-
1
-
-
0000619629
-
Generalized-ensemble approach for protein folding simulations
-
edited by D. Stauffer World Scientific, Singapore
-
U. H. E. Hansmann, Y. Okamoto: Generalized-ensemble approach for protein folding simulations. In Annual Reviews of Computational Physics VI edited by D. Stauffer (World Scientific, Singapore, 1999), pp. 129-157
-
(1999)
Annual Reviews of Computational Physics
, vol.6
, pp. 129-157
-
-
Hansmann, U.H.E.1
Okamoto, Y.2
-
2
-
-
0034864528
-
-
A. Mitsutake, Y. Sugita, Y. Okamoto: Biopolymers (Peptide Science) 60, 96-123 (2001) 369,
-
(2001)
Biopolymers (Peptide Science)
, vol.60
, Issue.96-123
, pp. 369
-
-
Mitsutake, A.1
Sugita, Y.2
Okamoto, Y.3
-
3
-
-
0037664492
-
Free-energy calculations in protein folding by generalized-ensemble algorithms
-
edited by T. Schlick, H. H. Gan Springer-Verlag, Berlin, cond-mat/0102296
-
Y. Sugita, Y. Okamoto: Free-energy calculations in protein folding by generalized-ensemble algorithms. In Lecture Notes in Computational Science and Engineering, edited by T. Schlick, H. H. Gan (Springer-Verlag, Berlin, 2002), pp. 304-332 [cond-mat/0102296]
-
(2002)
Lecture Notes in Computational Science and Engineering
, pp. 304-332
-
-
Sugita, Y.1
Okamoto, Y.2
-
5
-
-
1942455272
-
-
cond-mat/ 0308360
-
Y. Okamoto: J. Mol. Graphics Mod. 22, 425-439 (2004) [cond-mat/ 0308360]
-
(2004)
J. Mol. Graphics Mod
, vol.22
, pp. 425-439
-
-
Okamoto, Y.1
-
11
-
-
84986519238
-
-
S. Kumar, D. Bouzida, R. H. Swendsen, P. A. Kollman, J. M. Rosenberg: J. Comput. Chem. 13, 1011-1021 (1992)
-
(1992)
J. Comput. Chem
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
17
-
-
0001885966
-
-
cond-mat/ 9909236
-
B. A. Berg: Fields Inst. Commun. 26, 1-24 (2000) [cond-mat/ 9909236]
-
(2000)
Fields Inst. Commun
, vol.26
, pp. 1-24
-
-
Berg, B.A.1
-
18
-
-
0032070293
-
-
W. Janke: Physica A 254, 164-178 (1998)
-
(1998)
Physica A
, vol.254
, pp. 164-178
-
-
Janke, W.1
-
48
-
-
0001738980
-
-
J. Higo, N. Nakajima, H. Shirai, A. Kidera, H. Nakamura: J. Comput. Chem. 18, 2086-2092 (1997)
-
(1997)
J. Comput. Chem
, vol.18
, pp. 2086-2092
-
-
Higo, J.1
Nakajima, N.2
Shirai, H.3
Kidera, A.4
Nakamura, H.5
-
52
-
-
0000399357
-
-
H. Shimizu, K. Uehara, K. Yamamoto, Y. Hiwatari: Mol. Sim. 22, 285-301 (1999)
-
(1999)
Mol. Sim
, vol.22
, pp. 285-301
-
-
Shimizu, H.1
Uehara, K.2
Yamamoto, K.3
Hiwatari, Y.4
-
53
-
-
0000025377
-
-
S. Ono, N. Nakajima, J. Higo, H. Nakamura: Chem. Phys. Lett. 312, 247-254 (1999)
-
(1999)
Chem. Phys. Lett
, vol.312
, pp. 247-254
-
-
Ono, S.1
Nakajima, N.2
Higo, J.3
Nakamura, H.4
-
55
-
-
0000513601
-
-
K. Sayano, H. Kono, M. M. Gromiha, A. Sarai: J. Comput. Chem. 21, 954-962 (2000)
-
(2000)
J. Comput. Chem
, vol.21
, pp. 954-962
-
-
Sayano, K.1
Kono, H.2
Gromiha, M.M.3
Sarai, A.4
-
57
-
-
0001665845
-
-
A. Mitsutake, M. Kinoshita, Y. Okamoto, F. Hirata: Chem. Phys. Lett. 329, 295-303 (2000)
-
(2000)
Chem. Phys. Lett
, vol.329
, pp. 295-303
-
-
Mitsutake, A.1
Kinoshita, M.2
Okamoto, Y.3
Hirata, F.4
-
62
-
-
0037337217
-
-
N. Rathore, T. A. Knotts, IV, J. J. de Pablo: J. Chem. Phys. 118, 4285-4290 (2003)
-
(2003)
J. Chem. Phys
, vol.118
, pp. 4285-4290
-
-
Rathore, N.1
Knotts, T.A.2
IV, J.3
