Nested Clade and Phylogeographic Analyses of the Chub, Leuciscus cephalus (Teleostei, Cyprinidae), in Greece: Implications for Balkan Peninsula Biogeography

Molecular Phylogenetics and Evolution

Volumn 13, Issue 3, 1999, Pages 566-580

  Durand, Jean Dominique ^a   Templeton, Alan R ^b   Guinand, Bruno ^a   Imsiridou, Anastasia ^c   Bouvet, Yvette ^a  

^a UNIVERSITÉ LYON 1   (France)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

Phylogeography; nested clade analysis; mitochondrial DNA; river capture; sea level changes; genetic introgression; Leuciscus cephalus.

Indexed keywords

CYTOCHROME B; FRESH WATER; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; CYPRINIFORMES; EASTERN EUROPE; GENETIC VARIABILITY; GENETICS; GREECE; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; POPULATION GENETICS;

ANIMALS; CYPRINIDAE; CYTOCHROME B GROUP; DNA, MITOCHONDRIAL; EUROPE, EASTERN; FRESH WATER; GENETICS, POPULATION; GREECE; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; VARIATION (GENETICS);

EID: 0033257283     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0671     Document Type: Article

References (78)

1. Ahnelt H., Bianco P. G., Schwammer H. Systematics and zoogeography of Knipowitschia caucasica (Teleostei: Gobiidae) based on new records from the Aegean Anatolian area. Ichthyol. Explor. Freshwaters. 6:1995;49-60.
2. Aksu A. E., Yasar D., Mudie P. J., Gillespie H. Late glacial-Holocene paleoclimatic and paleooceanographic evolution of the Aegean Sea: Micropaleontological and stable isotopic evidence. Mar. Micropaleontol. 25:1995;1-28.
3. Apostodilis A. P., Triantaphyllidis C., Kouvatsi A., Economidis P. S. Mitochondrial DNA sequence variation and phylogeography among Salmo trutta L. (Greek brown trout) populations. Mol. Ecol. 6:1997;531-542.
4. Avise J. C. Molecular Markers, Natural History and Evolution. 1994;Chapman & Hall, New York.
5. Avise J. C. The history and purview of phylogeography: A personal reflection. Mol. Ecol. 7:1998;371-379.
6. Avise J. C., Arnold J., Ball R. M., Bermingham E., Lamb T., Neigel J. E., Reeb C. A., Saunders N. C. Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18:1987;489-522.
7. Banarescu P. M. Principaux traits de la zoogéographie des eaux douces. C. R. Soc. Biogéogr. 67:1992;133-154.
8. Barton N. H., Wilson I. Genealogies and geography. Proc. R. Soc. Lond. B. 349:1995;49-59.
9. Berg L. S. Freshwater Fishes of the USSR and Adjacent Countries. 1949;Academy of Sciences of the USSR.
10. Bermingham E., Avise J. C. Molecular zoogeography of freshwater fishes in the southeastern United States. Genetics. 113:1986;939-965.
11. Bermingham E., Martin A. P. Comparative mtDNA phylogeography of neotropical freshwater fishes: Testing shared history to infer the evolutionary landscape of lower Central America. Mol. Ecol. 7:1998;499-517.
12. Bianco P. G. Potential role of the paleohistory of the Mediterranean and Paratethys basins on the early dispersal of Auro-Mediterranean freshwater fishes. Ichthyol. Explor. Freshwaters. 1:1990;167-184.
13. Bishop P. Drainage rearrangement by river capture, beheading and diversion. Prog. Phys. Geol. 19:1995;449-473.
14. Briolay J., Galtier N., Brito R. M., Bouvet Y. Molecular phylogeny of Cyprinidae inferred from cytochrome b DNA sequences. Mol. Phylogenet. Evol. 9:1998;100-108.
15. Brito R. M., Briolay J., Galtier N., Bouvet Y., Coelho M. M. Phylogenetic relationships within genus Leuciscus (Pisces, Cyprinidae) in Portuguese freshwater, based on mitochondrial DNA cytochrome b sequences. Mol. Phylogenet. Evol. 8:1997;435-442.
16. Cantatore P., Roberti M., Pesole G., Ludovico A., Milella F., Gadaleta M. N., Saccone C. Evolutionary analysis of cytochrome b sequences in some perciformes: Evidence for a slower rate of evolution than in mammals. J. Mol. Evol. 39:1994;589-597.
17. Castelloe J., Templeton A. R. Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol. Phylogenet. Evol. 3:1994;102-113.
18. Cavalli-Sforza L. L. The DNA revolution in population genetics. Trends Genet. 14:1998;60-65.
19. Chronis G., Piper D. J. W., Anagnostou C. Late Quaternary evolution of the Gulf of Patras, Greece: Tectonism, deltaic sedimentation and sea-level change. Mar. Geol. 97:1991;191-209.
20. Cramp A., Collins M., West R. Late Pleistocene-Holocene sedimentation in the NW Aegean sea: A palaeoclimatic palaeooceanographic reconstruction. Palaeogeogr. Palaeoclimat. Palaeoecol. 68:1988;61-77.
