-
1
-
-
0021067619
-
Caco-2 cell monolayer a surrogate marker for in vivo intestinal permeability in humans
-
Pinto M, Robine-Leon S, Appay M, Kedinger M, Triadou N, Dussaulx E, Lacroix B, Simon-Assmann P, Haffen K, Fogh J, Zweibaum A. 1983. Caco-2 cell monolayer a surrogate marker for in vivo intestinal permeability in humans. Biol Cell 47:323-328.
-
(1983)
Biol Cell
, vol.47
, pp. 323-328
-
-
Pinto, M.1
Robine-Leon, S.2
Appay, M.3
Kedinger, M.4
Triadou, N.5
Dussaulx, E.6
Lacroix, B.7
Simon-Assmann, P.8
Haffen, K.9
Fogh, J.10
Zweibaum, A.11
-
2
-
-
0026321138
-
Cell cultures as models for drug absorption across the intestinal mucosa
-
Artursson P. 1991. Cell cultures as models for drug absorption across the intestinal mucosa. Control Rev Ther Drug Sys 8:305-330.
-
(1991)
Control Rev Ther Drug Sys
, vol.8
, pp. 305-330
-
-
Artursson, P.1
-
3
-
-
0035821601
-
Experimental and computational screening models for the prediction of intestinal drug absorption
-
Stenberg P, Norinder U, Luthman K, Artursson P, 2001. Experimental and computational screening models for the prediction of intestinal drug absorption. J Med Chem 44:1927-1937.
-
(2001)
J Med Chem
, vol.44
, pp. 1927-1937
-
-
Stenberg, P.1
Norinder, U.2
Luthman, K.3
Artursson, P.4
-
4
-
-
0032837628
-
Membrane-interaction QSAR analysis: Application to the estimation of eye irritation by organic compounds
-
Kulkarni AS, Hopfinger AJ. 1999. Membrane-interaction QSAR analysis: Application to the estimation of eye irritation by organic compounds. Pharm Res 16:1244-1252.
-
(1999)
Pharm Res
, vol.16
, pp. 1244-1252
-
-
Kulkarni, A.S.1
Hopfinger, A.J.2
-
5
-
-
0035124369
-
Prediction of eye irritation from organic chemicals using membrane-interaction QSAR analysis
-
Kulkarni AS, Hopfinger AJ, Osborne R, Bruner LH, Thompson ED. 2001. Prediction of eye irritation from organic chemicals using membrane-interaction QSAR analysis. Toxicol Sci 59:335-345.
-
(2001)
Toxicol Sci
, vol.59
, pp. 335-345
-
-
Kulkarni, A.S.1
Hopfinger, A.J.2
Osborne, R.3
Bruner, L.H.4
Thompson, E.D.5
-
6
-
-
85031443054
-
-
ADMET/MI-QSAR Version 1.0 User's Guide: The Chem21 Group, Inc.: Chicago, 2001.
-
ADMET/MI-QSAR Version 1.0 User's Guide: The Chem21 Group, Inc.: Chicago, 2001.
-
-
-
-
7
-
-
0036489453
-
Predicting Caco-2 cell permeation coefficients of organic molecules using membrane-interaction QSAR analysis
-
Kulkarni A, Han Y, Hopfinger AJ. 2002. Predicting Caco-2 cell permeation coefficients of organic molecules using membrane-interaction QSAR analysis. J Chem Inf Comput Sci 42:331-342.
-
(2002)
J Chem Inf Comput Sci
, vol.42
, pp. 331-342
-
-
Kulkarni, A.1
Han, Y.2
Hopfinger, A.J.3
-
8
-
-
0036844787
-
Predicting blood-brain barrier partitioning of organic molecules using membrane-interaction QSAR analysis
-
Iyer M, Mishra R, Han Y, Hopfinger AJ. 2002. Predicting blood-brain barrier partitioning of organic molecules using membrane-interaction QSAR analysis. Phar Res 19:1611-1621.
