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Volumn 219, Issue 1, 1996, Pages 170-178

Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE;

EID: 0030014666     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.0234     Document Type: Article
Times cited : (107)

References (51)
  • 2
    • 0023664801 scopus 로고
    • Identification by a random sequencing strategy of the fowlpox virus DNA polymerase gene, its nucleotide sequence and comparison with other viral DNA polymerases
    • Binns, M. M., Stenzler, L. Tomley, F. M., Campbell, J., and Boursnell, M. E. (1987). Identification by a random sequencing strategy of the fowlpox virus DNA polymerase gene, its nucleotide sequence and comparison with other viral DNA polymerases. Nucleic Acids Res. 15, 6563-6573.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 6563-6573
    • Binns, M.M.1    Stenzler, L.2    Tomley, F.M.3    Campbell, J.4    Boursnell, M.E.5
  • 3
    • 0027079948 scopus 로고
    • Characterization of the nucleotide sequence of the Lymantria dispar nuclear polyhedrosis virus DNA polymerase gene region
    • Bjornson, R. M., Glocker, B., and Rochrmann, G. F. (1992). Characterization of the nucleotide sequence of the Lymantria dispar nuclear polyhedrosis virus DNA polymerase gene region. J Gen. Virol. 73, 3177-3183.
    • (1992) J Gen. Virol. , vol.73 , pp. 3177-3183
    • Bjornson, R.M.1    Glocker, B.2    Rochrmann, G.F.3
  • 4
    • 0027217643 scopus 로고
    • Compilation, alignment, and phylogenetic relationships of DNA polymerases
    • Braithwaite, D. K., and Ito, J. (1993). Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 21, 787-802.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 787-802
    • Braithwaite, D.K.1    Ito, J.2
  • 5
    • 0027804112 scopus 로고
    • Viral mortality of the marine alga Emiliania huxleyi (Haptophyceae) and termination of algal blooms
    • Bratbak, G., Egge, J. K., and Heldal, M. (1993). Viral mortality of the marine alga Emiliania huxleyi (Haptophyceae) and termination of algal blooms. Mar. Ecol. Prog. Ser. 93, 39-48.
    • (1993) Mar. Ecol. Prog. Ser. , vol.93 , pp. 39-48
    • Bratbak, G.1    Egge, J.K.2    Heldal, M.3
  • 6
    • 0022458402 scopus 로고
    • The classification and nomenclature of viruses: Summary of results of meetings of the International Committee of Taxonomy of Viruses in Senday, September 1984
    • Brown, F. (1986). The classification and nomenclature of viruses: Summary of results of meetings of the International Committee of Taxonomy of Viruses in Senday, September 1984. Intervirology 25, 141-143.
    • (1986) Intervirology , vol.25 , pp. 141-143
    • Brown, F.1
  • 7
    • 0021943866 scopus 로고
    • Supercoil sequencing: A fast and simple method for sequencing plasmid DNA
    • Chen, E. Y., and Seeburg, P. H. (1985). Supercoil sequencing: A fast and simple method for sequencing plasmid DNA. DNA 4, 165-170.
    • (1985) DNA , vol.4 , pp. 165-170
    • Chen, E.Y.1    Seeburg, P.H.2
  • 8
    • 0028964507 scopus 로고
    • Amplification of DNA polymerase gene fragments from viruses infecting microalgae
    • Chen, F., and Suttle, C. A. (1995a). Amplification of DNA polymerase gene fragments from viruses infecting microalgae. Appl. Environ. Microbiol. 61, 1274-1278.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1274-1278
    • Chen, F.1    Suttle, C.A.2
  • 9
    • 0028907054 scopus 로고
    • Nested PCRwith three highly degenerate primers for amplification and identification of DNA from related organisms
    • Chen, F., and Suttle, C. A. (1995b). Nested PCRwith three highly degenerate primers for amplification and identification of DNA from related organisms. BioTechniques 18, 609-612.
    • (1995) BioTechniques , vol.18 , pp. 609-612
    • Chen, F.1    Suttle, C.A.2
  • 10
    • 0001672352 scopus 로고
    • (G. Darai, Ed.), Kluwer Academic, Boston, MA
    • Costa, J. V. (1990). In "Molecular Biology of Iridoviruses" (G. Darai, Ed.), pp. 247-270. Kluwer Academic, Boston, MA
    • (1990) Molecular Biology of Iridoviruses , pp. 247-270
    • Costa, J.V.1
  • 11
    • 0026314636 scopus 로고
    • Wide-spread occurrence and clonal variation in viruses which cause lysis of a cosmopolitan, eukaryotic marine phytoplankter, Micromonas pusilla
    • Cottrell, M. T., and Suttle, C. A. (1991). Wide-spread occurrence and clonal variation in viruses which cause lysis of a cosmopolitan, eukaryotic marine phytoplankter, Micromonas pusilla. Mar. Ecol. Prog. Ser. 78, 1-9.
