Phylogeographic breaks without geographic barriers to gene flow

Evolution

Volumn 56, Issue 12, 2002, Pages 2383-2394

  Irwin, Darren E ^a,b  

^a LUND UNIVERSITY   (Sweden)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Chloroplast DNA; Coalescent theory; Dispersal; Genealogy; Mitochondrial DNA; Phylloscopus trochiloides; Phylogeography

Indexed keywords

DISPERSAL; GENE FLOW; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY;

ANIMALIA; PASSERI; PHYLLOSCOPUS TROCHILOIDES;

EID: 0036959114     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2002.tb00164.x     Document Type: Article

References (52)

1. Avise, J. C. 1994. Molecular markers, natural history and evolution. Chapman and Hall, New York.
2. _. 2000. Phylogeography: the history and formation of species. Harvard Univ. Press, Cambridge, MA.
3. Avise, J. C., J. Arnold, R. M. Ball Jr., E. Bermingham, T. Lamb, J. E. Neigel, C. A. Reeb, and N. C. Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18:489-522.
4. Barrowclough, G. F. 1980. Gene flow, population sizes, and genetic variance components in birds. Evolution 34:789-798.
5. Barton, N. H., and I. Wilson. 1995. Genealogies and geography. Philos. Trans. R. Soc. Lond. B 349:49-59.
6. Bond, J. E., M. C. Hedin, M. G. Ramirez, and B. D. Opell. 2001. Deep molecular divergence in the absence of morphological and ecological change in the Californian coastal dune endemic trapdoor spider Aptostichus simus. Mol. Ecol. 10:899-910.
7. Bossart, J. L., and D. P. Prowell. 1998. Genetic estimates of population structure and gene flow: limitations, lessons and new directions. Trends Ecol. Evol. 13:202-206.
8. Burton, R. S. 1998. Intraspecific phylogeography across the Point Conception biogeographic boundary. Evolution 52:734-745.
9. Felsenstein, J. 1975. A pain in the torus: some difficulties with models of isolation by distance. Am. Nat. 109:359-368.
10. Gibbs, H. L., R. J. G. Dawson, and K. A. Hobson. 2000. Limited differentiation in microsatellite DNA variation among northern populations of the yellow warbler: evidence for male-biased gene flow? Mol. Ecol. 9:2137-2147.
11. Hansson, B., S. Bensch, D. Hasselquist, and B. Nielsen. 2002. Restricted dispersal in a long-distance migrant bird with patchy distribution, the great reed warbler. Oecologia 130:536-542.
12. Harding, R. M. 1996. New phylogenies: an introductory look at the coalescent. Pp. 15-22 in P. H. Harvey, A. J. Leigh Brown, J. Maynard Smith, and S. Nee, eds. New uses for new phylogenies. Oxford Univ. Press, Oxford, U.K.
13. Hare, M. P. 2001. Prospects for nuclear gene phylogeography. Trends Ecol. Evol. 16:700-706.
14. Hudson, R. R. 1998. Island models and the coalescent process. Mol. Ecol. 7:413-418.
15. Irwin, D. E. 2000. Song variation in an avian ring species. Evolution 54:998-1010.
16. Irwin, D. E., S. Bensch, and T. D. Price. 2001a. Speciation in a ring. Nature 409:333-337.
17. Irwin, D. E., J. H. Irwin, and T. D. Price. 2001b. Ring species as bridges between microevolution and speciation. Genetica 112/113:223-243.
18. James, C. H., and C. Moritz. 2000. Intraspecific phylogeography in the sedge frog Litoria fallax (Hylidae) indicates pre-Pleistocene vicariance of an open forest species from eastern Australia. Mol. Ecol. 9:349-358.
19. Kingman, J. F. C. 1982. The coalescent. Stochastic Process. Appl. 13:235-248.
20. Marjoram, P., and P. Donnelly. 1994. Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution. Genetics 136:673-683.
21. Milot, E., H. L. Gibbs, and K. A. Hobson. 2000. Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechìa). Mol. Ecol. 9:667-681.
22. Mindell, D. P., ed. 1997. Avian molecular evolution and systematics. Academic Press, San Diego, CA.
23. Moore, W. S. 1995. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49:718-726.
24. Moore, W. S., and R. A. Dolbeer. 1989. The use of banding recovery data to estimate dispersal rates and gene flow in avian species: case studies in the red-winged blackbird and common grackle. Condor 91:242-253.
25. Nei, M. 1987. Molecular evolutionary genetics. Columbia Univ. Press, New York.