-
(2002)
Phar Res
, vol.19
, pp. 1611-1621
-
-
Iyer, M.1
Mishra, R.2
Han, Y.3
Hopfinger, A.J.4
-
9
-
-
25144460254
-
Characterization of skin penetration processes of organic molecules using molecular similarity and QSAR analysis
-
Santos-Filho OA, Hopfinger AJ, Zheng T. 2004. Characterization of skin penetration processes of organic molecules using molecular similarity and QSAR analysis. Mol Pharm 1:466-476.
-
(2004)
Mol Pharm
, vol.1
, pp. 466-476
-
-
Santos-Filho, O.A.1
Hopfinger, A.J.2
Zheng, T.3
-
10
-
-
33751392117
-
Clustering of chemical structures on the basis of two-dimensional similarity measures
-
Barnard JM, Downs GM. 1992. Clustering of chemical structures on the basis of two-dimensional similarity measures. J Chem Inf Comput Sci 32:644-649.
-
(1992)
J Chem Inf Comput Sci
, vol.32
, pp. 644-649
-
-
Barnard, J.M.1
Downs, G.M.2
-
11
-
-
33645265985
-
Clustering methods and their uses in computational chemistry
-
Lipkowitz KB, Boyd DB, editors, Hoboken: Wiley-VCH. pp
-
Downs GM, Barnard JM. 2002. Clustering methods and their uses in computational chemistry. In: Lipkowitz KB, Boyd DB, editors. Reviews in computational chemistry. Vol. 18. Hoboken: Wiley-VCH. pp 1-40.
-
(2002)
Reviews in computational chemistry
, vol.18
, pp. 1-40
-
-
Downs, G.M.1
Barnard, J.M.2
-
12
-
-
0000805679
-
The molecular connectivity chi indexes and kappa shape indexes in structure-property modeling
-
Lipkowitz KB, Boyd DB, editors, New York: VCH. pp
-
Hall LH, Kier LB. 1991. The molecular connectivity chi indexes and kappa shape indexes in structure-property modeling. In: Lipkowitz KB, Boyd DB, editors. Reviews in computational chemistry. Vol. 2. New York: VCH. pp 367-422.
-
(1991)
Reviews in computational chemistry
, vol.2
, pp. 367-422
-
-
Hall, L.H.1
Kier, L.B.2
-
13
-
-
85031443269
-
-
4D-MS Version 1.0 User's Guide: The Chem21 Group, Inc, Chicago, 2001
-
4D-MS Version 1.0 User's Guide: The Chem21 Group, Inc.: Chicago, 2001.
-
-
-
-
14
-
-
5544240592
-
4D-Fingerprints, universal QSAR and QSPR descriptors
-
Senese CL, Duca J, Pan D, Hopfinger AJ, Tseng YJ. 2004. 4D-Fingerprints, universal QSAR and QSPR descriptors. J Chem Inf Comput Sci 44: 1526-1539.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, pp. 1526-1539
-
-
Senese, C.L.1
Duca, J.2
Pan, D.3
Hopfinger, A.J.4
Tseng, Y.J.5
-
15
-
-
0031781430
-
Correlating partitioning and caco-2 cell permeability of structurally diverse small molecular weight compounds
-
Yazdanian M, Glynn SL, Wright JL, Hawi A. 1998. Correlating partitioning and caco-2 cell permeability of structurally diverse small molecular weight compounds. Pharm Res 15:1490-1494.
-
(1998)
Pharm Res
, vol.15
, pp. 1490-1494
-
-
Yazdanian, M.1
Glynn, S.L.2
Wright, J.L.3
Hawi, A.4
-
16
-
-
0019882643
-
Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine
-
Hauser H, Pascher I, Pearson RH, Sundell S. 1981. Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine. Biochim Biophys Acta 650:21-51.
-
(1981)
Biochim Biophys Acta
, vol.650
, pp. 21-51
-
-
Hauser, H.1
Pascher, I.2
Pearson, R.H.3
Sundell, S.4
-
17
-
-
85031441112
-
-
Hyperchem Release 4.5 for MS Windows. Hypercube Inc, Waterloo: Ontario, 1998
-
Hyperchem Release 4.5 for MS Windows. Hypercube Inc, Waterloo: Ontario, 1998.