    • (1991) Mar. Ecol. Prog. Ser. , vol.78 , pp. 1-9
    • Cottrell, M.T.1    Suttle, C.A.2
  • 12
    • 0029117677 scopus 로고
    • Genetic diversity of algal viruses which lyse the marine photosynthetic flagellate Micromonas pusilla (Prasinophyceae)
    • Cottrell, M. T., and Suttle, C. A. (1995). Genetic diversity of algal viruses which lyse the marine photosynthetic flagellate Micromonas pusilla (Prasinophyceae). Appl. Environ. Microbiol. 61, 3088-3091.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3088-3091
    • Cottrell, M.T.1    Suttle, C.A.2
  • 13
    • 0027946873 scopus 로고
    • Nucleotide sequence of the polyhedrin gene region of the Helicoverpa zea single nucleocapsid nuclear polyhedrosis virus: Placement of the virus in lepidopteran nuclear polyhedrosis virus group II
    • Cowan, P., Bulach, D., Goodge, K., Robertson, A., and Tribe, D. E. (1994). Nucleotide sequence of the polyhedrin gene region of the Helicoverpa zea single nucleocapsid nuclear polyhedrosis virus: Placement of the virus in lepidopteran nuclear polyhedrosis virus group II. J Gen. Virol. 75, 3211-3218.
    • (1994) J Gen. Virol. , vol.75 , pp. 3211-3218
    • Cowan, P.1    Bulach, D.2    Goodge, K.3    Robertson, A.4    Tribe, D.E.5
  • 14
    • 0022487151 scopus 로고
    • The complete DNA sequence of varicella-zoster virus
    • Davison, A. J., and Scott, J. E. (1986). The complete DNA sequence of varicella-zoster virus. J. Gen. Virol. 67, 1759-1816.
    • (1986) J. Gen. Virol. , vol.67 , pp. 1759-1816
    • Davison, A.J.1    Scott, J.E.2
  • 15
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • (M. O. Dayhoff, Ed.), Natl. Biomed. Res. Found., Silver Springs, MD
    • Dayhoff, M. O., Schwartz, R. M., and Orcutt, B. C. (1978). A model of evolutionary change in proteins. In "Atlas of Protein Sequence and Structure" (M. O. Dayhoff, Ed.), Vol. 5, Suppl. 3, pp. 345-352. Natl. Biomed. Res. Found., Silver Springs, MD.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL. 3 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 16
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., Haeberli, P., and Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12, 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 17
    • 0022457141 scopus 로고
    • Homology between DNA polymerase of poxviruses, herpesviruses, and adenoviruses: Nucleotide sequence of the vaccinia virus DNA polymerase gene
    • Earl, P. L., Jones, E. V., and Moss, B. (1986). Homology between DNA polymerase of poxviruses, herpesviruses, and adenoviruses: Nucleotide sequence of the vaccinia virus DNA polymerase gene. Proc. Acad. Natl. Sci. USA 83, 3659-3663.
    • (1986) Proc. Acad. Natl. Sci. USA , vol.83 , pp. 3659-3663
    • Earl, P.L.1    Jones, E.V.2    Moss, B.3
  • 18
    • 0026044774 scopus 로고
    • Transcription analysis and sequence of the putative Murine cytomegalovirus DNA polymerase gene
    • Elliot, R., Clark, C., Jaquish, D., and Spector, D. H. (1991). Transcription analysis and sequence of the putative Murine cytomegalovirus DNA polymerase gene. Virology 185, 169-186.
    • (1991) Virology , vol.185 , pp. 169-186
    • Elliot, R.1    Clark, C.2    Jaquish, D.3    Spector, D.H.4
  • 21
    • 0000357440 scopus 로고
    • Classification and nomenclature of viruses
    • Springer-Verlag, Vienna
    • Francki, R I. B., Fauguet, C. M., Knudson, D. L., and Brown, F. (1991). Classification and nomenclature of viruses. In "Archives of Virology," Suppl. 2. Springer-Verlag, Vienna.
    • (1991) Archives of Virology , Issue.SUPPL. 2
    • Francki, R.I.B.1    Fauguet, C.M.2    Knudson, D.L.3    Brown, F.4
  • 22
    • 0026658938 scopus 로고
    • The DNA polymerase gene from Chlorella viruses PBCV-1 and NY-2A contains an intron with nuclear splicing sequences
    • Grabherr, R., Strasser, P., and Van Etten, J. L. (1992). The DNA polymerase gene from Chlorella viruses PBCV-1 and NY-2A contains an intron with nuclear splicing sequences. Virology 188, 721-731.