de Pablo, J.4
-
68
-
-
84953648015
-
-
A. P. Lyubartsev, A. A. Martinovski, S. V. Shevkunov, P. N. Vorontsov-Velyaminov: J. Chem. Phys. 96, 1776-1783 (1992)
-
(1992)
J. Chem. Phys
, vol.96
, pp. 1776-1783
-
-
Lyubartsev, A.P.1
Martinovski, A.A.2
Shevkunov, S.V.3
Vorontsov-Velyaminov, P.N.4
-
70
-
-
0003160962
-
-
edited by A.P. Young World Scientific, Singapore
-
E. Marinari, G. Parisi, J. J. Ruiz-Lorenzo: In Spin Glasses and Random Fields, edited by A.P. Young (World Scientific, Singapore, 1998), pp. 59-98
-
(1998)
Spin Glasses and Random Fields
, pp. 59-98
-
-
Marinari, E.1
Parisi, G.2
Ruiz-Lorenzo, J.J.3
-
75
-
-
0032043566
-
-
B. A. Berg: Nucl. Phys. B (Proc. Suppl.) 63A-C, 982-984 (1998)
-
B. A. Berg: Nucl. Phys. B (Proc. Suppl.) 63A-C, 982-984 (1998)
-
-
-
-
76
-
-
37549057492
-
-
W. Janke: Histograms and all that. In Computer Simulations of Surfaces and Interfaces V, NATO Science Series, II Mathematics, Physics and Chemistry 114, Proceedings of the NATO Advanced Study Institute, edited by B. Dünweg, D. P. Landau, A. I. Milchev (Kluwer, Dordrecht, 2003), pp. 137-157
-
W. Janke: Histograms and all that. In Computer Simulations of Surfaces and Interfaces V, NATO Science Series, II Mathematics, Physics and Chemistry Vol. 114, Proceedings of the NATO Advanced Study Institute, edited by B. Dünweg, D. P. Landau, A. I. Milchev (Kluwer, Dordrecht, 2003), pp. 137-157
-
-
-
-
79
-
-
37549045128
-
-
C. J. Geyer: In Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface, edited by E. M. Keramidas (Interface Foundation, Fairfax Station, 1991), pp. 156-163
-
C. J. Geyer: In Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface, edited by E. M. Keramidas (Interface Foundation, Fairfax Station, 1991), pp. 156-163
-
-
-
-
81
-
-
0004084408
-
-
edited by R. Vichnevetsky, J. J. H. Miller
-
K. Kimura, K. Taki: In Proceedings of the 13th IMACS World Congress on Computation and Applied Mathematics (IMACS '91), edited by R. Vichnevetsky, J. J. H. Miller, Vol. 2, pp. 827-828
-
Proceedings of the 13th IMACS World Congress on Computation and Applied Mathematics (IMACS '91)
, vol.2
, pp. 827-828
-
-
Kimura, K.1
Taki, K.2
-
83
-
-
0039924671
-
-
M. C. Tesi, E. J. J. van Rensburg, E. Orlandini, S. G. Whittington: J. Stat. Phys. 82, 155-181 (1996)
-
M. C. Tesi, E. J. J. van Rensburg, E. Orlandini, S. G. Whittington: J. Stat. Phys. 82, 155-181 (1996)
-
-
-
-
93
-
-
0000130835
-
-
G. M. Verkhivker, P. A. Rejto, D. Bouzida, S. Arthurs, A. B. Colson, S. T. Freer, D. K. Gehlhaar, V. Larson, B. A. Luty, T. Marrone, P. W. Rose: Chem. Phys. Lett. 337, 181-189 (2001)
-
(2001)
Chem. Phys. Lett
, vol.337
, pp. 181-189
-
-
Verkhivker, G.M.1
Rejto, P.A.2
Bouzida, D.3
Arthurs, S.4
Colson, A.B.5
Freer, S.T.6
Gehlhaar, D.K.7
Larson, V.8
Luty, B.A.9
Marrone, T.10
Rose, P.W.11
-
99
-
-
0142248393
-
-
G. La Penna, A. Mitsutake, M. Masuya, Y. Okamoto: Chem. Phys. Lett. 380, 609-619 (2003)
-
(2003)
Chem. Phys. Lett
, vol.380
, pp. 609-619
-
-
La Penna, G.1
Mitsutake, A.2
Masuya, M.3
Okamoto, Y.4
-
102
-
-
0034354036
-
-
T. Nishikawa, H. Ohtsuka, Y. Sugita, M. Mikami, Y. Okamoto: Prog. Theor. Phys. (Suppl.) 138, 270-271 (2000)
-
(2000)
Prog. Theor. Phys. (Suppl.)