-
-
-
-
18
-
-
85031449919
-
-
Mopac 6.0, Frank J. Seiler Research Laboratory, United States Air Force Academy: 1990.
-
Mopac 6.0, Frank J. Seiler Research Laboratory, United States Air Force Academy: 1990.
-
-
-
-
19
-
-
85031444898
-
-
Doherty DC. 2000. Molsim Version 3.0 User's Guide: The Chem21 Group, Inc.: Chicago.
-
Doherty DC. 2000. Molsim Version 3.0 User's Guide: The Chem21 Group, Inc.: Chicago.
-
-
-
-
20
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postman JPM, Gunsteren WFV, Nola AD, Haak JR. 1984. Molecular dynamics with coupling to an external bath. J Chem Phys 81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postman, J.P.M.2
Gunsteren, W.F.V.3
Nola, A.D.4
Haak, J.R.5
-
21
-
-
0028467707
-
Applications of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships
-
Rogers D, Hopfinger AJ. 1994. Applications of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships. J Chem Inf Comput Sci 34:854-866.
-
(1994)
J Chem Inf Comput Sci
, vol.34
, pp. 854-866
-
-
Rogers, D.1
Hopfinger, A.J.2
-
22
-
-
85031437404
-
WOLF 6.2 GFA Program
-
Group, Inc, Chicago
-
Rogers D. 1994. WOLF 6.2 GFA Program: The Chem21 Group, Inc.: Chicago.
-
(1994)
The Chem21
-
-
Rogers, D.1
-
24
-
-
0342645323
-
Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection
-
Brown RD, Martin YC. 1996. Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection. J Chem Inf Comput Sci 36:572-584.
-
(1996)
J Chem Inf Comput Sci
, vol.36
, pp. 572-584
-
-
Brown, R.D.1
Martin, Y.C.2
-
25
-
-
0035960060
-
Quantitative structure-antitumor activity relationships of camptothecin analogues: Cluster analysis and genetic algorithm-based studies
-
Fan Y, Shi LM, Kohn KW, Pommier Y, Weinstein JN. 2001. Quantitative structure-antitumor activity relationships of camptothecin analogues: Cluster analysis and genetic algorithm-based studies. J Med Chem 44:3254-3263.
-
(2001)
J Med Chem
, vol.44
, pp. 3254-3263
-
-
Fan, Y.1
Shi, L.M.2
Kohn, K.W.3
Pommier, Y.4
Weinstein, J.N.5
-
26
-
-
0344686399
-
A simple clustering technique to improve QSAR model selection and predictivity: Application to a receptor independent 4D-QSAR analysis of cyclic urea derived inhibitors of HIV-1 protease
-
Senese CL, Hopfinger AJ. 2003. A simple clustering technique to improve QSAR model selection and predictivity: Application to a receptor independent 4D-QSAR analysis of cyclic urea derived inhibitors of HIV-1 protease. J Chem Inf Comput Sci 43:2180-2193.
-
(2003)
J Chem Inf Comput Sci
, vol.43
, pp. 2180-2193
-
-
Senese, C.L.1
Hopfinger, A.J.2
-
27
-
-
10044267949
-
Constructing optimum blood brain barrier QSAR models using a combination of 4D-molecular similarity measures and cluster analysis
-
Pan D, Iyer M, Liu J, Li Y, Hopfinger AJ. 2004. Constructing optimum blood brain barrier QSAR models using a combination of 4D-molecular similarity measures and cluster analysis. J Chem Inf Comput Sci 44:2083-2098.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, pp. 2083-2098
-
-
Pan, D.1
Iyer, M.2
Liu, J.3
Li, Y.4
Hopfinger, A.J.5
-
28
-
-
0001680792
-
Diversity of chemical libraries
-
Schleyer PvR, Allinger NL, Clark T, Gasteiger J, Kollman P, Schaefer HF III, Schreiner PR, editors, West Sussex: John Wiley & Sons. pp
-
Agrafiotis DK. 1998. Diversity of chemical libraries. In: Schleyer PvR, Allinger NL, Clark T, Gasteiger J, Kollman P, Schaefer HF III, Schreiner PR, editors. Encyclopedia of computational chemistry. West Sussex: John Wiley & Sons. pp 742-761.
