Discordant temporal and geographic patterns in maternal lineages of eastern north American frogs, Rana catesbeiana (Ranidae) and Pseudacris crucifer (Hylidae)

Molecular Phylogenetics and Evolution

Volumn 32, Issue 3, 2004, Pages 799-816

  Austin, James D ^a   Lougheed, Stephen C ^a   Boag, Peter T ^a  

^a QUEEN S UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CANADA; COMPARATIVE STUDY; DEMOGRAPHY; DNA BASE COMPOSITION; DNA SEQUENCE; FROGS AND TOADS; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; STATISTICAL MODEL; UNITED STATES;

ANIMALS; ANURA; BASE COMPOSITION; BASE SEQUENCE; BAYES THEOREM; CANADA; DEMOGRAPHY; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GEOGRAPHY; LIKELIHOOD FUNCTIONS; MODELS, BIOLOGICAL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; UNITED STATES;

AMPHIBIA; ANURA; HYLIDAE; PSEUDACRIS; PSEUDACRIS CRUCIFER; RANA CATESBEIANA; RANIDAE; REPTILIA;

EID: 3843100542     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.03.006     Document Type: Article

References (81)

1. Arbogast B.S, Slowinski J.B. Pleistocene speciation and the mitochondrial DNA clock. Science. 282:1998;1955a
2. Austin J.D, Lougheed S.C, Neidrauer L, Chek A.A, Boag P.T. Cryptic lineages in a small frog: the post-glacial history of the spring peeper, Pseudacris crucifer (Anura: Hylidae). Mol. Phylogenet. Evol. 25:2002;316-329
3. Austin J.D, Lougheed S.C, Moler P, Boag P.T. Phylogenetics, zoogeography, and the role of vicariance and dispersal in the evolution of the Rana catesbeiana (Anura: Ranidae) species group. Biol. J. Linn. Soc. 80:2003;601-624
4. Avise J.C. Molecular population structure and the biogeographic history of a regional fauna: a case history with lessons for conservation biology. Oikos. 63:1992;62-76
5. Avise J.C. Phylogeography: The History and Formation of Species. 2000;Harvard University Press, Cambridge
6. Avise J.C, Walker D. Pleistocene phylogeographic effects on avian populations and the speciation process. Proc. R. Soc. Lond. B. 265:1998;457-463
7. Avise J.C, Walker D, Johns G.C. Speciation durations and Pleistocene effects on vertebrate phylogeography. Proc. R. Soc. Lond. B. 265:1998;1707-1712
8. Bider, J.R., Matte, S., 1996. The atlas of amphibians and reptiles of Québec. St. Lawrence Valley. Natural History Society, Sainte-Anne-de-Bellevue, Québec and Ministre de l'Environnement et de la Faune, Direction de la faune et des habitats, Québec
9. Blainey R.M. An annotated check list and biogeographic analysis of the insular herpetofauna of the Apalachicola region, Florida. Herpetologica. 27:1971;406-430
10. Blair, W.F., 1958. Distributional patterns of vertebrates in the southern United States in relation to past environments. In: Hubbs, C.L. (Ed.), Zoogeography. Am. Assoc. Advance. Sci. Publ. No. 51, pp. 433-468
11. Brant S, Orti G. Phylogeography of the Northern short-tailed shrew, Blarina brevicauda (Insectivora: Soricidae): past fragmentation and postglacial recolonization. Mol. Ecol. 12:2003;1435-1449
12. Brown J.H, Lomolino M.V. Biogeography. 1998;Sinauer, Sunderland
13. Burbrink F.T. Phylogeographic analysis of the cornsnake (Elaphe guttata) complex as inferred from maximum likelihood and Bayesian analyses. Mol. Phylogenet. Evol. 25:2002;465-476
14. Burbrink F.T, Lawson R, Slowinski J.B. Mitochondrial DNA phylogeography of the North American rat snake (Elaphe obsoleta): critique of the subspecies concept. Evolution. 54:2000;2107-2114