21. Crivelli A. J., Maitland P. S. Introduction. Biological Conservation special issue: Endemic freshwater fishes of the Northern Mediterranean region. Biol. Cons. 72:1995;121.
22. DeBry R. W. The consistency of several phylogeny-inference methods under varying evolutionary rates. Mol. Biol. Evol. 9:1992;537-551.
23. Doadrio I., Carmona J. A. Genetic divergence in Greek populations of the genus Leuciscus and its evolutionary and biogeographical implications. J. Fish Biol. 53:1998;591-613.
24. Dowling T. E., Hoeh W. R. The extent of introgression outside the contact zone between Notropis cornutus and N. chrysocephalus (Teleostei: Cyprinidae). Evolution. 45:1991;944-956.
25. Durand J. D., Guinand B., Bouvet Y. Local and global multivariate analysis of geographical mitochondrial DNA variation of Leuciscus cephalus L. 1758 (Pisces: Cyprinidae) in the Balkan Peninsula. Biol. J. Linn. Soc. 67:1999;19-42.
26. Duvernell D. D., Aspinwall N. Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei: Cyprinidae) in Missouri and Arkansas. Mol. Ecol. 4:1995;173-181.
27. Echelle A. A., Dowling T. E. Mitochondrial DNA variation and evolution of the Death Valley pupfishes (Cyprinodon, Cyprinodontidae). Evolution. 46:1992;193-206.
28. Economidis P. S. Check List of Freshwater Fishes of Greece. 1991;Hellenic Society for the Protection of Nature, Athens.
29. Economidis P. S., Banarescu P. M. The distribution and origins of freshwater fishes in the Balkan peninsul, especially in Greece. Int. Rev. Ges. Hydrobiol. 76:1991;257-283.
30. Economidis P. S., Nalbant T. T. A study of the loaches of the genera Cobitis and Sabanejewia (Pisces, Cobitidae) of Greece, with description of six new taxa. Trav. Mus. Natl. Hist. Nat. "Grigore Antipa" 36:1996;295-347.
31. Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:1978;401-410.
32. Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:1981;368-376.
33. Felsenstein J. How can we infer geography and history from gene frequency. J. Theor. Biol. 96:1982;9-20.
34. Felsenstein, J. 1993, PHYLIP, phylogeny inference package, version 3.4, Univ. of Washington, Seattle, WA.
35. Galtier N., Gouy M., Gautier C. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12:1996;543-548.
36. Goldman N. Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analyses. Syst. Zool. 39:1990;345-361.
37. Guinand B., Easteal S. Multivariate patterns of genetic differentiation support complex colonization schemes in Bufo marinus populations. Evolution. 50:1996;944-951.
38. Hammer M. F., Karafet T., Rasanayagam A., Wood E. T., Altheide T. K., Jenkins T., Griffiths R. C., Templeton A. R., Zegura S. L. Out of Africa and back again: Nested clade analysis of human Y chromosome variation. Mol. Biol. Evol. 15:1998;427-441.
39. Hey J. Population genetics and human origins - Haplotypes are key. Trends Genet. 14:1998;303-304.
40. Hillis D. M., Moritz C. An overview of applications of molecular systematics. Hillis D. M., Moritz C. Molecular Systematics. 1990;502-515 Sinauer, Sunderland.
41. Hudson R. R. Island models and the coalescent process. Mol. Ecol. 7:1998;413-418.
42. Imsiridou A., Karakousis Y., Triantaphyllidis C. Genetic polymorphism and differentiation among chub Leuciscus cephalus L. (Pisces, Cyprinidae) populations of Greece. Biochem. System. Ecol. 25:1997;537-546.
43. Imsiridou A., Apostodilis A. P., Durand J. D., Briolay J., Bouvet Y., Triantaphyllidis C. Genetic differentiation and phylogenetic relationships among Greek chub Leuciscus cephalus L. (Pisces, Cyprinidae) populations as revealed by RFLP analysis of amplified mitochondrial DNA segments. Biochem. System. Ecol. 26:1998;415-429.
44. Karakousis Y., Machordom A., Doadrio I., Economidis P. S. Phylogenetic relationships of Barbus peloponnesius Valenciennes, 1842 (Osteichthyes: Cyprinidae) from Greece with other species of Barbus as revealed by allozyme electrophoresis. Biochem. System. Ecol. 23:1995;365-375.
45. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
46. Kingman J. F. C. The coalescent. Stochast. Proc. Appl. 13:1982;245-248.
47. Kocher T. D., Thomas W. K., Meyer A., Edwards S. V., Paabo S., Villablanca F. X., Wilson A. C. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA. 86:1989;6196-6200.
48. Lafonatine P., Dodson J. J. Intraspecific genetic structure of white sucker (Catostomus commersoni) in northeastern North America as revealed by mitochondrial DNA polymorphism. Can. J. Fish. Aquat. Sci. 54:1997;555-565.