-
(1998)
Encyclopedia of computational chemistry
, pp. 742-761
-
-
Agrafiotis, D.K.1
-
29
-
-
0015680655
-
Clustering using a similarity measure based on shared nearest neighbors
-
Jarvis RA , Patrick EA . 1973, Clustering using a similarity measure based on shared nearest neighbors. IEEE Trans Comput C-22, 1025-1034.
-
(1973)
IEEE Trans Comput
, vol.C-22
, pp. 1025-1034
-
-
Jarvis, R.A.1
Patrick, E.A.2
-
30
-
-
0028496956
-
Similarity searching and clustering of chemical-structure databases using molecular property data
-
Downs GM, Willet P, Fisanick W. 1994. Similarity searching and clustering of chemical-structure databases using molecular property data. J Chem Inf Comput Sci 34:1094-1102.
-
(1994)
J Chem Inf Comput Sci
, vol.34
, pp. 1094-1102
-
-
Downs, G.M.1
Willet, P.2
Fisanick, W.3
-
31
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward JH. 1963. Hierarchical grouping to optimize an objective function. J Am Stat Assoc 58:236-244.
-
(1963)
J Am Stat Assoc
, vol.58
, pp. 236-244
-
-
Ward, J.H.1
-
32
-
-
0035470284
-
Estimation of molecular similarity based on 4D-QSAR analysis: Formalism and validation
-
Duca JS, Hopfinger AJ. 2001. Estimation of molecular similarity based on 4D-QSAR analysis: Formalism and validation. J Chem Inf Comput Sci 41:1367-1387.
-
(2001)
J Chem Inf Comput Sci
, vol.41
, pp. 1367-1387
-
-
Duca, J.S.1
Hopfinger, A.J.2
-
33
-
-
0032585545
-
Evaluation of dynamic polar molecular surface area as predictor of drug absorption: Comparison with other computational and experimental predictors
-
Palm K, Luthman K, Ungel A-L, Strandlund G, Beigi F, Lundahl P, Artursson P. 1998. Evaluation of dynamic polar molecular surface area as predictor of drug absorption: Comparison with other computational and experimental predictors. J Med Chem 41:5382-5392.
-
(1998)
J Med Chem
, vol.41
, pp. 5382-5392
-
-
Palm, K.1
Luthman, K.2
Ungel, A.-L.3
Strandlund, G.4
Beigi, F.5
Lundahl, P.6
Artursson, P.7
-
34
-
-
0032480901
-
Correlation of human jejunal permeability (in vivo) of drugs with experimentally and theoretically derived parameters: A multivariate data analysis approach
-
Winiwarter S, Bonham NM, Ax F, Hallberg A, Lennarnäs H, Karlén A. 1998. Correlation of human jejunal permeability (in vivo) of drugs with experimentally and theoretically derived parameters: A multivariate data analysis approach. J Med Chem 41:4939-4949.
-
(1998)
J Med Chem
, vol.41
, pp. 4939-4949
-
-
Winiwarter, S.1
Bonham, N.M.2
Ax, F.3
Hallberg, A.4
Lennarnäs, H.5
Karlén, A.6
-
35
-
-
0004315104
-
-
Mannhold R, Kubinyi H, Timmerman H, editors. Weinheim: Wiley-VCH
-
Todeschini R, Consonni V. 2000. Handbook of Molecular Descriptors: Methods and Principles in Medicinal Chemistry, Vol. 11. Mannhold R, Kubinyi H, Timmerman H, editors. Weinheim: Wiley-VCH.
-
(2000)
Handbook of Molecular Descriptors: Methods and Principles in Medicinal Chemistry
, vol.11
-
-
Todeschini, R.1
Consonni, V.2
|