, vol.138
, pp. 270-271
-
-
Nishikawa, T.1
Ohtsuka, H.2
Sugita, Y.3
Mikami, M.4
Okamoto, Y.5
-
105
-
-
0000551750
-
-
T. Okabe, M. Kawata, Y. Okamoto, M. Mikami: Chem. Phys. Lett. 335, 435-439 (2001)
-
(2001)
Chem. Phys. Lett
, vol.335
, pp. 435-439
-
-
Okabe, T.1
Kawata, M.2
Okamoto, Y.3
Mikami, M.4
-
106
-
-
0000285719
-
-
Y. Ishikawa, Y. Sugita, T. Nishikawa, Y. Okamoto: Chem. Phys. Lett. 333, 199-206 (2001)
-
(2001)
Chem. Phys. Lett
, vol.333
, pp. 199-206
-
-
Ishikawa, Y.1
Sugita, Y.2
Nishikawa, T.3
Okamoto, Y.4
-
122
-
-
5744249209
-
-
N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, E. Teller: J. Chem. Phys. 21, 1087-1092 (1953)
-
(1953)
J. Chem. Phys
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
123
-
-
84943502952
-
-
S. Nosé: Mol. Phys. 52, 255-268 (1984)
-
(1984)
Mol. Phys
, vol.52
, pp. 255-268
-
-
Nosé, S.1
-
127
-
-
0023338543
-
-
T. Ooi, M. Oobatake, G. Némethy, H. A. Scheraga: Proc. Natl. Acad. Sci. USA 84, 3086-3090 (1987)
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 3086-3090
-
-
Ooi, T.1
Oobatake, M.2
Némethy, G.3
Scheraga, H.A.4
-
128
-
-
0000701085
-
-
H. Kawai, Y. Okamoto, M. Fukugita, T. Nakazawa, T. Kikuchi: Chem. Lett. 1991, 213-216 (1991)
-
(1991)
Chem. Lett
, vol.1991
, pp. 213-216
-
-
Kawai, H.1
Okamoto, Y.2
Fukugita, M.3
Nakazawa, T.4
Kikuchi, T.5
-
129
-
-
0025850527
-
-
Y. Okamoto, M. Fukugita, T. Nakazawa, H. Kawai: Protein Eng. 4, 639-647 (1991)
-
(1991)
Protein Eng
, vol.4
, pp. 639-647
-
-
Okamoto, Y.1
Fukugita, M.2
Nakazawa, T.3
Kawai, H.4
-
130
-
-
37549011664
-
-
M. Masuya: Manuscript in preparation; see also http://biocomputing.cc/ nsol/
-
M. Masuya: Manuscript in preparation; see also http://biocomputing.cc/ nsol/
-
-
-
-
131
-
-
0002098417
-
-
edited by A. Wilkinson, P. Weiner, W. F. van Gunsteren Kluwer, Dordrecht
-
P. A. Kollman, R. Dixon, W. Cornell, T. Fox, C. Chipot, A. Pohorille: In Computer Simulation of Biomolecular Systems, Vol. 3, edited by A. Wilkinson, P. Weiner, W. F. van Gunsteren (Kluwer, Dordrecht, 1997), pp. 83-96
-
(1997)
Computer Simulation of Biomolecular Systems
, vol.3
, pp. 83-96
-
-
Kollman, P.A.1
Dixon, R.2
Cornell, W.3
Fox, T.4
Chipot, C.5
Pohorille, A.6
-
132
-
-
0004016501
-
-
W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R.W. Impey, M. L. Klein: J. Chem. Phys. 79, 926-935 (1983)
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
135
-
-
0008348735
-
-
K. Morikami, T. Nakai, A. Kidera, M. Saito, H. Nakamura: Comput. Chem. 16, 243-248 (1992)
-
(1992)
Comput. Chem
, vol.16
, pp. 243-248
-
-
Morikami, K.1
Nakai, T.2
Kidera, A.3
Saito, M.4
Nakamura, H.5
-
137
-
-
0023122030
-
-
K. R. Shoemaker, P. S. Kim, E. J. York, J. M. Stewart, R. L. Baldwin: Nature 326, 563-567 (1987)
-
(1987)
Nature
, vol.326
, pp. 563-567
-
-
Shoemaker, K.R.1
Kim, P.S.2
York, E.J.3
Stewart, J.M.4
Baldwin, R.L.5
-
138
-
-
0025181558
-
-
K. R. Shoemaker, R. Fairman, D. A. Schultz, A. D. Robertson, E. J. York, J. M. Stewart, R. L. Baldwin: Biopolymers 29, 1-11 (1990)
-
(1990)
Biopolymers
, vol.29
, pp. 1-11
-
-
Shoemaker, K.R.1
Fairman, R.2
Schultz, D.A.3
Robertson, A.D.4
York, E.J.5
Stewart, J.M.6
Baldwin, R.L.7
-
145
-
-
0037097318
-
-
T. Nagasima, Y. Sugita, A. Mitsutake, Y. Okamoto: Comput. Phys. Commun. 146, 69-76 (2002)
-
(2002)
Comput. Phys. Commun
, vol.146
, pp. 69-76
-
-
Nagasima, T.1
Sugita, Y.2
Mitsutake, A.3
Okamoto, Y.4
|