    • (1992) Virology , vol.188 , pp. 721-731
    • Grabherr, R.1    Strasser, P.2    Van Etten, J.L.3
  • 23
    • 0026605537 scopus 로고
    • CLUSTAL V -improved software for multiple sequence alignment
    • Higgins, D. C., Bleasby, A. J., and Fuchs, R. (1992). CLUSTAL V -improved software for multiple sequence alignment. Comput. Appl. Biosci. 8, 189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.C.1    Bleasby, A.J.2    Fuchs, R.3
  • 24
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • Hillis, D. M., and Huelsenbeck, J. P. (1992). Signal, noise, and reliability in molecular phylogenetic analyses. J. Heredity. 83, 189-195.
    • (1992) J. Heredity , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 25
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H. N. Munro, Ed.), Academic Press, New York
    • Jukes, T. H., and Cantor, C. R. (1969). Evolution of protein molecules. In "Mammalian Protein Metabolism" (H. N. Munro, Ed.), pp. 21-132. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 26
    • 0023518277 scopus 로고
    • Bacteriophage PRD1 DNA polymerase: Evolution of DNA polymerases
    • Jung, G. H., Leavitt, M. C., Hsieh, J. C., and Ito, J. (1987). Bacteriophage PRD1 DNA polymerase: Evolution of DNA polymerases. Proc. Natl. Acad. Sci. USA 84, 8287-8291.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 8287-8291
    • Jung, G.H.1    Leavitt, M.C.2    Hsieh, J.C.3    Ito, J.4
  • 27
    • 0023239771 scopus 로고
    • Sequence and transcription analysis of the human cytomegalovirus DNA polymerase gene
    • Kouzarides, T., Bankier, A. T., Satchwell, S. C., and Weston, K. (1987). Sequence and transcription analysis of the human cytomegalovirus DNA polymerase gene. J. Virol. 61, 125-133.
    • (1987) J. Virol. , vol.61 , pp. 125-133
    • Kouzarides, T.1    Bankier, A.T.2    Satchwell, S.C.3    Weston, K.4
  • 29
    • 0023081808 scopus 로고
    • Related functional domains in virus DNA polymerases
    • Larder, B. A., Kemp, S. D., and Darby, G. (1987). Related functional domains in virus DNA polymerases. EMBO J. 6, 169-175.
    • (1987) EMBO J. , vol.6 , pp. 169-175
    • Larder, B.A.1    Kemp, S.D.2    Darby, G.3
  • 30
    • 0025982062 scopus 로고
    • Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
    • Marchuk, D., Drumm, M., Sauline, A., and Collins, F. (1991). Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res. 19, 1154.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1154
    • Marchuk, D.1    Drumm, M.2    Sauline, A.3    Collins, F.4
  • 31
    • 0028260414 scopus 로고
    • Genetic identification and nucleotide sequence of the DNA polymerase gene of African swine fever virus
    • Martins, A., Rbeiro, G., Marques, M. I., and Costa, J. V. (1994). Genetic identification and nucleotide sequence of the DNA polymerase gene of African swine fever virus. Nucleic Acids Res. 22, 208-213.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 208-213
    • Martins, A.1    Rbeiro, G.2    Marques, M.I.3    Costa, J.V.4
  • 32
    • 0026290812 scopus 로고
    • Identification and sequencing of the Choristoneura biennis entomopoxvirus DNA polymerase gene
    • Mustafa, A., and Yuen, L. (1991). Identification and sequencing of the Choristoneura biennis entomopoxvirus DNA polymerase gene. DNA Seq. 2, 39-45.
    • (1991) DNA Seq. , vol.2 , pp. 39-45
    • Mustafa, A.1    Yuen, L.2
  • 33
    • 0026502148 scopus 로고
    • Phylogenetic relationships of linear, protein-primed replicating genomes
    • Rohe, M., Schrunder, J., Tudzynski, P., and Meinhardt, F. (1992). Phylogenetic relationships of linear, protein-primed replicating genomes. Curr. Genet. 21, 173-176.
    • (1992) Curr. Genet. , vol.21 , pp. 173-176
    • Rohe, M.1    Schrunder, J.2    Tudzynski, P.3    Meinhardt, F.4
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 36
    • 0027998619 scopus 로고
    • Cloning and characterization of the guinea pig cytomegalovirus glycoprotein B gene
    • Schleiss, M. R. (1994). Cloning and characterization of the guinea pig cytomegalovirus glycoprotein B gene. Virology 202, 173-185.
