Positive histone marks are associated with active transcription from a methylated ICSBP/IRF8 gene

Gene

Volumn 410, Issue 2, 2008, Pages 259-267

  Tshuikina, Marina ^a   Nilsson, Kenneth ^a   Öberg, Fredrik ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

Acetylation; Chromatin; Epigenetic; Promoter; U 266; U 937

Indexed keywords

HISTONE; INTERFERON CONSENSUS SEQUENCE BINDING PROTEIN; RNA POLYMERASE II;

ARTICLE; CELL STRAIN U937; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DNA METHYLATION; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN MODIFICATION;

BASE SEQUENCE; CELL LINE; CHROMATIN IMMUNOPRECIPITATION; CPG ISLANDS; DNA METHYLATION; HISTONES; HUMANS; INTERFERON REGULATORY FACTORS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); RNA POLYMERASE II; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC;

EID: 39249083048     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.12.013     Document Type: Article

References (42)

1. Angrisano T., et al. TACC3 mediates the association of MBD2 with histone acetyltransferases and relieves transcriptional repression of methylated promoters. Nucleic Acids Res. 34 1 (2006) 364-372
2. Bird A.P., and Wolffe A.P. Methylation-induced repression-belts, braces, and chromatin. Cell 99 5 (1999) 451-454
3. Brinkman A.B., Pennings S.W., Braliou G.G., Rietveld L.E., and Stunnenberg H.G. DNA methylation immediately adjacent to active histone marking does not silence transcription. Nucleic Acids Res. 35 3 (2007) 801-811
4. Broxmeyer H.E., Piacibello W., Juliano L., Platzer E., Berman E., and Rubin B.Y. Gamma interferon induces colony-forming cells of the human monoblast cell line U937 to respond to inhibition by lactoferrin, transferrin, and acidic isoferritins. Exp. Hematol. 14 1 (1986) 35-43
5. Clayton A.L., Hazzalin C.A., and Mahadevan L.C. Enhanced histone acetylation and transcription: a dynamic perspective. Mol. Cell 23 3 (2006) 289-296
6. Costello J.F., et al. Aberrant CpG-island methylation has non-random and tumour-type-specific patterns. Nat. Genet. 24 2 (2000) 132-138
7. De Larco J.E., Wuertz B.R., Yee D., Rickert B.L., and Furcht L.T. Atypical methylation of the interleukin-8 gene correlates strongly with the metastatic potential of breast carcinoma cells. Proc. Natl. Acad. Sci. U. S. A. 100 24 (2003) 13988-13993
8. Dimberg A., Karehed K., Nilsson K., and Oberg F. Inhibition of monocytic differentiation by phosphorylation-deficient Stat1 is associated with impaired expression of Stat2, ICSBP/IRF8 and C/EBPepsilon. Scand. J. Immunol. 64 3 (2006) 271-279
9. Eden S., et al. An upstream repressor element plays a role in Igf2 imprinting. Embo J. 20 13 (2001) 3518-3525
10. Ego T., Tanaka Y., and Shimotohno K. Interaction of HTLV-1 Tax and methyl-CpG-binding domain 2 positively regulates the gene expression from the hypermethylated LTR. Oncogene 24 11 (2005) 1914-1923
11. Fischle W., Wang Y., and Allis C.D. Histone and chromatin cross-talk. Curr. Opin. Cell Biol. 15 2 (2003) 172-183
12. Gerber-Huber S., et al. In contrast to other Xenopus genes the estrogen-inducible vitellogenin genes are expressed when totally methylated. Cell 33 1 (1983) 43-51
13. Hao S.X., and Ren R. Expression of interferon consensus sequence binding protein (ICSBP) is downregulated in Bcr-Abl-induced murine chronic myelogenous leukemia-like disease, and forced coexpression of ICSBP inhibits Bcr-Abl-induced myeloproliferative disorder. Mol. Cell. Biol. 20 4 (2000) 1149-1161
14. Holtschke T., et al. Immunodeficiency and chronic myelogenous leukemia-like syndrome in mice with a targeted mutation of the ICSBP gene. Cell 87 2 (1996) 307-317
15. Huang W., Horvath E., and Eklund E.A. PU.1, interferon regulatory factor (IRF) 2, and the interferon consensus sequence-binding protein (ICSBP/IRF8) cooperate to activate NF1 transcription in differentiating myeloid cells. J. Biol. Chem. 282 9 (2007) 6629-6643
16. Hutchins A.S., et al. Gene silencing quantitatively controls the function of a developmental trans-activator. Mol. Cell 10 1 (2002) 81-91