15. Church S.A, Kraus J.M, Mitchell J.C, Church D.R, Taylor D.R. Evidence for multiple Pleistocene refugia in the postglacial expansion of the eastern tiger salamander, Ambystoma tigrinum tigrinum. Evolution. 57:2003;372-383
16. Clark A.M, Moler P.E, Possardt E.E, Savitzky A.H, Brown W.S, Bowen B.W. Phylogeography of the timber rattlesnake (Crotalus horridus) based on mtDNA sequences. J. Herpetol. 37:2003;145-154
17. Clement M, Posada D, Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9:2000;1657-1660
18. Conant R, Collins J.T. Reptiles and amphibians of eastern and central North America. third ed. :1998;Houghton Mifflin, New York
19. Davis S.L. Spring Peeper. Hunter M.L, Calhoun A.J.L, McCollough M. Maine Amphibians and Reptiles. 1999;85-89 University of Maine Press, Orono
20. Delcourt P.A, Delcourt H.R. Paleoecological insights on conservation of biodiversity: a focus on species, ecosystems, and landscapes. Ecol. Appl. 8:1998;921-934
21. Delzell, D.E., 1958. Spatial movement and growth of Hyla crucifer. University of Michigan Ph.D. Thesis, unpublished
22. Durand J.D, Templeton A.R, Guinand B, Imsiridou A, Bouvet Y. Nested clade and phylogeographic analyses of the chub, Leuciscus cephalus (Teleostei, Cyprinidae), in Greece: implications for Balkan Peninsula biogeography. Mol. Phylogenet. Evol. 13:1999;566-580
23. Ehrlich R.R, Wilson E.O. Biodiversity studies: science and policy. Science. 253:1991;758-761
24. Felsenstein J. Evolution trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution. 35:1981;1229-1242
25. Gasc, J.P., Cabela, A., Crnobrnja-Isilovic, J., Dolmen, D., Grossenbacher, K., Haffner, P., Lescure, J., Martens, H., Martínez Rica, J.P., Marin, H., Oliveira, M.E., Sofianidou, T.S., Vieth, M., Zuiderwijk, A. (Eds.), 1997. Atlas of amphibians and reptiles of Europe. Museum National d'Histoire Naturelle, Paris
26. Goebel A.M, Donnelly J.M, Atz M.E. PCR primers and amplification methods for 12S ribosomal DNA, the control region, cytochrome oxidase I, and cytochrome b in bufonids and other frogs, and an overview of PCR primers which have amplified DNA in amphibians successfully. Mol. Phylogenet. Evol. 11:1999;163-199
27. Grant W.S, Bowen B.W. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J. Heredity. 89:1998;415-426
28. Hedges S.B. Distribution pattern of amphibians in the West Indies. Duellman W.E. Patterns of Distribution of Amphibians. 1999;211-254 John Hopkins University Press, Baltimore
29. Hewitt G.M, Ibrahim K.M. Inferring glacial refugia and historical migrations with molecular phylogenies. Silvertown J, Antonovics J. Integrating Ecology and Evolution in a Spatial Context. 2001;271-294 Blackwell Science, Oxford
30. Highton R. Speciation in eastern North American salamanders of the genus Plethodon. Ann. Rev. Ecol. Syst. 26:1995;579-600
31. Hocutt C.H, Wiley N.O. The Zoogeography of North American Freshwater Fishes. 1986;Wiley, New York
32. Hoelzer, G.A., 2001. Self-organization of population structure in biological systems. Int. J. Genet., No. 345
33. Holman, J.A., 1995. Pleistocene amphibians and reptiles in North America. Oxford Mono. Geol. Geophys. No. 32. Oxford University Press, Oxford
34. Hubbard J.P. Avian evolution in the aridlands of North America. Living Bird. 12:1973;155-196
35. Huelsenbeck J.P, Crandall K.A. Phylogenetic estimation and hypothesis testing using maximum likelihood. Ann. Rev. Ecol. Syst. 28:1997;437-466
36. Huelsenbeck J.P, Ronquist F. MR.BAYES : Bayesian inference of phylogeny. Bioinformatics. 17:2001;754-755