    • (1994) Virology , vol.202 , pp. 173-185
    • Schleiss, M.R.1
  • 38
    • 0000097970 scopus 로고
    • The significance of viruses to mortality in aquatic microbial communities
    • Suttle, C. A. (1994). The significance of viruses to mortality in aquatic microbial communities. Microbial Ecol. 28, 237-243.
    • (1994) Microbial Ecol. , vol.28 , pp. 237-243
    • Suttle, C.A.1
  • 39
    • 0028992765 scopus 로고
    • Viruses infecting the marine Prymnesiophyte Chrysochromulina spp.: Isolation, preliminary characterization and natural abundance
    • Suttle, C. A., and Chan, A. M. (1995). Viruses infecting the marine Prymnesiophyte Chrysochromulina spp.: Isolation, preliminary characterization and natural abundance. Mar. Ecol. Prog. Ser. 118, 275-282.
    • (1995) Mar. Ecol. Prog. Ser. , vol.118 , pp. 275-282
    • Suttle, C.A.1    Chan, A.M.2
  • 40
    • 0025197488 scopus 로고
    • Infection of phytoplankton by viruses and reduction of primary productivity
    • Suttle, C. A., Chan, A. M., and Cottrell, M. T. (1990). Infection of phytoplankton by viruses and reduction of primary productivity. Nature 347, 467-469.
    • (1990) Nature , vol.347 , pp. 467-469
    • Suttle, C.A.1    Chan, A.M.2    Cottrell, M.T.3
  • 42
    • 0024190397 scopus 로고
    • The location, sequence, transcription, and regulation of a baculovirus DNA polymerase gene
    • Tomalski, M. D., Wu, J., and Miller, L. K. (1988). The location, sequence, transcription, and regulation of a baculovirus DNA polymerase gene. Virology 167, 591-600.
    • (1988) Virology , vol.167 , pp. 591-600
    • Tomalski, M.D.1    Wu, J.2    Miller, L.K.3
  • 43
    • 0023276935 scopus 로고
    • Nucleotide sequence of the DNA polymerase gene of herpes simplex virus type-2 and comparison with the type-1 counterpart
    • Tsurumi, T., Maeno, K., and Nishiyama, Y. (1987). Nucleotide sequence of the DNA polymerase gene of herpes simplex virus type-2 and comparison with the type-1 counterpart. Gene 52, 129-137.
    • (1987) Gene , vol.52 , pp. 129-137
    • Tsurumi, T.1    Maeno, K.2    Nishiyama, Y.3
  • 45
    • 0001781827 scopus 로고
    • Phycodnaviridae
    • "Classification and Nomenclature of Viruses" (R I. B. Francki, C. M. Fauguet, D. L. Knudson, and F. Brown, Ed.), Springer-Verlag, Vienna
    • Van Etten, J. L., and Ghabrial, S. A. (1991). Phycodnaviridae. In "Classification and Nomenclature of Viruses" (R I. B. Francki, C. M. Fauguet, D. L. Knudson, and F. Brown, Ed.), Arch. Virol., Suppl. 2, pp. 137-139. Springer-Verlag, Vienna.
    • (1991) Arch. Virol. , Issue.SUPPL. 2 , pp. 137-139
    • Van Etten, J.L.1    Ghabrial, S.A.2
  • 46
    • 0025833760 scopus 로고
    • Viruses and virus-like particles of eukaryotic algae
    • Van Etten, J. L., Lane, L. C., and Meints, R. H. (1991). Viruses and virus-like particles of eukaryotic algae. Microbiol. Rev. 55, 586-620.
    • (1991) Microbiol. Rev. , vol.55 , pp. 586-620
    • Van Etten, J.L.1    Lane, L.C.2    Meints, R.H.3
  • 48
    • 0024562306 scopus 로고
    • Human DNA polymerase δ: Predicted functional domains and relationships with viral DNA polymerase
    • Wang, T. S.-F., Wong, S. W., and Korn, D. (1989). Human DNA polymerase δ: Predicted functional domains and relationships with viral DNA polymerase. FASEB J. 3, 14-21.
    • (1989) FASEB J. , vol.3 , pp. 14-21
    • Wang, T.S.-F.1    Wong, S.W.2    Korn, D.3
  • 50
    • 0028175750 scopus 로고
    • A modified alkaline lysis miniprep protocol using a single microcentrifuge tube
    • Xiang, C., Wang, H., Shiel, P., Berger, P., and Guerra, D. J. (1994). A modified alkaline lysis miniprep protocol using a single microcentrifuge tube. BioTechniques 17, 30-32.
    • (1994) BioTechniques , vol.17 , pp. 30-32
    • Xiang, C.1    Wang, H.2    Shiel, P.3    Berger, P.4    Guerra, D.J.5


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