17. Jaenisch R., and Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat. Genet. 33 Suppl (2003) 245-254
18. Jernberg-Wiklund H., and Nilsson K. Multiple Myeloma Cell Lines. In: Masters J.R.W., and Palsson B. (Eds). Human Cell Culture vol. III (2000), Kluwer Academic Publishers, Dordrecht, The Netherlands 81-155
19. Jones P.A., and Baylin S.B. The fundamental role of epigenetic events in cancer. Nat. Rev., Genet. 3 6 (2002) 415-428
20. Karpas A., Fisher P., and Swirsky D. Human plasmacytoma with an unusual karyotype growing in vitro and producing light-chain immunoglobulin. Lancet 1 8278 (1982) 931-933
21. Kouzarides T. Chromatin modifications and their function. Cell 128 4 (2007) 693-705
22. Lembo F., et al. MBDin, a novel MBD2-interacting protein, relieves MBD2 repression potential and reactivates transcription from methylated promoters. Mol. Cell. Biol. 23 5 (2003) 1656-1665
23. Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25 4 (2001) 402-408
24. Lu R., Medina K.L., Lancki D.W., and Singh H. IRF-4,8 orchestrate the pre-B-to-B transition in lymphocyte development. Genes Dev. 17 14 (2003) 1703-1708
25. Marsh S., King C.R., Garsa A.A., and McLeod H.L. Pyrosequencing of clinically relevant polymorphisms. Methods Mol. Biol. 311 (2005) 97-114
26. McKeon C., Ohkubo H., Pastan I., and de Crombrugghe B. Unusual methylation pattern of the alpha 2 (l) collagen gene. Cell 29 1 (1982) 203-210
27. Menezes J., Leibold W., Klein G., and Clements G. Establishment and characterization of an Epstein-Barr virus (EBC)-negative lymphoblastoid B cell line (BJA-B) from an exceptional, EBV-genome-negative African Burkitt's lymphoma. Biomedicine 22 4 (1975) 276-284
28. Moazed D. Common themes in mechanisms of gene silencing. Mol. Cell 8 3 (2001) 489-498
29. Niesen M.I., et al. Activation of a methylated promoter mediated by a sequence-specific DNA-binding protein, RFX. J. Biol. Chem. 280 47 (2005) 38914-38922
30. Nilsson K., Bennich H., Johansson S.G., and Ponten J. Established immunoglobulin producing myeloma (IgE) and lymphoblastoid (IgG) cell lines from an IgE myeloma patient. Clin. Exp. Immunol. 7 4 (1970) 477-489
31. Richards E.J., and Elgin S.C. Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects. Cell 108 4 (2002) 489-500
32. Ruthenburg A.J., Allis C.D., and Wysocka J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol. Cell 25 1 (2007) 15-30
33. Santos-Rosa H., et al. Active genes are tri-methylated at K4 of histone H3. Nature 419 6905 (2002) 407-411
34. Schiavoni G., et al. ICSBP is critically involved in the normal development and trafficking of Langerhans cells and dermal dendritic cells. Blood 103 6 (2004) 2221-2228
35. Schmidt M., et al. Lack of interferon consensus sequence binding protein (ICSBP) transcripts in human myeloid leukemias. Blood 91 1 (1998) 22-29
36. Sundstrom C., and Nilsson K. Establishment and characterization of a human histiocytic lymphoma cell line (U-937). Int. J. Cancer 17 5 (1976) 565-577
37. Tamura T., and Ozato K. ICSBP/IRF-8: its regulatory roles in the development of myeloid cells. J. Interferon Cytokine Res. 22 1 (2002) 145-152
38. Tamura T., Nagamura-Inoue T., Shmeltzer Z., Kuwata T., and Ozato K. ICSBP directs bipotential myeloid progenitor cells to differentiate into mature macrophages. Immunity 13 2 (2000) 155-165
39. Tamura T., et al. IFN regulatory factor-4 and -8 govern dendritic cell subset development and their functional diversity. J. Immunol. 174 5 (2005) 2573-2581
40. Tsujimura H., Tamura T., and Ozato K. Cutting edge: IFN consensus sequence binding protein/IFN regulatory factor 8 drives the development of type I IFN-producing plasmacytoid dendritic cells. J. Immunol. 170 3 (2003) 1131-1135
41. Unoki M., and Nakamura Y. Methylation at CpG islands in intron 1 of EGR2 confers enhancer-like activity. FEBS Lett. 554 1-2 (2003) 67-72
42. Vakoc C.R., Mandat S.A., Olenchock B.A., and Blobel G.A. Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. Mol. Cell 19 3 (2005) 381-391