37. Humphries C.J, Williams P.H, Vane-Wright R.I. Measuring biodiversity value for conservation. Ann. Rev. Ecol. Syst. 26:1995;93-111
38. Hurwood D.A, Hughes J.M. Nested clade analysis of the freshwater shrimp, Caridina zebra (Decapoda: Atyidae), from north-eastern Australia. Mol. Ecol. 10:2001;113-125
39. Ireland, D., 2003. Demographic connectivity and sex-biased dispersal in bullfrogs (Rana catesbeiana). Unpublished M.Sc. Thesis, Trent University, Peterborough, ON, 96 pp
40. Irwin D.E. Phylogeographic breaks without geographic barriers to gene flow. Evolution. 56:2002;2383-2394
41. Klicka J, Zink R.M. The importance of recent Ice Ages in speciation: a failed paradigm. Science. 277:1997;1666-1669
42. Klicka J, Zink R.M. Pleistocene effects on North American songbird evolution. Proc. R. Soc. Lond. B. 266:1999;695-700
43. Lanza B. On the introduction of Rana ridibunda (Pallus) and Rana catesbeiana (Shaw) in Italy. Copeia. 1962:1962;642-643
44. Maddison, W.P., Maddison, D.R., 2002. MacClade Analysis of Phylogeny and Character Evolution, version 4.0. Sinauer, Sunderland
45. Mahon R, Aiken K. The establishment of the North American bullfog, Rana catesbeiana (Amphibia, Anura, Ranidae) in Jamaica. J. Herpetol. 11:1977;197-199
46. Mayden R.L. Biogeography of the Ouachita highland fishes. Southwestern Nat. 30:1985;195-211
47. Mayden R.L. Vicariance biogeography, parsimony, and evolution in North American freshwater fishes. Syst. Zool. 37:1988;329-355
48. Mengel R.M. The North American Great Plains as isolating agent in bird speciation. Univ. Kans. Dept. Geol. Spec. Publ. 3:1970;279-340
49. Moriarty E.C, Cannatella D.C. Phylogenetic relationships of North American chorus frogs (Pseudacris). Mol. Phylogenet. Evol. 30:2004;409-420
50. Moritz C, Faith D.P. Comparative phylogeography and the identification of genetically divergent areas for conservation. Mol. Ecol. 7:1998;419-429
51. Moritz C, Schneider C.J, Wake D.B. Evolutionary relationships within the Ensatina eschscholtzii complex confirm the ring species interpretation. Syst. Biol. 41:1992;273-291
52. Near T.J, Page L.M, Mayden R.L. Intraspecific phylogeography of Percina evides (Percidae: Etheostomatinae): an additional test of the Central Highlands pre-Pleistocene vicariance hypothesis. Mol. Ecol. 10:2001;2235-2240
53. Nei M. Molecular Evolutionary Genetics. 1987;Columbia University Press, New York
54. Nei M, Li W.H. Mathamatical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA. 76:1979;5269-5273
55. Nichols R. Gene trees and species trees are not the same. Trends Ecol. Evol. 16:2001;358-364
56. Nylander, J.A.A., 2002. Mr. Modeltest vers. 1.1, http://morphbank.ebc.uu. se/mrbayes/
57. Perez M.E. The food of Rana catesbiana (Shaw) in Puerto Rico. Herpetologica. 7:1951;102-104
58. Petit R.J, Aguinagalde I, de Beaulieu J, Bittkau C, Brewer S, Cheddadi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Müller-Starck G, Demesure-Musch B, Palmé A, Martín J.P, Rendell S, Vendramin G.G. Glacial refugia: hotspots but not melting pots of genetic diversity. Science. 300:2003;1563-1565
59. Pfliefer W.L. A distributional study of Missouri fishes. Univ. Kansas Mus. Nat. Hist. Publ. Ser. 20:1971;226-570
60. Posada D, Crandall K.A, Templeton A.R. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9:2000;487-488
61. Schneider, S., Roessli, D., Excoffier, L., 2000. Arlequin Ver. 2.2: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland
62. Sullivan J, Arellano E, Rogers D.S. Comparative phylogeography of Mesoamerican highland rodents: concerted versus independent response to past climatic fluctuations. Am. Nat. 155:2000;755-768
63. Swift C.C, Gilbert C.R, Bortone S.A, Burgess G.H, Yeger R.W. Zoogeography of the fresh water fishes of the southeastern United States: Savannah River to Lake Ponchartrain. Holcutt C.H, Wiley E.O. Zoogeography of North American Freshwater Fishes. 1985;213-265 Wiley, New York
64. Swofford, D.L., 1998. PAUP*: Phylogenetic Analysis using Parsimony (* and other methods). Version 4.0 Beta. Sinauer, Sunderland, Massachusetts
65. Telford S.R Jr. The American bullfrog, Rana catesbaiana, in Japan. Copeia. 1960:1960;155
66. Templeton A.R. Nested clade analysis of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7:1998;381-397
67. Templeton A.R. Statistical phylogeography: methods for evaluating and minimizing inference error. Mol. Ecol. 13:2004;789-809
68. Templeton A.R, Sing C.F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics. 134:1993;659-669
69. Templeton A.R, Boerwinkle E, Sing C.F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. I. Basis theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics. 117:1987;343-351
70. Templeton A.R, Crandall K.A, Sing C.F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonucleases mapping and DNA sequence data. III. Cladogram estimation. Genetics. 132:1992;597-601
71. Templeton A.R, Routman E, Phillips C.A. Separating population structure from population history: a cladistic analysis of the geographic distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics. 140:1995;767-782
72. Thornbury W.D. Regional Geomorphology of the United States. 1965;Wiley, New York
73. Valentine J.W, Jablonski D. Fossil communities: compositional variation at many time scales. Ricklefs R.E, Schluter D. Species Diversity in Ecological Communities. 1993;341-349 University of Chicago Press, Chicago
74. Veith M, Kosuch J, Vences M. Climatic oscillations triggered post-Messian speciation of western Palearctic brown frogs (Amphibia, Ranidae). Mol. Phylogenet. Evol. 26:2003;310-327
75. Walker D, Moler P.E, Buhlman K.A, Avise J.C. Phylogenetic patterns in Kinosternon subrubrum and K. baurii based on mitochondrial DNA restriction analysis. Herpetologica. 54:1998;174-184
76. Weisrock D.W, Macey J.R, Ugurtas I.H, Larson A, Papenfuss T.J. Molecular phylogenetics and historical biogeography among salamandrids of the 'true' salamander clade: rapid branching of numerous highly divergent lineages in Mertensiella luschani associated with the rise of Anatolia. Mol. Phylogenet. Evol. 18:2001;434-448
77. Wiley E.O, Mayden R.L. Species and speciation in phylogenetic systematics, with examples from the North American fish fauna. Ann. Missouri Bot. Gard. 72:1985;596-635
78. Willis Y.L, Moyle D.L, Baskett T.S. Emergence, breeding, hibernation, movements, and transformations of the bullfrog, Rana catesbeiana in Missouri. Copeia. 1956:1956;30-41
79. Zamudio K.R, Savage W.K. Historical isolation, range expansion, and secondary contact of two highly divergent mitochondrial lineages in spotted salamanders (Ambystoma maculatum). Evolution. 57:2003;1631-1652
80. Zhang D.X, Hewitt G.M. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol. Evol. 11:1996;247-251
81. Zink R.M, Slowinski J.B. Evidence from molecular systematics for decreased avian diversification in the Pleistocene epoch. Proc. Natl. Acad. Sci. USA. 92:1995;5832-5835