49. Maddison D. R., Ruvolo R. M., Swofford D. L. Geographic origins of human mitochondrial DNA: Phylogenetic evidence from control region sequences. Syst. Biol. 41:1992;111-124.
50. Menozzi P., Piazza A., Cavalli-Sforza L. L. Synthetic maps of human gene frequencies in Europeans. Science. 201:1978;786-792.
51. Mooers A. Ø., Heard S. B. Inferring evolutionary process from phylogenetic tree shape. Q. Rev. Biol. 72:1997;31-54.
52. Murdoch M. H., Hebert P. D. N. Mitochondrial DNA evidence of distinct glacial refugia for brown bullhead (Ameiurus nebulosus) in the Great Lakes. Can. J. Fish. Aquat. Sci. 54:1997;1450-1460.
53. Ortí G., Bell M. A., Reimchen T. E., Meyer A. Global survey of mitochondrial DNA sequences in the threespine stickleback: Evidence for migrations. Evolution. 48:1994;608-622.
54. Page R. D. M. Temporal congruence revisited: Comparison of mitochondrial DNA sequence divergence in cospeciating pocket gophers and their chewing lice. Syst. Biol. 45:1996;151-167.
55. Psilovikos A. Rivers, drainage and dynamic development of the Balkan region during the neotectonic stage. Ann. Géol. Pays Helléniques. 1987-1988:1987;185-202.
56. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
57. Shackelton N. J. Oxygen isotopes, ice volume and sea level. Quater. Sci. Rev. 6:1987;183-190.
58. Slatkin M., Maddison W. P. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics. 123:1989;603-613.
59. Smouse P. E. To tree or not to tree. Mol. Ecol. 7:1998;399-412.
60. Strange R. M., Burr B. M. Intraspecific phylogeography of north American highland fishes: A test of the Pleistocene vicariance hypothesis. Evolution. 51:1997;885-897.
61. Swofford, D. L. 1990, PAUP: phylogenetic analysis using parsimony, version 3.0, Illinois Natural History Survey, Champaign, IL.
62. Tajima F., Nei M. Estimation of evolutionary distances between nucleotide sequences. Mol. Biol. Evol. 1:1984;269-285.
63. Takahata N., Slatkin M. Genealogy of neutral genes in two partially isolated populations. Theor. Pop. Biol. 38:1990;331-350.
64. Takezaki N., Rzhetsky A., Nei M. Phylogenetic test of molecular clock and linearized trees. Mol. Biol. Evol. 12:1995;823-833.
65. Taylor E. B., Bentzen P. Evidence for multiple origins and sympatric divergence of trophic ecotypes of smelt (Osmerus) in northeastern North America. Evolution. 47:1993;813-832.
66. Templeton A. R. The Eve hypothesis: A genetic critique and reanalysis. Am. Anthropol. 95:1993;51-72.
67. Templeton, A. R.1997. Testing the out-of-Africa replacement hypothesis with mitochondrial DNA data. InConceptual Issues in Modern Human Origins ResearchG. A. Clark and C. Willermet, Eds., pp. 329-360. Aldine de Gruyter, Amsterdam.
68. Templeton A. R. Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history. Mol. Ecol. 7:1998;381-397.
69. Templeton A. R., Boerwinkle E., Sing C. F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics. 117:1987;343-351.
70. Templeton A. R., Sing C. F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analysis with cladogram uncertainty and recombination. Genetics. 134:1993;659-669.
71. Templeton A. R., Routman E., Philips C. A. Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics. 140:1995;767-782.
72. Templeton A. R., Georgiadis N. J. A landscape approach to conservation genetics: Conserving evolutionary processes in the African Bovidae. Avise J. C., Hamerick J. L. Conservation Genetics: Case Histories from Nature. 1996;398-430 Chapman & Hall, New York.
73. Thorpe R. S., McGregor D. P., Cumming A. M., Jordan W. C. DNA evolution and colonization sequence of island lizards in relation to geological history: mtDNA RFLP, cytochrome b, cytochrome oxydase, 12S RNA sequence, and nuclear RAPD analysis. Evolution. 48:1994;230-240.
74. Thunell R. C., Williams D. F. Paleotemperature and paleosalinity history of the eastern Mediterranean during the late Quaternary. Palaeogeogr. Palaeoclimat. Palaeoecol. 44:1983;23-39.
75. Van Andel T. H., Shackleton J. C. Late Paleolithic and Mesolithic coastlines of Greece and the Aegean. J. Field Archeol. 9:1982;445-454.
76. Wakeley J. Distinguishing migration from isolation using the variance of pairwise differences. Theor. Pop. Biol. 49:1996;369-386.
77. Waters J. M., Lintermans M., White R. W. G. Mitochondrial DNA variation suggests river capture as source of vicariance in Gadopsis bispinosus (Pisces, Gadopsidae). J. Fish Biol. 44:1994;549-551.
78. Wilson C. C., Hebert P. D. N. Phylogeography and post-glacial dispersal of lake trout (Salvelinus namaycush) in North America. Can. J. Fish. Aquat. Sci. 55:1998;1010-1024.