26. Nei, M., and N. Takahata. 1993. Effective population size, genetic diversity, and coalescence time in subdivided populations. J. Mol. Evol. 37:240-244.
27. Neigel, J. E., and J. C. Avise. 1986. Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation. Pp. 515-534 in E. Nevo and S. Karlin, eds. Evolutionary processes and theory. Academic Press, New York.
28. _. 1993. Application of a random walk model to geographic distributions of animal mitochondrial DNA variation. Genetics 135:1209-1220.
29. Neigel, J. E., R. M. Ball Jr.,and J. C. Avise. 1991. Estimation of single generation migration distances from geographic variation in animal mitochondrial DNA. Evolution 45:423-432.
30. Page, R. D. M., and E. C. Holmes, eds. 1998. Molecular evolution. Blackwell Science, Oxford, U.K.
31. Patton, J. L., and M. N. F. da Silva. 1998. Rivers, refuges, and ridges: the geography of speciation of Amazonian mammals. Pp. 202-213 in D. J. Howard and S. H. Berlocher, eds. Endless forms: species and speciation. Oxford Univ. Press, Oxford, U.K.
32. Petit, R. J., U. M. Csaikl, S. Bordács, and 26 other authors. 2002. Chloroplast DNA variation in European white oaks: phylogeography and patterns of diversity based on data from over 2600 populations. For. Ecol. Manage. 156:5-26.
33. Price, T. 1991. Morphology and ecology of breeding warblers along an altitudinal gradient in Kashmir, India. J. Anim. Ecol. 60:643-664.
34. Puorto, G., M. da Graça Salomão, R. D. G. Theakston, R. S. Thorpe, D. A. Warrell, and W. Wüster. 2001. Combining mitochondrial DNA sequences and morphological data to infer species boundaries: phylogeography of lanceheaded pitvipers in the Brazilian Atlantic forest, and the status of Bothrops pradoi (Squamata: Serpentes: Viperidae). J. Evol. Biol. 14:527-538.
35. Reeb, C. A., and J. C. Avise. 1990. A genetic discontinuity in a continuously distributed species: mitochondrial DNA in the American oyster, Crassostrea virginica. Genetics 124:397-406.
36. Riddle, B. R., D. J. Hafner, L. F. Alexander, and J. R. Jaeger. 2000. Cryptic vicariance in the historical assembly of a Baja California Peninsular Desert biota. Proc. Natl. Acad. Sci. USA 97:14438-14443.
37. Slatkin, M. 1991. Inbreeding coefficients and coalescence times. Genet. Res. 58:167-175.
38. _. 1993. Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47:264-279.
39. Slatkin, M., and W. P. Maddison. 1989. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123:603-613.
40. _. 1990. Detecting isolation by distance using phylogenies of genes. Genetics 126:249-260.
41. Sokal, R. R., and F. J. Rohlf. 1995. Biometry: the principles and practice of statistics in biological research. W. H. Freeman, New York.
42. Soltis, D. E., M. A. Gitzendanner, D. D. Strenge, and P. S. Soltis. 1997. Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant Syst. Evol. 206:353-373.
43. Takahata, N., and M. Slatkin. 1990. Genealogy of neutral genes in two partially isolated populations. Theor. Popul. Biol. 38:331-350.
44. Templeton, A. R., E. Routman, and C. A. Phillips. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140:767-782.
45. Ticehurst, C. B. 1938. A systematic review of the genus Phylloscopus. Trustees of the British Museum, London.
46. Upton, D. E., and R. W. Murphy. 1997. Phylogeny of the side-blotched lizards (Phrynosomatidae: Uta) based on mtDNA sequences: support for a midpeninsular seaway in Baja California. Mol. Phylogenet. Evol. 8:104-113.
47. Wake, D. B. 2001. Speciation in the round. Nature 409:299-300.
48. Wakeley, J. 2001. The coalescent in an island model of population subdivision with variation among demes. Theor. Popul. Biol. 59:133-144.
49. Wakeley, J., and N. Aliacar. 2001. Gene genealogies in a meta-population. Genetics 159:893-905.
50. Wakeley, J., and J. Hey. 1997. Estimating ancestral population parameters. Genetics 145:847-855.
51. Wiens, J. J., and T. A. Penkrot. 2002. Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporous). Syst. Biol. 51:69-91.
52. Wright, S. 1943. Isolation by distance. Genetics 28:114-138.