    • (2004) Curr Biol , vol.14 , pp. 891-896
    • Slamovits, C.H.1    Fast, N.M.2    Law, J.S.3    Keeling, P.J.4
  • 46
    • 0034566380 scopus 로고    scopus 로고
    • Legionella pneumophila pathogesesis: A fateful journey from amoebae to macrophages
    • M.S. Swanson, and B.K. Hammer Legionella pneumophila pathogesesis: a fateful journey from amoebae to macrophages Annu Rev Microbiol 54 2000 567 613
    • (2000) Annu Rev Microbiol , vol.54 , pp. 567-613
    • Swanson, M.S.1    Hammer, B.K.2
  • 47
    • 0034547862 scopus 로고    scopus 로고
    • From protozoa to mammalian cells: A new paradigm in the life cycle of intracellular bacterial pathogens
    • O.S. Harb, L.Y. Gao, and Y. Abu Kwaik From protozoa to mammalian cells: a new paradigm in the life cycle of intracellular bacterial pathogens Environ Microbiol 2 2000 251 265
    • (2000) Environ Microbiol , vol.2 , pp. 251-265
    • Harb, O.S.1    Gao, L.Y.2    Abu Kwaik, Y.3
  • 49
    • 3242695831 scopus 로고    scopus 로고
    • Protozoan predation, diversifying selection and the evolution of antigenic diversity in Salmonella
    • H. Wildschutte, D.M. Wolfe, A. Tamewitz, and J.G. Lawrence Protozoan predation, diversifying selection and the evolution of antigenic diversity in Salmonella Proc Natl Acad Sci USA 101 2004 10644 10649 Salmonella bearing different O-antigen carbohydrates are able to escape predation by different sets of amoeboid predators, suggesting that variability at this virulence locus increases Salmonella fitness by enabling it to escape surveillance by predators, although not necessarily the immune system.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 10644-10649
    • Wildschutte, H.1    Wolfe, D.M.2    Tamewitz, A.3    Lawrence, J.G.4
  • 50
    • 15444363200 scopus 로고    scopus 로고
    • Enhanced survival of Salmonella enterica in vesicles released by a soilborne Tetrahymena species
    • M.T. Brandl, B.M. Rosenthal, A.F. Haxo, and S.G. Berk Enhanced survival of Salmonella enterica in vesicles released by a soilborne Tetrahymena species Appl Environ Microbiol 71 2005 1562 1569
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1562-1569
    • Brandl, M.T.1    Rosenthal, B.M.2    Haxo, A.F.3    Berk, S.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.